Wall clock time and date at job start Tue Mar 31 2020 15:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.47267 * 2 1 4 4 C 1.34227 * 117.00157 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00050 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00056 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.47250 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.46967 * 54.58154 * 7 6 4 9 9 C 1.50695 * 109.47135 * 174.58686 * 7 6 4 10 10 H 1.08005 * 120.00173 * 93.50662 * 9 7 6 11 11 C 1.37874 * 120.00103 * 273.50673 * 9 7 6 12 12 N 1.31517 * 120.00320 * 187.49772 * 11 9 7 13 13 Si 1.86800 * 119.99861 * 7.49212 * 11 9 7 14 14 H 1.48510 * 109.46610 * 92.34055 * 13 11 9 15 15 H 1.48497 * 109.47421 * 212.33431 * 13 11 9 16 16 H 1.48500 * 109.47289 * 332.34208 * 13 11 9 17 17 O 1.42908 * 109.47063 * 294.58676 * 7 6 4 18 18 C 1.35907 * 116.99998 * 156.68253 * 17 7 6 19 19 C 1.38744 * 119.95269 * 185.60487 * 18 17 7 20 20 C 1.38706 * 120.18877 * 179.97438 * 19 18 17 21 21 O 1.35910 * 119.95493 * 179.97438 * 20 19 18 22 22 C 1.38527 * 120.09083 * 0.02562 * 20 19 18 23 23 C 1.39490 * 119.90824 * 359.97438 * 22 20 19 24 24 C 1.47871 * 120.09436 * 180.02562 * 23 22 20 25 25 N 1.34778 * 119.99853 * 359.97438 * 24 23 22 26 26 O 1.21552 * 120.00087 * 179.97438 * 24 23 22 27 27 C 1.38488 * 119.95273 * 5.33281 * 18 17 7 28 28 H 1.08995 * 109.46732 * 60.00086 * 1 2 3 29 29 H 1.08998 * 109.46738 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46912 * 300.00156 * 1 2 3 31 31 H 1.08991 * 109.47077 * 239.99336 * 2 1 3 32 32 H 1.09008 * 109.46910 * 119.99339 * 2 1 3 33 33 H 1.09000 * 109.47471 * 300.00761 * 6 4 3 34 34 H 1.09004 * 109.47112 * 60.00791 * 6 4 3 35 35 H 0.97002 * 120.00364 * 179.97438 * 12 11 9 36 36 H 1.08008 * 119.90646 * 0.02576 * 19 18 17 37 37 H 0.96701 * 113.99649 * 90.00242 * 21 20 19 38 38 H 1.08010 * 120.04372 * 180.02562 * 22 20 19 39 39 H 0.96996 * 120.00468 * 359.97438 * 25 24 23 40 40 H 0.97000 * 119.99674 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.05016 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8573 0.0001 8 1 5.7804 2.2432 -0.8371 9 6 6.0243 4.2434 -0.1345 10 1 6.2881 4.8068 0.7485 11 6 6.2144 4.7926 -1.3847 12 7 6.8503 5.9369 -1.5107 13 14 5.5688 3.9112 -2.8999 14 1 4.2051 4.4065 -3.2171 15 1 6.4713 4.1762 -4.0490 16 1 5.5164 2.4504 -2.6382 17 8 5.8950 2.2731 1.2256 18 6 7.1200 1.6845 1.2184 19 6 7.5650 0.9975 2.3386 20 6 8.8141 0.3945 2.3365 21 8 9.2455 -0.2768 3.4366 22 6 9.6230 0.4765 1.2149 23 6 9.1795 1.1662 0.0864 24 6 10.0393 1.2559 -1.1133 25 7 11.2536 0.6711 -1.1173 26 8 9.6509 1.8569 -2.0958 27 6 7.9199 1.7665 0.0909 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.5852 3.4691 -0.8904 34 1 3.5845 3.4700 0.8896 35 1 6.9843 6.3231 -2.3904 36 1 6.9366 0.9313 3.2146 37 1 9.0108 -1.2149 3.4421 38 1 10.5954 0.0063 1.2138 39 1 11.5637 0.1918 -0.3331 40 1 11.8177 0.7302 -1.9041 41 1 7.5708 2.2974 -0.7825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228268055.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:05 Heat of formation + Delta-G solvation = -209.397696 kcal Electronic energy + Delta-G solvation = -27833.872543 eV Core-core repulsion = 23678.438938 eV Total energy + Delta-G solvation = -4155.433605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77455 -41.35398 -40.20728 -39.38231 -37.69961 -36.82247 -35.30120 -34.81996 -33.37463 -32.46664 -31.33763 -30.22681 -28.46201 -25.42304 -24.83738 -23.92342 -22.71911 -21.85996 -21.56238 -19.97851 -19.59870 -18.61113 -18.40742 -18.05447 -17.75253 -17.46303 -17.32179 -16.94558 -16.65494 -16.42574 -15.96836 -15.62692 -15.35665 -15.25978 -15.03640 -14.79419 -14.53868 -14.25240 -13.77538 -13.61582 -13.41900 -13.17229 -13.04047 -12.86520 -12.67770 -12.54204 -12.48609 -12.01529 -11.96913 -11.83572 -11.55483 -11.51441 -11.25608 -11.17498 -10.90664 -10.80000 -9.84967 -9.14730 -8.48964 -6.57800 -0.26872 0.33167 1.14609 1.15878 1.27264 1.28944 1.66647 1.74520 2.15157 2.28878 2.44608 2.74302 2.88181 3.26705 3.74658 3.80769 3.99570 4.03063 4.08764 4.10941 4.16718 4.19600 4.27009 4.33735 4.37432 4.56527 4.73169 4.81898 4.92438 4.93756 5.12884 5.16993 5.21059 5.22690 5.34701 5.44072 5.57985 5.82108 6.00366 6.35785 6.39483 6.62869 6.73489 6.86392 7.11635 7.24028 8.66358 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009686 B = 0.005304 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.174637 B = 5278.054144 C = 6976.370295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 O -0.361 6.361 4 C 0.463 3.537 5 O -0.530 6.530 6 C -0.108 4.108 7 C 0.199 3.801 8 H 0.035 0.965 9 C -0.544 4.544 10 H 0.050 0.950 11 C 0.049 3.951 12 N -0.915 5.915 13 Si 0.897 3.103 14 H -0.233 1.233 15 H -0.285 1.285 16 H -0.258 1.258 17 O -0.316 6.316 18 C 0.150 3.850 19 C -0.170 4.170 20 C 0.148 3.852 21 O -0.490 6.490 22 C -0.142 4.142 23 C -0.103 4.103 24 C 0.559 3.441 25 N -0.818 5.818 26 O -0.587 6.587 27 C -0.171 4.171 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.273 0.727 36 H 0.148 0.852 37 H 0.416 0.584 38 H 0.176 0.824 39 H 0.420 0.580 40 H 0.415 0.585 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 -17.178 5.492 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 O -0.279 6.279 4 C 0.308 3.692 5 O -0.420 6.420 6 C -0.146 4.146 7 C 0.143 3.857 8 H 0.052 0.948 9 C -0.581 4.581 10 H 0.068 0.932 11 C -0.153 4.153 12 N -0.552 5.552 13 Si 0.721 3.279 14 H -0.156 1.156 15 H -0.211 1.211 16 H -0.182 1.182 17 O -0.230 6.230 18 C 0.103 3.897 19 C -0.190 4.190 20 C 0.102 3.898 21 O -0.303 6.303 22 C -0.161 4.161 23 C -0.107 4.107 24 C 0.345 3.655 25 N -0.384 5.384 26 O -0.468 6.468 27 C -0.191 4.191 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.148 0.852 35 H 0.082 0.918 36 H 0.165 0.835 37 H 0.276 0.724 38 H 0.194 0.806 39 H 0.253 0.747 40 H 0.248 0.752 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.551 -16.391 5.161 17.254 hybrid contribution 0.132 -0.288 -1.262 1.301 sum -1.419 -16.679 3.898 17.187 Atomic orbital electron populations 1.21820 0.89889 1.04493 1.03793 1.23346 0.97454 0.79370 1.02420 1.86536 1.23596 1.33879 1.83845 1.24174 0.80753 0.92976 0.71315 1.90609 1.61100 1.43860 1.46389 1.21971 0.94804 0.90450 1.07333 1.20232 0.90229 0.92397 0.82819 0.94775 1.21232 1.43528 0.99651 0.93737 0.93224 1.25481 0.93575 0.95249 1.01029 1.69971 1.39921 1.20037 1.25304 0.86528 0.80673 0.80324 0.80394 1.15638 1.21112 1.18237 1.85860 1.30423 1.68886 1.37805 1.18832 0.85434 0.91785 0.93667 1.20982 0.97923 1.02280 0.97778 1.17694 0.90040 0.95517 0.86504 1.84782 1.78950 1.28208 1.38385 1.21536 1.02152 1.01870 0.90548 1.19556 0.94334 1.01495 0.95287 1.18407 0.82774 0.77829 0.86504 1.43386 1.16674 1.56411 1.21943 1.90838 1.74706 1.44265 1.37005 1.21480 0.95661 1.02526 0.99464 0.91334 0.87844 0.91064 0.91746 0.91286 0.86331 0.85226 0.91790 0.83466 0.72373 0.80643 0.74703 0.75241 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 10.29 71.98 0.74 -1.60 16 2 C 0.05 1.17 6.19 71.98 0.45 1.62 16 3 O -0.36 -11.60 10.22 -51.39 -0.53 -12.13 16 4 C 0.46 17.99 7.84 71.24 0.56 18.55 16 5 O -0.53 -23.13 15.18 26.93 0.41 -22.72 16 6 C -0.11 -4.44 5.27 29.85 0.16 -4.28 16 7 C 0.20 9.83 0.75 29.85 0.02 9.85 16 8 H 0.03 1.83 3.71 -2.39 -0.01 1.82 16 9 C -0.54 -31.01 8.14 25.60 0.21 -30.80 16 10 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 11 C 0.05 2.86 5.47 84.65 0.46 3.32 16 12 N -0.92 -56.67 13.96 21.45 0.30 -56.37 16 13 Si 0.90 44.33 26.05 68.60 1.79 46.12 16 14 H -0.23 -10.12 7.11 99.48 0.71 -9.41 16 15 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 16 H -0.26 -12.73 5.95 99.48 0.59 -12.14 16 17 O -0.32 -15.12 9.05 -79.12 -0.72 -15.84 16 18 C 0.15 6.62 6.57 22.45 0.15 6.77 16 19 C -0.17 -5.92 9.91 22.50 0.22 -5.70 16 20 C 0.15 4.06 6.69 22.45 0.15 4.21 16 21 O -0.49 -9.70 13.50 -92.54 -1.25 -10.95 16 22 C -0.14 -3.78 9.48 22.64 0.21 -3.57 16 23 C -0.10 -3.82 5.87 -20.11 -0.12 -3.94 16 24 C 0.56 20.22 8.05 86.79 0.70 20.92 16 25 N -0.82 -17.48 8.82 -175.58 -1.55 -19.03 16 26 O -0.59 -28.19 17.18 -3.88 -0.07 -28.26 16 27 C -0.17 -8.00 8.21 22.64 0.19 -7.81 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 32 H 0.07 1.68 8.13 -2.38 -0.02 1.66 16 33 H 0.12 4.64 6.42 -2.39 -0.02 4.63 16 34 H 0.13 4.82 8.14 -2.39 -0.02 4.80 16 35 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.15 4.60 8.06 -2.91 -0.02 4.57 16 37 H 0.42 3.60 9.06 -74.06 -0.67 2.93 16 38 H 0.18 2.79 6.40 -2.91 -0.02 2.77 16 39 H 0.42 5.42 6.86 -92.71 -0.64 4.78 16 40 H 0.41 7.40 8.93 -92.71 -0.83 6.57 16 41 H 0.11 6.15 5.22 -2.91 -0.02 6.13 16 Total: -1.00 -84.53 352.72 1.36 -83.17 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -1.12 Total: 28.47 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 4.10 Total: 7.54 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -1.25 Total: -75.40 kcal Atomic # 8 Polarization: -87.74 SS G_CDS: -2.15 Total: -89.89 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.79 Total: 46.12 kcal Total: -84.53 1.36 -83.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228268055.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.231 kcal (2) G-P(sol) polarization free energy of solvation -84.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds