Wall clock time and date at job start Tue Mar 31 2020 15:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 8 8 H 1.08999 * 109.47456 * 54.99697 * 7 6 4 9 9 C 1.50695 * 109.47310 * 174.99936 * 7 6 4 10 10 H 1.08005 * 120.00302 * 239.99738 * 9 7 6 11 11 C 1.37884 * 120.00111 * 59.99751 * 9 7 6 12 12 N 1.31510 * 119.99863 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00101 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46847 * 90.00087 * 13 11 9 15 15 H 1.48501 * 109.47360 * 209.99830 * 13 11 9 16 16 H 1.48499 * 109.47435 * 330.00291 * 13 11 9 17 17 O 1.42906 * 109.46996 * 294.99650 * 7 6 4 18 18 C 1.42896 * 113.99694 * 149.99832 * 17 7 6 19 19 C 1.50705 * 109.46971 * 179.97438 * 18 17 7 20 20 C 1.38256 * 119.99703 * 0.02562 * 19 18 17 21 21 C 1.38222 * 119.99770 * 180.02562 * 20 19 18 22 22 C 1.38251 * 119.99917 * 359.96542 * 21 20 19 23 23 C 1.38217 * 120.00217 * 359.97438 * 22 21 20 24 24 C 1.38214 * 120.00136 * 179.72368 * 19 18 17 25 25 N 1.48020 * 119.99787 * 0.02562 * 24 19 18 26 26 O 1.21799 * 119.99851 * 179.97438 * 25 24 19 27 27 O 1.21797 * 120.00356 * 359.97438 * 25 24 19 28 28 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 30 30 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 34 34 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 35 35 H 0.96998 * 120.00236 * 180.02562 * 12 11 9 36 36 H 1.08995 * 109.47807 * 299.99993 * 18 17 7 37 37 H 1.09000 * 109.47500 * 60.00530 * 18 17 7 38 38 H 1.07996 * 120.00297 * 359.97393 * 20 19 18 39 39 H 1.08005 * 119.99560 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.00162 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.00036 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4485 2.8573 0.0107 8 1 5.7835 2.2522 -0.8318 9 6 6.0247 4.2448 -0.1070 10 1 6.6624 4.4958 -0.9418 11 6 5.7377 5.1940 0.8510 12 7 4.9616 4.8883 1.8678 13 14 6.4525 6.9137 0.7056 14 1 5.5210 7.7730 -0.0686 15 1 6.6430 7.4870 2.0621 16 1 7.7615 6.8483 0.0074 17 8 5.8902 2.2602 1.2315 18 6 7.1138 1.5316 1.1128 19 6 7.4833 0.9486 2.4524 20 6 6.6689 1.1645 3.5486 21 6 7.0081 0.6302 4.7774 22 6 8.1613 -0.1206 4.9102 23 6 8.9748 -0.3375 3.8140 24 6 8.6331 0.1929 2.5838 25 7 9.5017 -0.0433 1.4089 26 8 10.5152 -0.7089 1.5248 27 8 9.2031 0.4278 0.3261 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.5878 3.4722 -0.8839 34 1 3.5816 3.4669 0.8960 35 1 4.7594 5.5562 2.5415 36 1 6.9889 0.7271 0.3880 37 1 7.9051 2.2024 0.7782 38 1 5.7682 1.7512 3.4450 39 1 6.3721 0.7992 5.6338 40 1 8.4266 -0.5377 5.8704 41 1 9.8759 -0.9237 3.9179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222760439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:58 Heat of formation + Delta-G solvation = -126.426861 kcal Electronic energy + Delta-G solvation = -27923.984471 eV Core-core repulsion = 23772.148752 eV Total energy + Delta-G solvation = -4151.835719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.32728 -41.37334 -40.49604 -38.65304 -37.74475 -37.32637 -35.08314 -33.34636 -32.89694 -32.61211 -31.49999 -28.19213 -27.95520 -26.60360 -24.61084 -23.65779 -23.10357 -22.82957 -21.52374 -20.09641 -19.63750 -18.95745 -18.70000 -18.34424 -17.76453 -17.44571 -17.04440 -16.96331 -16.42250 -15.95212 -15.81065 -15.51965 -15.16660 -15.02824 -14.54029 -14.11594 -13.82720 -13.62905 -13.45257 -13.27631 -13.03822 -12.92376 -12.79768 -12.67787 -12.63451 -12.52825 -12.45125 -12.35314 -12.30689 -11.96400 -11.81156 -11.48314 -11.36703 -11.11697 -10.63507 -10.57153 -10.26468 -9.79634 -8.11687 -6.35620 -1.20075 0.03383 0.33604 0.40239 1.35864 1.41317 1.44353 1.52694 1.87371 2.36620 2.41499 2.82958 3.21662 3.45436 3.75018 3.85416 3.98752 4.00329 4.01024 4.09415 4.14878 4.33827 4.34922 4.47972 4.56075 4.61929 4.72281 4.76559 4.88165 4.91662 4.92995 4.99841 5.14623 5.15133 5.21981 5.30103 5.44300 5.57565 5.61746 5.75439 6.10024 6.50403 6.54820 6.89875 6.96393 7.42761 8.89608 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008063 B = 0.005319 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3471.608608 B = 5262.827232 C = 7174.867039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.465 3.535 5 O -0.540 6.540 6 C -0.094 4.094 7 C 0.232 3.768 8 H 0.001 0.999 9 C -0.580 4.580 10 H 0.050 0.950 11 C 0.054 3.946 12 N -0.874 5.874 13 Si 0.946 3.054 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.281 1.281 17 O -0.371 6.371 18 C 0.117 3.883 19 C -0.029 4.029 20 C -0.110 4.110 21 C -0.051 4.051 22 C -0.107 4.107 23 C -0.054 4.054 24 C -0.070 4.070 25 N 0.034 4.966 26 O -0.146 6.146 27 O -0.225 6.225 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.266 0.734 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.136 0.864 39 H 0.179 0.821 40 H 0.197 0.803 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.149 -9.504 8.288 12.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.285 6.285 4 C 0.311 3.689 5 O -0.430 6.430 6 C -0.132 4.132 7 C 0.176 3.824 8 H 0.019 0.981 9 C -0.617 4.617 10 H 0.068 0.932 11 C -0.151 4.151 12 N -0.510 5.510 13 Si 0.772 3.228 14 H -0.192 1.192 15 H -0.206 1.206 16 H -0.206 1.206 17 O -0.291 6.291 18 C 0.040 3.960 19 C -0.031 4.031 20 C -0.128 4.128 21 C -0.069 4.069 22 C -0.125 4.125 23 C -0.073 4.073 24 C -0.154 4.154 25 N 0.545 4.455 26 O -0.370 6.370 27 O -0.424 6.424 28 H 0.121 0.879 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.154 0.846 39 H 0.196 0.804 40 H 0.214 0.786 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.633 -9.564 9.079 13.678 hybrid contribution 0.918 0.855 -1.274 1.788 sum -2.715 -8.709 7.805 12.006 Atomic orbital electron populations 1.21801 0.89929 1.04390 1.03708 1.23251 0.97438 0.79830 1.01931 1.86556 1.24418 1.33386 1.84107 1.24589 0.80197 0.93543 0.70582 1.90562 1.61063 1.44215 1.47121 1.21658 0.96286 0.88701 1.06536 1.19296 0.89369 0.91128 0.82649 0.98061 1.21633 1.32913 0.96904 1.10273 0.93175 1.25516 0.94162 1.01304 0.94150 1.69948 1.34969 1.34902 1.11174 0.85769 0.78900 0.80639 0.77531 1.19157 1.20582 1.20625 1.87850 1.37200 1.68746 1.35293 1.20922 0.89214 0.93982 0.91905 1.19926 0.92018 0.93347 0.97787 1.21276 0.99982 0.99864 0.91701 1.22126 0.96295 0.91443 0.97025 1.21741 0.93043 0.98210 0.99476 1.21423 1.01369 0.96107 0.88414 1.21188 0.95343 1.11650 0.87246 1.43935 1.00697 0.97977 1.02867 1.94393 1.15033 1.36055 1.91473 1.94610 1.78397 1.53899 1.15509 0.87874 0.91383 0.91156 0.91795 0.92159 0.87513 0.85801 0.92399 0.93677 0.93605 0.84606 0.80354 0.78582 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 10.29 71.98 0.74 -1.99 16 2 C 0.05 1.39 6.19 71.98 0.45 1.84 16 3 O -0.37 -13.45 10.22 -51.41 -0.53 -13.97 16 4 C 0.47 20.14 7.84 71.23 0.56 20.69 16 5 O -0.54 -25.69 15.17 27.01 0.41 -25.28 16 6 C -0.09 -4.34 5.22 29.85 0.16 -4.19 16 7 C 0.23 11.98 1.82 29.85 0.05 12.03 16 8 H 0.00 0.07 7.60 -2.39 -0.02 0.05 16 9 C -0.58 -31.46 8.90 25.60 0.23 -31.23 16 10 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 11 C 0.05 2.79 5.24 84.66 0.44 3.23 16 12 N -0.87 -45.65 10.93 21.45 0.23 -45.41 16 13 Si 0.95 41.65 29.54 68.60 2.03 43.67 16 14 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 15 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 O -0.37 -18.96 7.09 -135.17 -0.96 -19.92 16 18 C 0.12 5.59 4.37 71.24 0.31 5.90 16 19 C -0.03 -1.15 5.88 -19.86 -0.12 -1.27 16 20 C -0.11 -3.72 9.38 22.27 0.21 -3.51 16 21 C -0.05 -1.11 10.05 22.27 0.22 -0.88 16 22 C -0.11 -1.83 10.05 22.27 0.22 -1.61 16 23 C -0.05 -1.28 9.56 22.27 0.21 -1.06 16 24 C -0.07 -2.44 6.85 36.37 0.25 -2.19 16 25 N 0.03 1.31 4.45 -46.46 -0.21 1.10 16 26 O -0.15 -5.20 18.45 18.89 0.35 -4.85 16 27 O -0.22 -10.03 15.43 18.89 0.29 -9.74 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 32 H 0.06 1.74 8.13 -2.38 -0.02 1.72 16 33 H 0.11 4.56 8.14 -2.38 -0.02 4.54 16 34 H 0.12 6.11 6.22 -2.39 -0.01 6.09 16 35 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 36 H 0.05 2.29 7.23 -2.39 -0.02 2.27 16 37 H 0.05 2.39 7.32 -2.39 -0.02 2.37 16 38 H 0.14 5.34 7.01 -2.91 -0.02 5.32 16 39 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 40 H 0.20 1.35 8.06 -2.91 -0.02 1.32 16 41 H 0.18 3.13 7.61 -2.91 -0.02 3.11 16 Total: -1.00 -69.01 358.29 6.61 -62.39 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.05 Total: 16.25 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 3.94 Total: -4.24 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.03 Total: -44.31 kcal Atomic # 8 Polarization: -73.34 SS G_CDS: -0.43 Total: -73.77 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -69.01 6.61 -62.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222760439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.033 kcal (2) G-P(sol) polarization free energy of solvation -69.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds