Wall clock time and date at job start Tue Mar 31 2020 15:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47458 * 2 1 4 4 C 1.35698 * 117.00223 * 180.02562 * 3 2 1 5 5 N 1.32245 * 119.68862 * 0.02562 * 4 3 2 6 6 C 1.31950 * 121.65905 * 179.97438 * 5 4 3 7 7 C 1.38074 * 120.85861 * 359.74101 * 6 5 4 8 8 C 1.38790 * 119.29866 * 0.51407 * 7 6 5 9 9 C 1.50690 * 120.76684 * 179.77518 * 8 7 6 10 10 N 1.46901 * 109.47155 * 254.85511 * 9 8 7 11 11 C 1.46901 * 110.99967 * 74.82101 * 10 9 8 12 12 C 1.50697 * 109.47094 * 190.00018 * 11 10 9 13 13 H 1.07999 * 120.00014 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00088 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00247 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00135 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47200 * 89.99866 * 16 14 12 18 18 H 1.48498 * 109.47470 * 209.99663 * 16 14 12 19 19 H 1.48501 * 109.47355 * 329.99853 * 16 14 12 20 20 C 1.46903 * 111.00118 * 198.77384 * 10 9 8 21 21 C 1.53005 * 109.46979 * 74.95043 * 20 10 9 22 22 C 1.47199 * 109.47217 * 174.78699 * 21 20 10 23 23 N 8.79447 * 142.31538 * 188.71587 * 3 1 2 24 24 C 1.38513 * 118.46892 * 359.49940 * 8 7 6 25 25 Cl 1.73594 * 120.45045 * 180.23513 * 24 8 7 26 26 H 1.09000 * 109.46825 * 300.00401 * 1 2 3 27 27 H 1.09002 * 109.46976 * 60.00099 * 1 2 3 28 28 H 1.08998 * 109.47588 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46825 * 239.99599 * 2 1 3 30 30 H 1.09002 * 109.46976 * 119.99901 * 2 1 3 31 31 H 1.08002 * 119.56876 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.35289 * 180.25896 * 7 6 5 33 33 H 1.09003 * 109.47470 * 134.85703 * 9 8 7 34 34 H 1.08996 * 109.47345 * 14.85366 * 9 8 7 35 35 H 1.08996 * 109.47290 * 310.00378 * 11 10 9 36 36 H 1.09001 * 109.46887 * 70.00199 * 11 10 9 37 37 H 0.96995 * 120.00388 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47154 * 194.94699 * 20 10 9 39 39 H 1.09000 * 109.46935 * 314.95264 * 20 10 9 40 40 H 1.09009 * 109.46730 * 294.78719 * 21 20 10 41 41 H 1.09001 * 109.47089 * 54.78513 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3517 1.5250 -0.0005 5 7 4.1516 0.4718 -0.0015 6 6 5.4649 0.5996 -0.0026 7 6 6.0550 1.8479 -0.0081 8 6 5.2510 2.9792 -0.0016 9 6 5.8600 4.3576 -0.0022 10 7 5.7340 4.9492 1.3366 11 6 6.6945 4.3470 2.2707 12 6 6.3768 4.7929 3.6747 13 1 5.5448 5.4575 3.8550 14 6 7.1488 4.3532 4.7290 15 7 8.1623 3.5442 4.5095 16 14 6.7546 4.9053 6.4694 17 1 5.8043 3.9473 7.0894 18 1 8.0047 4.9504 7.2697 19 1 6.1413 6.2573 6.4330 20 6 5.8944 6.4085 1.2845 21 6 4.6281 7.0404 0.7030 22 6 4.7379 8.5069 0.7663 23 7 4.8223 9.6388 0.8147 24 6 3.8760 2.8121 -0.0005 25 17 2.8221 4.1916 0.0014 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 6.0863 -0.2837 -0.0038 32 1 7.1308 1.9430 -0.0131 33 1 5.3399 4.9844 -0.7267 34 1 6.9139 4.2891 -0.2713 35 1 6.6276 3.2607 2.2106 36 1 7.7039 4.6639 2.0085 37 1 8.7057 3.2352 5.2511 38 1 6.0623 6.7917 2.2910 39 1 6.7476 6.6579 0.6537 40 1 4.5106 6.7292 -0.3351 41 1 3.7621 6.7156 1.2798 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250385265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:27 Heat of formation + Delta-G solvation = 18.555704 kcal Electronic energy + Delta-G solvation = -24859.453114 eV Core-core repulsion = 21186.906226 eV Total energy + Delta-G solvation = -3672.546888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56984 -38.33903 -37.33862 -36.24716 -36.04253 -33.03472 -32.63347 -32.01104 -30.57941 -29.68076 -27.70947 -25.60135 -23.56245 -23.33946 -23.03358 -21.62702 -20.16450 -17.96016 -17.38632 -16.97922 -16.44117 -16.28016 -16.13407 -15.24316 -14.87220 -14.65868 -14.48723 -14.05808 -13.95162 -13.59583 -13.49513 -12.98905 -12.71264 -12.51958 -12.35864 -12.33633 -12.05581 -11.94992 -11.83796 -11.60156 -11.58897 -11.33589 -11.06383 -10.78195 -10.75066 -10.71652 -10.63027 -10.38041 -10.00393 -9.55564 -9.31202 -9.18482 -8.50473 -8.20602 -7.50844 -6.09790 -4.10717 1.16016 1.35258 2.42330 2.96681 2.99961 3.01038 3.29475 3.36142 3.39345 3.77914 4.19008 4.39352 4.41176 4.74555 4.89389 4.94260 5.03509 5.12806 5.15882 5.27213 5.30896 5.34030 5.45284 5.50329 5.56753 5.73072 5.75310 5.76174 5.89030 5.90308 5.99176 6.22384 6.35644 6.45545 6.49842 7.08778 7.17640 7.26928 7.67723 7.78464 7.86847 7.90061 8.02871 8.38455 8.96056 9.54067 11.00903 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.009264 B = 0.004762 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.706461 B = 5878.456090 C = 7374.936293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 O -0.298 6.298 4 C 0.326 3.674 5 N -0.534 5.534 6 C 0.137 3.863 7 C -0.185 4.185 8 C 0.023 3.977 9 C 0.083 3.917 10 N -0.523 5.523 11 C 0.194 3.806 12 C -0.509 4.509 13 H 0.065 0.935 14 C 0.059 3.941 15 N -0.896 5.896 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.273 1.273 20 C 0.068 3.932 21 C -0.028 4.028 22 C 0.219 3.781 23 N -0.455 5.455 24 C -0.083 4.083 25 Cl -0.041 7.041 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.144 0.856 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.036 0.964 36 H -0.005 1.005 37 H 0.261 0.739 38 H 0.099 0.901 39 H 0.034 0.966 40 H 0.099 0.901 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.846 -6.843 -12.643 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 O -0.205 6.205 4 C 0.146 3.854 5 N -0.259 5.259 6 C -0.018 4.018 7 C -0.206 4.206 8 C 0.014 3.986 9 C -0.045 4.045 10 N -0.247 5.247 11 C 0.069 3.931 12 C -0.548 4.548 13 H 0.083 0.917 14 C -0.143 4.143 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.062 4.062 21 C -0.069 4.069 22 C -0.099 4.099 23 N -0.133 5.133 24 C -0.113 4.113 25 Cl -0.012 7.012 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.180 0.820 32 H 0.162 0.838 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.012 0.988 37 H 0.071 0.929 38 H 0.118 0.882 39 H 0.052 0.948 40 H 0.117 0.883 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.742 -5.858 -12.293 16.744 hybrid contribution 1.052 0.449 0.852 1.426 sum -8.690 -5.409 -11.442 15.352 Atomic orbital electron populations 1.21808 0.93166 1.02622 1.03382 1.22575 0.94613 0.81244 1.02404 1.86290 1.16286 1.30302 1.87644 1.19395 0.84548 0.88350 0.93083 1.67416 1.06760 1.31557 1.20122 1.22373 0.88956 0.97473 0.92977 1.21954 1.01697 0.92024 1.04905 1.19997 0.90232 0.96983 0.91411 1.21105 0.98652 0.90761 0.93985 1.62027 1.55091 1.02423 1.05163 1.19811 0.87834 0.95325 0.90125 1.21116 1.13837 1.29079 0.90749 0.91680 1.24930 0.94999 0.95147 0.99177 1.69934 1.18238 1.33594 1.31811 0.86559 0.77668 0.79190 0.84401 1.20640 1.21351 1.19796 1.21882 0.92733 0.88976 1.02570 1.19464 1.02962 0.80403 1.04078 1.29358 0.92651 0.95357 0.92517 1.81167 1.09247 1.13269 1.09591 1.20567 0.91469 0.86996 1.12288 1.98334 1.64906 1.41166 1.96815 0.91529 0.91741 0.90518 0.91809 0.91592 0.82043 0.83846 0.89914 0.93255 0.94551 0.98757 0.92903 0.88237 0.94823 0.88319 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.07 0.75 6.03 37.16 0.22 0.97 16 3 O -0.30 -4.28 9.59 -18.80 -0.18 -4.47 16 4 C 0.33 5.05 7.49 -17.10 -0.13 4.92 16 5 N -0.53 -7.90 9.22 -13.30 -0.12 -8.03 16 6 C 0.14 1.82 11.17 -17.56 -0.20 1.63 16 7 C -0.18 -2.59 9.11 -39.44 -0.36 -2.95 16 8 C 0.02 0.34 4.81 -104.32 -0.50 -0.16 16 9 C 0.08 1.21 4.35 -4.98 -0.02 1.19 16 10 N -0.52 -9.27 4.34 -237.52 -1.03 -10.30 16 11 C 0.19 4.41 4.55 -4.98 -0.02 4.38 16 12 C -0.51 -13.12 8.24 -34.44 -0.28 -13.41 16 13 H 0.07 1.67 7.30 -52.49 -0.38 1.28 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -25.14 13.29 55.43 0.74 -24.40 16 16 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.07 1.08 4.75 -3.82 -0.02 1.06 16 21 C -0.03 -0.36 5.70 -29.52 -0.17 -0.53 16 22 C 0.22 3.20 15.43 -20.76 -0.32 2.88 16 23 N -0.46 -7.75 18.54 42.16 0.78 -6.97 16 24 C -0.08 -1.29 6.35 -39.20 -0.25 -1.54 16 25 Cl -0.04 -0.58 27.32 -51.86 -1.42 -2.00 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 31 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.14 1.81 8.05 -52.49 -0.42 1.39 16 33 H 0.08 1.02 6.05 -51.93 -0.31 0.70 16 34 H 0.05 0.70 7.88 -51.93 -0.41 0.29 16 35 H 0.04 0.90 6.86 -51.93 -0.36 0.54 16 36 H -0.01 -0.13 8.12 -51.93 -0.42 -0.55 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.10 1.84 6.57 -51.93 -0.34 1.50 16 39 H 0.03 0.50 8.01 -51.93 -0.42 0.08 16 40 H 0.10 1.05 6.85 -51.92 -0.36 0.69 16 41 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -30.28 367.73 -7.98 -38.27 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.51 Total: -2.66 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.76 Total: -0.96 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.36 Total: -49.70 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.18 Total: -4.47 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.42 Total: -2.00 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.28 -7.98 -38.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250385265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.823 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds