Wall clock time and date at job start Tue Mar 31 2020 15:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47458 * 2 1 4 4 C 1.35698 * 117.00223 * 180.02562 * 3 2 1 5 5 N 1.32245 * 119.68862 * 0.02562 * 4 3 2 6 6 C 1.31950 * 121.65905 * 179.97438 * 5 4 3 7 7 C 1.38074 * 120.85861 * 359.74101 * 6 5 4 8 8 C 1.38790 * 119.29866 * 0.51407 * 7 6 5 9 9 C 1.50690 * 120.76684 * 179.77518 * 8 7 6 10 10 N 1.46901 * 109.47155 * 254.85511 * 9 8 7 11 11 C 1.46901 * 110.99967 * 74.82101 * 10 9 8 12 12 C 1.50697 * 109.47094 * 190.00018 * 11 10 9 13 13 H 1.07999 * 120.00014 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00088 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00247 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00135 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47200 * 89.99866 * 16 14 12 18 18 H 1.48498 * 109.47470 * 209.99663 * 16 14 12 19 19 H 1.48501 * 109.47355 * 329.99853 * 16 14 12 20 20 C 1.46903 * 111.00118 * 198.77384 * 10 9 8 21 21 C 1.53005 * 109.46979 * 74.95043 * 20 10 9 22 22 C 1.47199 * 109.47217 * 174.78699 * 21 20 10 23 23 N 8.79447 * 142.31538 * 188.71587 * 3 1 2 24 24 C 1.38513 * 118.46892 * 359.49940 * 8 7 6 25 25 Cl 1.73594 * 120.45045 * 180.23513 * 24 8 7 26 26 H 1.09000 * 109.46825 * 300.00401 * 1 2 3 27 27 H 1.09002 * 109.46976 * 60.00099 * 1 2 3 28 28 H 1.08998 * 109.47588 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46825 * 239.99599 * 2 1 3 30 30 H 1.09002 * 109.46976 * 119.99901 * 2 1 3 31 31 H 1.08002 * 119.56876 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.35289 * 180.25896 * 7 6 5 33 33 H 1.09003 * 109.47470 * 134.85703 * 9 8 7 34 34 H 1.08996 * 109.47345 * 14.85366 * 9 8 7 35 35 H 1.08996 * 109.47290 * 310.00378 * 11 10 9 36 36 H 1.09001 * 109.46887 * 70.00199 * 11 10 9 37 37 H 0.96995 * 120.00388 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47154 * 194.94699 * 20 10 9 39 39 H 1.09000 * 109.46935 * 314.95264 * 20 10 9 40 40 H 1.09009 * 109.46730 * 294.78719 * 21 20 10 41 41 H 1.09001 * 109.47089 * 54.78513 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3517 1.5250 -0.0005 5 7 4.1516 0.4718 -0.0015 6 6 5.4649 0.5996 -0.0026 7 6 6.0550 1.8479 -0.0081 8 6 5.2510 2.9792 -0.0016 9 6 5.8600 4.3576 -0.0022 10 7 5.7340 4.9492 1.3366 11 6 6.6945 4.3470 2.2707 12 6 6.3768 4.7929 3.6747 13 1 5.5448 5.4575 3.8550 14 6 7.1488 4.3532 4.7290 15 7 8.1623 3.5442 4.5095 16 14 6.7546 4.9053 6.4694 17 1 5.8043 3.9473 7.0894 18 1 8.0047 4.9504 7.2697 19 1 6.1413 6.2573 6.4330 20 6 5.8944 6.4085 1.2845 21 6 4.6281 7.0404 0.7030 22 6 4.7379 8.5069 0.7663 23 7 4.8223 9.6388 0.8147 24 6 3.8760 2.8121 -0.0005 25 17 2.8221 4.1916 0.0014 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 6.0863 -0.2837 -0.0038 32 1 7.1308 1.9430 -0.0131 33 1 5.3399 4.9844 -0.7267 34 1 6.9139 4.2891 -0.2713 35 1 6.6276 3.2607 2.2106 36 1 7.7039 4.6639 2.0085 37 1 8.7057 3.2352 5.2511 38 1 6.0623 6.7917 2.2910 39 1 6.7476 6.6579 0.6537 40 1 4.5106 6.7292 -0.3351 41 1 3.7621 6.7156 1.2798 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250385265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:26 Heat of formation + Delta-G solvation = -0.414365 kcal Electronic energy + Delta-G solvation = -24860.275718 eV Core-core repulsion = 21186.906226 eV Total energy + Delta-G solvation = -3673.369492 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65576 -39.49250 -38.57002 -37.44262 -37.26769 -34.78451 -33.97967 -32.87799 -31.95194 -30.69837 -29.30373 -27.01435 -24.87054 -24.51554 -24.26261 -22.77226 -21.53120 -19.06409 -18.69192 -18.29199 -18.03171 -17.29463 -17.24472 -16.65666 -16.27284 -16.21873 -15.60302 -15.14570 -15.04819 -14.94336 -14.79042 -14.22909 -13.96780 -13.72893 -13.52161 -13.47290 -13.29632 -13.23475 -13.15460 -12.85015 -12.77262 -12.56500 -12.50465 -12.44006 -12.24297 -11.87520 -11.81479 -11.69960 -11.57455 -11.21110 -10.63736 -10.53843 -10.36463 -9.29805 -8.98421 -8.14016 -6.19485 0.05662 0.22295 1.29535 1.42443 1.44602 1.53052 1.75780 1.82703 2.00473 2.43561 2.66110 2.99297 3.21059 3.38446 3.57278 3.77414 3.97169 4.06479 4.14583 4.16512 4.23829 4.33286 4.36416 4.51497 4.59021 4.63967 4.75732 4.86633 4.89024 5.00866 5.01874 5.10615 5.24838 5.25598 5.36724 5.41109 5.43514 5.73641 6.13629 6.23378 6.34407 6.58834 6.66244 6.77748 6.96312 7.48832 8.96293 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.009264 B = 0.004762 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.706461 B = 5878.456090 C = 7374.936293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 O -0.309 6.309 4 C 0.313 3.687 5 N -0.542 5.542 6 C 0.137 3.863 7 C -0.193 4.193 8 C 0.009 3.991 9 C 0.084 3.916 10 N -0.525 5.525 11 C 0.212 3.788 12 C -0.515 4.515 13 H 0.063 0.937 14 C 0.010 3.990 15 N -0.928 5.928 16 Si 0.949 3.051 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.268 1.268 20 C 0.069 3.931 21 C -0.014 4.014 22 C 0.242 3.758 23 N -0.495 5.495 24 C -0.098 4.098 25 Cl -0.035 7.035 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.193 0.807 32 H 0.154 0.846 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.017 0.983 36 H -0.028 1.028 37 H 0.261 0.739 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.130 0.870 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.814 -7.142 -13.419 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 O -0.217 6.217 4 C 0.133 3.867 5 N -0.267 5.267 6 C -0.018 4.018 7 C -0.213 4.213 8 C 0.001 3.999 9 C -0.043 4.043 10 N -0.249 5.249 11 C 0.086 3.914 12 C -0.553 4.553 13 H 0.081 0.919 14 C -0.188 4.188 15 N -0.569 5.569 16 Si 0.775 3.225 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.060 4.060 21 C -0.054 4.054 22 C -0.075 4.075 23 N -0.174 5.174 24 C -0.128 4.128 25 Cl -0.006 7.006 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.210 0.790 32 H 0.172 0.828 33 H 0.128 0.872 34 H 0.075 0.925 35 H 0.035 0.965 36 H -0.010 1.010 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.148 0.852 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.737 -6.144 -13.082 18.005 hybrid contribution 1.337 0.481 1.043 1.763 sum -9.400 -5.663 -12.039 16.290 Atomic orbital electron populations 1.21822 0.91028 1.04189 1.03277 1.22805 0.96263 0.80009 1.02244 1.86282 1.15827 1.32052 1.87498 1.19612 0.85136 0.88637 0.93300 1.67487 1.07322 1.31512 1.20360 1.22912 0.88820 0.98450 0.91601 1.22184 1.02271 0.92185 1.04701 1.20142 0.90393 0.97466 0.91946 1.21194 0.99564 0.91031 0.92532 1.61849 1.53298 1.03326 1.06395 1.19385 0.87671 0.94203 0.90149 1.21486 1.13213 1.28265 0.92375 0.91899 1.25637 0.95111 0.95481 1.02583 1.70033 1.19285 1.34952 1.32632 0.85692 0.77358 0.78890 0.80548 1.20525 1.21245 1.19239 1.21811 0.94823 0.87886 1.01517 1.19410 1.01330 0.78928 1.05742 1.29508 0.91420 0.95365 0.91179 1.81197 1.10490 1.14571 1.11112 1.20709 0.91781 0.87435 1.12907 1.98322 1.64723 1.40737 1.96842 0.92046 0.91365 0.88107 0.91318 0.92357 0.78982 0.82837 0.87190 0.92547 0.96536 1.01027 0.93015 0.91127 0.93604 0.85192 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 2 C 0.06 1.32 6.03 71.98 0.43 1.75 16 3 O -0.31 -8.66 9.59 -90.18 -0.86 -9.52 16 4 C 0.31 9.45 7.49 84.81 0.63 10.08 16 5 N -0.54 -15.52 9.22 -308.86 -2.85 -18.36 16 6 C 0.14 3.47 11.17 84.64 0.95 4.41 16 7 C -0.19 -5.20 9.11 22.36 0.20 -5.00 16 8 C 0.01 0.27 4.81 -19.67 -0.09 0.18 16 9 C 0.08 2.32 4.35 85.55 0.37 2.69 16 10 N -0.52 -18.09 4.34 -905.38 -3.93 -22.02 16 11 C 0.21 9.69 4.55 85.56 0.39 10.08 16 12 C -0.51 -26.63 8.24 25.60 0.21 -26.42 16 13 H 0.06 3.21 7.30 -2.91 -0.02 3.19 16 14 C 0.01 0.55 5.46 84.65 0.46 1.01 16 15 N -0.93 -52.59 13.29 21.45 0.28 -52.30 16 16 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 20 C 0.07 2.10 4.75 86.30 0.41 2.51 16 21 C -0.01 -0.32 5.70 28.79 0.16 -0.16 16 22 C 0.24 6.68 15.43 89.44 1.38 8.06 16 23 N -0.50 -16.34 18.54 20.01 0.37 -15.97 16 24 C -0.10 -2.94 6.35 22.51 0.14 -2.80 16 25 Cl -0.04 -0.94 27.32 -2.72 -0.07 -1.02 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 30 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 31 H 0.19 3.47 8.06 -2.91 -0.02 3.44 16 32 H 0.15 3.73 8.05 -2.91 -0.02 3.71 16 33 H 0.11 2.39 6.05 -2.39 -0.01 2.38 16 34 H 0.06 1.50 7.88 -2.39 -0.02 1.48 16 35 H 0.02 0.82 6.86 -2.39 -0.02 0.81 16 36 H -0.03 -1.39 8.12 -2.39 -0.02 -1.41 16 37 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 38 H 0.07 2.58 6.57 -2.39 -0.02 2.57 16 39 H 0.05 1.29 8.01 -2.39 -0.02 1.27 16 40 H 0.13 2.29 6.85 -2.38 -0.02 2.27 16 41 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -65.18 367.73 2.41 -62.77 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.05 Total: 6.38 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 6.40 Total: 4.91 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -6.12 Total: -108.66 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.86 Total: -9.52 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.07 Total: -1.02 kcal Total: -65.18 2.41 -62.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250385265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.355 kcal (2) G-P(sol) polarization free energy of solvation -65.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds