Wall clock time and date at job start Tue Mar 31 2020 14:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38344 * 119.85929 * 2 1 4 4 C 1.37933 * 120.17778 * 180.02562 * 3 2 1 5 5 C 1.39641 * 119.90128 * 359.97438 * 4 3 2 6 6 C 1.47735 * 120.14041 * 179.97438 * 5 4 3 7 7 O 1.21471 * 119.99558 * 0.02562 * 6 5 4 8 8 O 1.34703 * 119.99960 * 179.97438 * 6 5 4 9 9 C 1.45204 * 117.00017 * 180.02562 * 8 6 5 10 10 H 1.09009 * 109.47356 * 330.00664 * 9 8 6 11 11 C 1.53003 * 109.46975 * 90.00080 * 9 8 6 12 12 C 1.50693 * 109.47584 * 210.00653 * 9 8 6 13 13 O 1.21283 * 119.99993 * 346.83266 * 12 9 8 14 14 N 1.34777 * 120.00459 * 166.83663 * 12 9 8 15 15 C 1.46500 * 119.99806 * 4.66120 * 14 12 9 16 16 C 1.46495 * 119.99998 * 184.38220 * 14 12 9 17 17 C 1.50704 * 109.47321 * 270.27431 * 16 14 12 18 18 H 1.07999 * 120.00020 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99771 * 179.97438 * 17 16 14 20 20 N 1.31510 * 120.00636 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99627 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47399 * 59.99985 * 21 19 17 23 23 H 1.48505 * 109.46978 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47142 * 299.99864 * 21 19 17 25 25 C 1.39582 * 119.72159 * 0.27921 * 5 4 3 26 26 C 1.38193 * 119.82202 * 359.44109 * 25 5 4 27 27 F 1.35101 * 119.95367 * 180.25736 * 26 25 5 28 28 H 1.09003 * 109.46961 * 90.00036 * 1 2 3 29 29 H 1.09001 * 109.47084 * 209.99593 * 1 2 3 30 30 H 1.08998 * 109.47168 * 330.00501 * 1 2 3 31 31 H 1.08006 * 119.91039 * 359.97438 * 3 2 1 32 32 H 1.08005 * 120.04919 * 179.97438 * 4 3 2 33 33 H 1.08995 * 109.46883 * 49.82216 * 11 9 8 34 34 H 1.08998 * 109.47165 * 169.82309 * 11 9 8 35 35 H 1.08997 * 109.47212 * 289.82301 * 11 9 8 36 36 H 1.08995 * 109.47190 * 266.44608 * 15 14 12 37 37 H 1.09003 * 109.47306 * 26.44211 * 15 14 12 38 38 H 1.09001 * 109.47589 * 146.44208 * 15 14 12 39 39 H 1.08990 * 109.47257 * 30.27698 * 16 14 12 40 40 H 1.09005 * 109.47230 * 150.27868 * 16 14 12 41 41 H 0.96992 * 120.00645 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.08600 * 179.72618 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1998 0.0000 4 6 3.5752 1.2075 -0.0005 5 6 4.2780 0.0008 -0.0005 6 6 5.7554 0.0029 -0.0017 7 8 6.3612 1.0557 -0.0021 8 8 6.4305 -1.1628 -0.0011 9 6 7.8804 -1.0848 -0.0018 10 1 8.1953 -0.1768 -0.5163 11 6 8.3902 -1.0564 1.4406 12 6 8.4479 -2.2868 -0.7117 13 8 7.7358 -3.2366 -0.9600 14 7 9.7469 -2.3065 -1.0706 15 6 10.6311 -1.2052 -0.6813 16 6 10.2759 -3.4321 -1.8447 17 6 10.7742 -4.4987 -0.9039 18 1 10.7035 -4.3530 0.1638 19 6 11.3194 -5.6612 -1.4064 20 7 11.4051 -5.8390 -2.7066 21 14 11.9365 -6.9836 -0.2403 22 1 10.8158 -7.4528 0.6136 23 1 12.4728 -8.1246 -1.0250 24 1 13.0120 -6.4245 0.6177 25 6 3.5789 -1.2073 -0.0059 26 6 2.1970 -1.2016 0.0005 27 9 1.5176 -2.3694 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6521 2.1330 -0.0004 32 1 4.1108 2.1453 -0.0010 33 1 7.9293 -1.8672 2.0048 34 1 9.4732 -1.1800 1.4457 35 1 8.1313 -0.1019 1.8988 36 1 10.6666 -0.4672 -1.4826 37 1 10.2508 -0.7374 0.2268 38 1 11.6339 -1.5915 -0.4985 39 1 9.4868 -3.8428 -2.4744 40 1 11.0985 -3.0874 -2.4715 41 1 11.7883 -6.6569 -3.0601 42 1 4.1165 -2.1440 -0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008260374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:13 Heat of formation + Delta-G solvation = -133.421581 kcal Electronic energy + Delta-G solvation = -26783.418410 eV Core-core repulsion = 22643.652166 eV Total energy + Delta-G solvation = -4139.766244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.16797 -40.87686 -39.44796 -38.66326 -36.44383 -34.92307 -33.53781 -32.84175 -31.61037 -30.96795 -28.15656 -27.69221 -26.20167 -24.61613 -23.52291 -23.24993 -22.18469 -20.85647 -18.97563 -18.58657 -17.40524 -16.58442 -16.54618 -16.44165 -16.15750 -16.09155 -15.85552 -15.52941 -15.05173 -14.59715 -14.39825 -14.14990 -13.84722 -13.68751 -13.56857 -13.19070 -12.96037 -12.82083 -12.53722 -12.31954 -12.10726 -12.08367 -12.01360 -11.75557 -11.65260 -11.37197 -11.21318 -10.90776 -10.77740 -10.69908 -10.56197 -10.17404 -9.67862 -9.40149 -9.07045 -8.93130 -8.45247 -7.74250 -6.06257 -4.11259 0.22101 0.79503 2.21558 2.34037 3.20977 3.27867 3.31459 3.35951 3.39790 3.74253 3.89968 4.20868 4.32783 4.42691 4.53566 4.66274 4.79836 4.82193 4.96437 5.07852 5.12917 5.14194 5.26754 5.28294 5.40471 5.50933 5.56981 5.61398 5.63712 5.68751 5.85628 5.86803 5.91485 6.04867 6.24047 6.30377 6.40546 6.96503 7.36762 7.43999 7.59140 7.89211 8.18944 8.27263 8.82801 8.97373 9.53626 11.01967 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.002729 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.063417 B =10257.445911 C =11230.790915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.087 4.087 3 C -0.108 4.108 4 C -0.061 4.061 5 C -0.100 4.100 6 C 0.510 3.490 7 O -0.504 6.504 8 O -0.320 6.320 9 C 0.072 3.928 10 H 0.106 0.894 11 C -0.172 4.172 12 C 0.507 3.493 13 O -0.517 6.517 14 N -0.596 5.596 15 C 0.066 3.934 16 C 0.247 3.753 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.088 4.088 26 C 0.085 3.915 27 F -0.131 7.131 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.264 0.736 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.042 17.041 6.913 25.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.088 4.088 3 C -0.125 4.125 4 C -0.079 4.079 5 C -0.101 4.101 6 C 0.354 3.646 7 O -0.394 6.394 8 O -0.234 6.234 9 C 0.013 3.987 10 H 0.123 0.877 11 C -0.229 4.229 12 C 0.291 3.709 13 O -0.392 6.392 14 N -0.329 5.329 15 C -0.078 4.078 16 C 0.129 3.871 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.107 4.107 26 C 0.066 3.934 27 F -0.110 7.110 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.151 16.616 6.613 24.779 hybrid contribution 0.554 -0.915 0.572 1.213 sum -16.597 15.701 7.185 23.950 Atomic orbital electron populations 1.20833 0.89634 1.03807 1.03341 1.20267 0.97503 0.91951 0.99051 1.20870 0.93378 0.97416 1.00882 1.21327 0.93947 0.97548 0.95089 1.18892 0.89463 0.94043 1.07695 1.21059 0.88586 0.82216 0.72734 1.90813 1.69967 1.32459 1.46125 1.86668 1.21101 1.32696 1.82985 1.22706 0.76850 1.00152 0.98956 0.87676 1.22337 1.03229 1.03624 0.93760 1.19751 0.83137 0.87447 0.80541 1.90713 1.58738 1.35789 1.53960 1.48078 1.07245 1.23346 1.54278 1.22003 0.96370 0.89904 0.99522 1.19346 0.94687 0.82187 0.90904 1.21368 1.40081 1.01902 0.93274 0.92411 1.24934 0.95829 0.98090 0.95223 1.69912 1.45127 1.27079 1.11257 0.86543 0.79032 0.81047 0.80710 1.20120 1.21159 1.20237 1.21617 0.92486 0.99992 0.96610 1.17367 0.89602 0.81392 1.05050 1.91525 1.79744 1.45789 1.93922 0.90157 0.90720 0.90505 0.83944 0.83646 0.90540 0.88877 0.91095 0.93311 0.91444 0.90293 0.93817 0.94576 0.92594 0.82466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.83 36.01 0.35 -0.34 16 2 C -0.09 -0.73 5.89 -104.46 -0.62 -1.34 16 3 C -0.11 -0.79 9.68 -39.65 -0.38 -1.18 16 4 C -0.06 -0.57 9.59 -39.17 -0.38 -0.95 16 5 C -0.10 -1.20 5.87 -104.99 -0.62 -1.82 16 6 C 0.51 7.44 7.87 34.61 0.27 7.71 16 7 O -0.50 -7.76 15.60 -19.24 -0.30 -8.06 16 8 O -0.32 -5.35 8.70 -47.08 -0.41 -5.76 16 9 C 0.07 1.19 2.17 -27.88 -0.06 1.13 16 10 H 0.11 1.60 6.75 -51.92 -0.35 1.24 16 11 C -0.17 -2.35 9.09 37.16 0.34 -2.01 16 12 C 0.51 10.85 7.00 -10.99 -0.08 10.77 16 13 O -0.52 -13.41 16.18 -13.73 -0.22 -13.63 16 14 N -0.60 -12.64 2.86 -182.96 -0.52 -13.16 16 15 C 0.07 1.02 9.85 59.85 0.59 1.61 16 16 C 0.25 6.45 5.14 -5.19 -0.03 6.42 16 17 C -0.53 -14.87 9.38 -34.44 -0.32 -15.20 16 18 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 21 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.09 -1.06 9.60 -39.10 -0.38 -1.43 16 26 C 0.09 0.92 7.23 -39.48 -0.29 0.63 16 27 F -0.13 -1.52 16.46 2.25 0.04 -1.49 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.46 7.63 -51.93 -0.40 0.06 16 30 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 32 H 0.15 1.21 7.65 -52.48 -0.40 0.81 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.19 5.49 -51.93 -0.28 0.90 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.86 4.14 -51.93 -0.21 0.65 16 38 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.04 1.28 7.49 -51.93 -0.39 0.90 16 40 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.16 2.03 7.61 -52.48 -0.40 1.63 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -34.38 365.36 -7.23 -41.61 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.35 Total: -1.67 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -1.68 Total: 5.66 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.21 Total: -38.97 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.93 Total: -27.46 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.38 -7.23 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008260374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.810 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds