Wall clock time and date at job start Tue Mar 31 2020 14:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38356 * 119.86005 * 2 1 4 4 C 1.37939 * 120.17749 * 180.27951 * 3 2 1 5 5 C 1.39641 * 119.90094 * 359.72579 * 4 3 2 6 6 C 1.47732 * 120.14002 * 179.97438 * 5 4 3 7 7 O 1.21470 * 120.00234 * 180.02562 * 6 5 4 8 8 O 1.34715 * 119.99528 * 0.02562 * 6 5 4 9 9 C 1.45199 * 116.99740 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.47250 * 29.99978 * 9 8 6 11 11 C 1.53002 * 109.47372 * 270.00337 * 9 8 6 12 12 C 1.50701 * 109.47246 * 149.99979 * 9 8 6 13 13 O 1.21283 * 119.99520 * 8.56888 * 12 9 8 14 14 N 1.34769 * 120.00284 * 188.56987 * 12 9 8 15 15 C 1.46503 * 120.00346 * 4.58454 * 14 12 9 16 16 C 1.46504 * 120.00346 * 184.58556 * 14 12 9 17 17 C 1.50697 * 109.47297 * 89.99461 * 16 14 12 18 18 H 1.07997 * 120.00040 * 0.02562 * 17 16 14 19 19 C 1.37874 * 119.99925 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99758 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00228 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47061 * 89.99413 * 21 19 17 23 23 H 1.48493 * 109.47230 * 209.99801 * 21 19 17 24 24 H 1.48505 * 109.46724 * 329.99559 * 21 19 17 25 25 C 1.39587 * 119.72573 * 359.97438 * 5 4 3 26 26 C 1.38203 * 119.81915 * 0.02562 * 25 5 4 27 27 F 1.35102 * 119.95175 * 179.97438 * 26 25 5 28 28 H 1.09000 * 109.46785 * 270.27164 * 1 2 3 29 29 H 1.08997 * 109.47468 * 30.27646 * 1 2 3 30 30 H 1.08999 * 109.46572 * 150.27491 * 1 2 3 31 31 H 1.07994 * 119.91185 * 0.02562 * 3 2 1 32 32 H 1.07994 * 120.04666 * 179.70381 * 4 3 2 33 33 H 1.08999 * 109.46806 * 307.15021 * 11 9 8 34 34 H 1.08997 * 109.46998 * 67.14973 * 11 9 8 35 35 H 1.09002 * 109.46741 * 187.15506 * 11 9 8 36 36 H 1.09002 * 109.47044 * 86.11453 * 15 14 12 37 37 H 1.08994 * 109.47761 * 206.12393 * 15 14 12 38 38 H 1.09001 * 109.46297 * 326.12023 * 15 14 12 39 39 H 1.08998 * 109.47502 * 210.00395 * 16 14 12 40 40 H 1.09006 * 109.46873 * 329.99655 * 16 14 12 41 41 H 0.97005 * 119.99730 * 180.02562 * 20 19 17 42 42 H 1.07994 * 120.08925 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5752 1.2075 -0.0058 5 6 4.2780 0.0009 -0.0059 6 6 5.7553 0.0029 -0.0127 7 8 6.3642 -1.0482 -0.0133 8 8 6.4272 1.1705 -0.0183 9 6 7.8773 1.0966 -0.0242 10 1 8.1927 0.1880 -0.5373 11 6 8.3927 1.0739 1.4162 12 6 8.4387 2.2982 -0.7398 13 8 7.7056 3.2090 -1.0623 14 7 9.7551 2.3606 -1.0214 15 6 10.6231 1.2188 -0.7229 16 6 10.3184 3.5703 -1.6262 17 6 10.7631 4.5149 -0.5395 18 1 10.6390 4.2414 0.4979 19 6 11.3293 5.7279 -0.8696 20 7 11.7179 6.5520 0.0788 21 14 11.5446 6.2008 -2.6639 22 1 10.3334 6.9191 -3.1352 23 1 12.7300 7.0841 -2.8043 24 1 11.7415 4.9749 -3.4786 25 6 3.5789 -1.2073 0.0004 26 6 2.1969 -1.2016 0.0062 27 9 1.5176 -2.3694 0.0118 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3632 -0.8925 -0.5096 31 1 1.6522 2.1330 0.0004 32 1 4.1107 2.1453 -0.0106 33 1 7.9734 1.9169 1.9654 34 1 8.0917 0.1423 1.8951 35 1 9.4803 1.1467 1.4140 36 1 10.6020 0.5183 -1.5577 37 1 11.6436 1.5688 -0.5679 38 1 10.2693 0.7197 0.1793 39 1 11.1733 3.3021 -2.2469 40 1 9.5606 4.0555 -2.2416 41 1 12.1159 7.4056 -0.1535 42 1 4.1165 -2.1439 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008260375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:16 Heat of formation + Delta-G solvation = -129.917356 kcal Electronic energy + Delta-G solvation = -26736.572127 eV Core-core repulsion = 22596.957838 eV Total energy + Delta-G solvation = -4139.614289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.26941 -40.90782 -39.50420 -38.74272 -36.50012 -35.06908 -33.50738 -32.80346 -31.72474 -30.97428 -28.45107 -28.06242 -26.30417 -24.68932 -23.53620 -23.02394 -22.11292 -20.88356 -18.98447 -18.66895 -17.31361 -17.01756 -16.66272 -16.56543 -16.25378 -16.02700 -15.90839 -15.64006 -15.11393 -14.75374 -14.32303 -14.11793 -13.91344 -13.76543 -13.62095 -13.22946 -13.04763 -12.79805 -12.50767 -12.37369 -12.34769 -12.19421 -12.10039 -11.84313 -11.68311 -11.52954 -11.38338 -10.94329 -10.80181 -10.71865 -10.54986 -10.19236 -9.59635 -9.42497 -9.09595 -9.06986 -8.63525 -7.82860 -6.13491 -4.13131 0.20599 0.77343 2.19767 2.27295 3.10659 3.26129 3.26626 3.32514 3.34593 3.66985 3.87221 4.21606 4.29920 4.35618 4.48620 4.65044 4.70580 4.78631 4.93318 5.02457 5.12632 5.13317 5.19847 5.22832 5.37389 5.50576 5.55502 5.64786 5.65047 5.73464 5.76064 5.84131 5.91048 6.01092 6.22773 6.28118 6.38386 6.61162 6.86724 7.19661 7.53452 7.56448 8.06411 8.40057 8.76447 8.89450 9.46123 10.99607 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.002574 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.082014 B =10873.451295 C =11551.235873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.085 4.085 3 C -0.106 4.106 4 C -0.061 4.061 5 C -0.100 4.100 6 C 0.510 3.490 7 O -0.505 6.505 8 O -0.318 6.318 9 C 0.074 3.926 10 H 0.106 0.894 11 C -0.172 4.172 12 C 0.513 3.487 13 O -0.520 6.520 14 N -0.591 5.591 15 C 0.066 3.934 16 C 0.216 3.784 17 C -0.532 4.532 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.266 1.266 25 C -0.086 4.086 26 C 0.082 3.918 27 F -0.134 7.134 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 -15.950 0.694 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.079 4.079 5 C -0.102 4.102 6 C 0.354 3.646 7 O -0.394 6.394 8 O -0.233 6.233 9 C 0.015 3.985 10 H 0.124 0.876 11 C -0.229 4.229 12 C 0.297 3.703 13 O -0.396 6.396 14 N -0.324 5.324 15 C -0.077 4.077 16 C 0.096 3.904 17 C -0.571 4.571 18 H 0.094 0.906 19 C -0.129 4.129 20 N -0.534 5.534 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.190 1.190 25 C -0.105 4.105 26 C 0.063 3.937 27 F -0.112 7.112 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.811 -15.599 0.538 23.683 hybrid contribution 0.368 0.019 -0.777 0.860 sum -17.444 -15.581 -0.240 23.390 Atomic orbital electron populations 1.20835 0.89625 1.03863 1.03314 1.20278 0.97514 0.91925 0.98901 1.21000 0.93756 0.97485 1.00155 1.21727 0.94277 0.98382 0.93542 1.18830 0.89508 0.94051 1.07764 1.21044 0.88616 0.82170 0.72762 1.90819 1.69877 1.32685 1.46031 1.86656 1.21063 1.32539 1.83060 1.22649 0.76918 0.99837 0.99084 0.87645 1.22319 1.03328 1.03737 0.93503 1.19746 0.82975 0.87208 0.80330 1.90693 1.57942 1.38754 1.52169 1.47719 1.06168 1.17208 1.61310 1.22020 0.96809 0.88725 1.00176 1.19744 0.93859 0.82198 0.94599 1.21305 1.40418 1.01200 0.94143 0.90629 1.24848 0.94783 0.95918 0.97382 1.69893 1.41415 1.09727 1.32340 0.86850 0.78185 0.79111 0.85556 1.19832 1.21016 1.19035 1.21164 0.92184 0.99140 0.98027 1.17217 0.89343 0.81343 1.05815 1.91507 1.79759 1.45849 1.94088 0.90166 0.90361 0.90813 0.83833 0.82938 0.90395 0.91104 0.88764 0.93244 0.89877 0.91305 0.94830 0.94285 0.92481 0.83156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.82 36.01 0.35 -0.33 16 2 C -0.09 -0.71 5.89 -104.46 -0.62 -1.32 16 3 C -0.11 -0.87 9.68 -39.65 -0.38 -1.25 16 4 C -0.06 -0.63 9.62 -39.17 -0.38 -1.01 16 5 C -0.10 -1.19 5.87 -104.99 -0.62 -1.81 16 6 C 0.51 7.33 7.87 34.61 0.27 7.60 16 7 O -0.50 -7.84 15.60 -19.24 -0.30 -8.14 16 8 O -0.32 -5.14 8.68 -47.17 -0.41 -5.55 16 9 C 0.07 1.19 2.17 -27.88 -0.06 1.13 16 10 H 0.11 1.54 6.73 -51.93 -0.35 1.19 16 11 C -0.17 -2.39 9.14 37.16 0.34 -2.05 16 12 C 0.51 10.53 7.03 -10.99 -0.08 10.46 16 13 O -0.52 -12.81 16.08 -13.95 -0.22 -13.03 16 14 N -0.59 -11.95 2.86 -182.95 -0.52 -12.47 16 15 C 0.07 0.98 9.80 59.85 0.59 1.57 16 16 C 0.22 5.18 4.25 -5.19 -0.02 5.16 16 17 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 18 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 21 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 25 C -0.09 -0.92 9.57 -39.09 -0.37 -1.30 16 26 C 0.08 0.80 7.23 -39.48 -0.29 0.52 16 27 F -0.13 -1.33 16.46 2.25 0.04 -1.30 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.07 0.43 7.63 -51.93 -0.40 0.03 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.15 1.62 7.61 -52.49 -0.40 1.22 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.25 5.46 -51.93 -0.28 0.96 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 38 H 0.07 0.86 4.31 -51.93 -0.22 0.64 16 39 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 40 H 0.04 1.00 6.79 -51.93 -0.35 0.65 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.15 1.55 7.65 -52.49 -0.40 1.15 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -34.42 361.64 -6.88 -41.30 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.32 Total: -0.54 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.70 Total: 4.10 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.25 Total: -38.83 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.93 Total: -26.72 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.42 -6.88 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008260375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.614 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds