Wall clock time and date at job start Tue Mar 31 2020 15:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 8 8 H 1.08999 * 109.47456 * 54.99697 * 7 6 4 9 9 C 1.50695 * 109.47310 * 174.99936 * 7 6 4 10 10 H 1.08005 * 120.00302 * 239.99738 * 9 7 6 11 11 C 1.37884 * 120.00111 * 59.99751 * 9 7 6 12 12 N 1.31510 * 119.99863 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00101 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46847 * 90.00087 * 13 11 9 15 15 H 1.48501 * 109.47360 * 209.99830 * 13 11 9 16 16 H 1.48499 * 109.47435 * 330.00291 * 13 11 9 17 17 O 1.42906 * 109.46996 * 294.99650 * 7 6 4 18 18 C 1.42896 * 113.99694 * 149.99832 * 17 7 6 19 19 C 1.50705 * 109.46971 * 179.97438 * 18 17 7 20 20 C 1.38256 * 119.99703 * 0.02562 * 19 18 17 21 21 C 1.38222 * 119.99770 * 180.02562 * 20 19 18 22 22 C 1.38251 * 119.99917 * 359.96542 * 21 20 19 23 23 C 1.38217 * 120.00217 * 359.97438 * 22 21 20 24 24 C 1.38214 * 120.00136 * 179.72368 * 19 18 17 25 25 N 1.48020 * 119.99787 * 0.02562 * 24 19 18 26 26 O 1.21799 * 119.99851 * 179.97438 * 25 24 19 27 27 O 1.21797 * 120.00356 * 359.97438 * 25 24 19 28 28 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 30 30 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 34 34 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 35 35 H 0.96998 * 120.00236 * 180.02562 * 12 11 9 36 36 H 1.08995 * 109.47807 * 299.99993 * 18 17 7 37 37 H 1.09000 * 109.47500 * 60.00530 * 18 17 7 38 38 H 1.07996 * 120.00297 * 359.97393 * 20 19 18 39 39 H 1.08005 * 119.99560 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.00162 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.00036 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4485 2.8573 0.0107 8 1 5.7835 2.2522 -0.8318 9 6 6.0247 4.2448 -0.1070 10 1 6.6624 4.4958 -0.9418 11 6 5.7377 5.1940 0.8510 12 7 4.9616 4.8883 1.8678 13 14 6.4525 6.9137 0.7056 14 1 5.5210 7.7730 -0.0686 15 1 6.6430 7.4870 2.0621 16 1 7.7615 6.8483 0.0074 17 8 5.8902 2.2602 1.2315 18 6 7.1138 1.5316 1.1128 19 6 7.4833 0.9486 2.4524 20 6 6.6689 1.1645 3.5486 21 6 7.0081 0.6302 4.7774 22 6 8.1613 -0.1206 4.9102 23 6 8.9748 -0.3375 3.8140 24 6 8.6331 0.1929 2.5838 25 7 9.5017 -0.0433 1.4089 26 8 10.5152 -0.7089 1.5248 27 8 9.2031 0.4278 0.3261 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.5878 3.4722 -0.8839 34 1 3.5816 3.4669 0.8960 35 1 4.7594 5.5562 2.5415 36 1 6.9889 0.7271 0.3880 37 1 7.9051 2.2024 0.7782 38 1 5.7682 1.7512 3.4450 39 1 6.3721 0.7992 5.6338 40 1 8.4266 -0.5377 5.8704 41 1 9.8759 -0.9237 3.9179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222760439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:59 Heat of formation + Delta-G solvation = -112.233178 kcal Electronic energy + Delta-G solvation = -27923.368987 eV Core-core repulsion = 23772.148752 eV Total energy + Delta-G solvation = -4151.220235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.89477 -39.74167 -39.22271 -36.95624 -36.26087 -35.69913 -33.27494 -31.94985 -31.58583 -31.36314 -29.86669 -26.70334 -26.11099 -25.17014 -23.20912 -22.33558 -21.60844 -21.45076 -19.82470 -18.72640 -18.24885 -17.26445 -17.16847 -16.58024 -16.26919 -16.06899 -15.56002 -15.34692 -14.77333 -14.43234 -14.24297 -14.17521 -13.76493 -13.60620 -12.98800 -12.86761 -12.54049 -12.23944 -12.18857 -11.80268 -11.60776 -11.44365 -11.28672 -11.14013 -11.07722 -10.96312 -10.82957 -10.76297 -10.65198 -10.37916 -10.12981 -10.03642 -9.62713 -9.38360 -9.22754 -8.88704 -8.68206 -7.99888 -6.15991 -4.32941 0.15544 1.20108 1.66236 1.75004 3.05781 3.20443 3.29278 3.32441 3.36982 3.53731 4.30083 4.37832 4.61506 4.93159 4.96077 5.07599 5.12842 5.14921 5.19645 5.35599 5.39476 5.48746 5.53480 5.88627 5.90199 5.94310 6.00176 6.07852 6.23218 6.29007 6.33600 6.42493 6.48487 6.64102 6.68784 6.85376 6.91413 7.04329 7.42573 7.73867 7.99628 8.05861 8.48037 8.57679 8.87982 9.43216 10.85995 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008063 B = 0.005319 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3471.608608 B = 5262.827232 C = 7174.867039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.368 6.368 4 C 0.458 3.542 5 O -0.517 6.517 6 C -0.102 4.102 7 C 0.234 3.766 8 H 0.020 0.980 9 C -0.556 4.556 10 H 0.063 0.937 11 C 0.086 3.914 12 N -0.862 5.862 13 Si 0.889 3.111 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.273 1.273 17 O -0.366 6.366 18 C 0.105 3.895 19 C 0.005 3.995 20 C -0.090 4.090 21 C -0.073 4.073 22 C -0.135 4.135 23 C -0.064 4.064 24 C -0.054 4.054 25 N 0.034 4.966 26 O -0.186 6.186 27 O -0.151 6.151 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.138 0.862 35 H 0.263 0.737 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.864 -8.371 4.974 10.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.286 6.286 4 C 0.302 3.698 5 O -0.404 6.404 6 C -0.139 4.139 7 C 0.178 3.822 8 H 0.038 0.962 9 C -0.593 4.593 10 H 0.081 0.919 11 C -0.120 4.120 12 N -0.498 5.498 13 Si 0.717 3.283 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.197 1.197 17 O -0.285 6.285 18 C 0.028 3.972 19 C 0.003 3.997 20 C -0.108 4.108 21 C -0.091 4.091 22 C -0.153 4.153 23 C -0.083 4.083 24 C -0.137 4.137 25 N 0.549 4.451 26 O -0.395 6.395 27 O -0.369 6.369 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.155 0.845 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.182 0.818 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.232 -8.512 5.875 10.836 hybrid contribution 0.780 0.692 -0.439 1.132 sum -2.452 -7.820 5.436 9.835 Atomic orbital electron populations 1.21774 0.93383 1.02265 1.03309 1.22826 0.94796 0.81971 1.01906 1.86592 1.26420 1.30795 1.84804 1.25009 0.79283 0.94458 0.71007 1.90569 1.60207 1.43694 1.45947 1.21902 0.97636 0.87664 1.06710 1.19339 0.87936 0.91960 0.82948 0.96156 1.21513 1.32152 0.95723 1.09950 0.91878 1.24979 0.93938 0.98486 0.94549 1.69862 1.34841 1.34005 1.11053 0.86650 0.79891 0.84309 0.77499 1.20367 1.21133 1.19734 1.87880 1.36404 1.68600 1.35654 1.21200 0.90920 0.95361 0.89695 1.20140 0.89902 0.90814 0.98840 1.21385 1.00723 0.98522 0.90156 1.21678 0.95678 0.93682 0.98074 1.21092 0.95201 1.00797 0.98243 1.20874 1.00257 0.97296 0.89858 1.20951 0.95697 1.10322 0.86751 1.43621 1.00583 0.98416 1.02462 1.94465 1.15448 1.38009 1.91625 1.94576 1.77121 1.50979 1.14180 0.90920 0.91641 0.91708 0.91959 0.91897 0.88645 0.84454 0.92716 0.91433 0.90638 0.81847 0.84421 0.84263 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.29 37.15 0.38 -1.22 16 2 C 0.06 0.86 6.19 37.15 0.23 1.09 16 3 O -0.37 -6.67 10.22 -39.26 -0.40 -7.07 16 4 C 0.46 9.49 7.84 36.00 0.28 9.77 16 5 O -0.52 -11.65 15.17 -24.06 -0.36 -12.02 16 6 C -0.10 -2.22 5.22 -27.89 -0.15 -2.37 16 7 C 0.23 5.61 1.82 -27.89 -0.05 5.56 16 8 H 0.02 0.49 7.60 -51.93 -0.39 0.10 16 9 C -0.56 -14.21 8.90 -34.44 -0.31 -14.52 16 10 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 11 C 0.09 2.19 5.24 -17.82 -0.09 2.09 16 12 N -0.86 -21.96 10.93 55.43 0.61 -21.35 16 13 Si 0.89 19.91 29.54 -169.99 -5.02 14.88 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 O -0.37 -8.65 7.09 -49.67 -0.35 -9.00 16 18 C 0.11 2.28 4.37 36.01 0.16 2.44 16 19 C 0.00 0.09 5.88 -104.62 -0.62 -0.53 16 20 C -0.09 -1.52 9.38 -39.58 -0.37 -1.89 16 21 C -0.07 -0.93 10.05 -39.58 -0.40 -1.33 16 22 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 23 C -0.06 -0.87 9.56 -39.58 -0.38 -1.25 16 24 C -0.05 -0.93 6.85 -79.95 -0.55 -1.48 16 25 N 0.03 0.64 4.45 33.96 0.15 0.79 16 26 O -0.19 -3.38 18.45 -29.46 -0.54 -3.93 16 27 O -0.15 -3.08 15.43 -29.46 -0.45 -3.53 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.06 0.92 8.13 -51.93 -0.42 0.49 16 33 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 34 H 0.14 3.24 6.22 -51.93 -0.32 2.92 16 35 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 36 H 0.07 1.51 7.23 -51.93 -0.38 1.13 16 37 H 0.08 1.73 7.32 -51.93 -0.38 1.35 16 38 H 0.16 3.07 7.01 -52.49 -0.37 2.70 16 39 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.15 1.69 7.61 -52.49 -0.40 1.29 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -28.98 358.29 -8.40 -37.38 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.17 Total: 4.02 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.25 Total: -5.57 kcal Atomic # 7 Polarization: -21.32 SS G_CDS: 0.76 Total: -20.56 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -2.12 Total: -35.55 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.98 -8.40 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222760439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.850 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds