Wall clock time and date at job start Tue Mar 31 2020 14:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38356 * 119.86005 * 2 1 4 4 C 1.37939 * 120.17749 * 180.27951 * 3 2 1 5 5 C 1.39641 * 119.90094 * 359.72579 * 4 3 2 6 6 C 1.47732 * 120.14002 * 179.97438 * 5 4 3 7 7 O 1.21470 * 120.00234 * 180.02562 * 6 5 4 8 8 O 1.34715 * 119.99528 * 0.02562 * 6 5 4 9 9 C 1.45199 * 116.99740 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.47250 * 29.99978 * 9 8 6 11 11 C 1.53002 * 109.47372 * 270.00337 * 9 8 6 12 12 C 1.50701 * 109.47246 * 149.99979 * 9 8 6 13 13 O 1.21283 * 119.99520 * 8.56888 * 12 9 8 14 14 N 1.34769 * 120.00284 * 188.56987 * 12 9 8 15 15 C 1.46503 * 120.00346 * 4.58454 * 14 12 9 16 16 C 1.46504 * 120.00346 * 184.58556 * 14 12 9 17 17 C 1.50697 * 109.47297 * 89.99461 * 16 14 12 18 18 H 1.07997 * 120.00040 * 0.02562 * 17 16 14 19 19 C 1.37874 * 119.99925 * 179.97438 * 17 16 14 20 20 N 1.31515 * 119.99758 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00228 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47061 * 89.99413 * 21 19 17 23 23 H 1.48493 * 109.47230 * 209.99801 * 21 19 17 24 24 H 1.48505 * 109.46724 * 329.99559 * 21 19 17 25 25 C 1.39587 * 119.72573 * 359.97438 * 5 4 3 26 26 C 1.38203 * 119.81915 * 0.02562 * 25 5 4 27 27 F 1.35102 * 119.95175 * 179.97438 * 26 25 5 28 28 H 1.09000 * 109.46785 * 270.27164 * 1 2 3 29 29 H 1.08997 * 109.47468 * 30.27646 * 1 2 3 30 30 H 1.08999 * 109.46572 * 150.27491 * 1 2 3 31 31 H 1.07994 * 119.91185 * 0.02562 * 3 2 1 32 32 H 1.07994 * 120.04666 * 179.70381 * 4 3 2 33 33 H 1.08999 * 109.46806 * 307.15021 * 11 9 8 34 34 H 1.08997 * 109.46998 * 67.14973 * 11 9 8 35 35 H 1.09002 * 109.46741 * 187.15506 * 11 9 8 36 36 H 1.09002 * 109.47044 * 86.11453 * 15 14 12 37 37 H 1.08994 * 109.47761 * 206.12393 * 15 14 12 38 38 H 1.09001 * 109.46297 * 326.12023 * 15 14 12 39 39 H 1.08998 * 109.47502 * 210.00395 * 16 14 12 40 40 H 1.09006 * 109.46873 * 329.99655 * 16 14 12 41 41 H 0.97005 * 119.99730 * 180.02562 * 20 19 17 42 42 H 1.07994 * 120.08925 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5752 1.2075 -0.0058 5 6 4.2780 0.0009 -0.0059 6 6 5.7553 0.0029 -0.0127 7 8 6.3642 -1.0482 -0.0133 8 8 6.4272 1.1705 -0.0183 9 6 7.8773 1.0966 -0.0242 10 1 8.1927 0.1880 -0.5373 11 6 8.3927 1.0739 1.4162 12 6 8.4387 2.2982 -0.7398 13 8 7.7056 3.2090 -1.0623 14 7 9.7551 2.3606 -1.0214 15 6 10.6231 1.2188 -0.7229 16 6 10.3184 3.5703 -1.6262 17 6 10.7631 4.5149 -0.5395 18 1 10.6390 4.2414 0.4979 19 6 11.3293 5.7279 -0.8696 20 7 11.7179 6.5520 0.0788 21 14 11.5446 6.2008 -2.6639 22 1 10.3334 6.9191 -3.1352 23 1 12.7300 7.0841 -2.8043 24 1 11.7415 4.9749 -3.4786 25 6 3.5789 -1.2073 0.0004 26 6 2.1969 -1.2016 0.0062 27 9 1.5176 -2.3694 0.0118 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3632 -0.8925 -0.5096 31 1 1.6522 2.1330 0.0004 32 1 4.1107 2.1453 -0.0106 33 1 7.9734 1.9169 1.9654 34 1 8.0917 0.1423 1.8951 35 1 9.4803 1.1467 1.4140 36 1 10.6020 0.5183 -1.5577 37 1 11.6436 1.5688 -0.5679 38 1 10.2693 0.7197 0.1793 39 1 11.1733 3.3021 -2.2469 40 1 9.5606 4.0555 -2.2416 41 1 12.1159 7.4056 -0.1535 42 1 4.1165 -2.1439 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008260375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:16 Heat of formation + Delta-G solvation = -149.986258 kcal Electronic energy + Delta-G solvation = -26737.442379 eV Core-core repulsion = 22596.957838 eV Total energy + Delta-G solvation = -4140.484542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.03235 -42.07847 -40.79675 -39.80223 -37.72556 -36.75939 -34.85679 -34.21760 -33.12549 -31.75650 -30.23520 -28.83062 -27.70320 -25.99593 -24.81771 -23.83325 -23.50968 -21.93456 -20.46757 -19.73114 -19.14065 -18.47339 -17.89192 -17.55267 -17.36124 -17.05196 -16.89203 -16.78273 -16.39522 -16.28058 -15.87178 -15.13711 -14.91607 -14.81083 -14.40163 -14.37909 -14.34861 -14.20138 -13.76677 -13.73409 -13.48023 -13.37085 -13.22378 -13.01092 -12.85579 -12.79164 -12.51497 -12.39593 -12.36671 -12.01904 -12.01034 -11.81609 -11.73736 -10.82989 -10.71015 -10.15578 -9.85371 -9.51053 -8.33657 -6.39190 -0.63122 0.01603 1.08630 1.23491 1.34674 1.38204 1.46284 1.52353 2.26088 2.31593 2.44381 3.00591 3.07462 3.31782 3.35392 3.58046 3.67413 3.75380 3.77998 3.91292 4.04284 4.19769 4.40820 4.53165 4.54790 4.57577 4.61387 4.74884 4.75618 4.82272 4.88332 4.90825 4.91273 5.05194 5.11133 5.14676 5.16590 5.22015 5.43033 5.50969 5.66819 6.21200 6.39707 6.52569 6.62474 7.12318 7.27563 8.82822 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.002574 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.082014 B =10873.451295 C =11551.235873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.098 4.098 4 C -0.066 4.066 5 C -0.121 4.121 6 C 0.511 3.489 7 O -0.520 6.520 8 O -0.333 6.333 9 C 0.081 3.919 10 H 0.126 0.874 11 C -0.166 4.166 12 C 0.504 3.496 13 O -0.573 6.573 14 N -0.596 5.596 15 C 0.058 3.942 16 C 0.222 3.778 17 C -0.537 4.537 18 H 0.034 0.966 19 C 0.013 3.987 20 N -0.943 5.943 21 Si 0.945 3.055 22 H -0.277 1.277 23 H -0.276 1.276 24 H -0.237 1.237 25 C -0.089 4.089 26 C 0.073 3.927 27 F -0.135 7.135 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.174 0.826 32 H 0.145 0.855 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.022 0.978 41 H 0.269 0.731 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.883 -17.314 -0.411 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.075 4.075 3 C -0.116 4.116 4 C -0.084 4.084 5 C -0.122 4.122 6 C 0.357 3.643 7 O -0.411 6.411 8 O -0.249 6.249 9 C 0.023 3.977 10 H 0.144 0.856 11 C -0.223 4.223 12 C 0.291 3.709 13 O -0.452 6.452 14 N -0.328 5.328 15 C -0.083 4.083 16 C 0.101 3.899 17 C -0.576 4.576 18 H 0.053 0.947 19 C -0.185 4.185 20 N -0.583 5.583 21 Si 0.768 3.232 22 H -0.202 1.202 23 H -0.201 1.201 24 H -0.161 1.161 25 C -0.108 4.108 26 C 0.054 3.946 27 F -0.114 7.114 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.192 0.808 32 H 0.163 0.837 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.961 -17.027 -0.555 25.490 hybrid contribution 0.636 0.408 -0.341 0.829 sum -18.324 -16.619 -0.896 24.754 Atomic orbital electron populations 1.20953 0.87408 1.04895 1.04438 1.20631 0.99067 0.91166 0.96659 1.21301 0.92783 0.98769 0.98738 1.21775 0.95384 0.97526 0.93722 1.18761 0.88079 0.95112 1.10244 1.21447 0.89473 0.81374 0.72009 1.90793 1.70348 1.32848 1.47078 1.86662 1.20995 1.33786 1.83428 1.22556 0.77321 0.97999 0.99793 0.85605 1.22310 1.03596 1.04372 0.91996 1.20542 0.82793 0.87959 0.79634 1.90653 1.59268 1.41014 1.54263 1.47797 1.06895 1.17405 1.60727 1.22354 0.95777 0.87492 1.02723 1.19455 0.93985 0.83094 0.93398 1.21520 1.40192 1.02421 0.93444 0.94749 1.25808 0.94404 0.95793 1.02502 1.70040 1.42774 1.10441 1.35021 0.85753 0.78030 0.79813 0.79610 1.20221 1.20086 1.16057 1.21155 0.92764 0.98687 0.98182 1.17328 0.89069 0.81908 1.06293 1.91503 1.79645 1.46073 1.94156 0.88823 0.88387 0.90778 0.80819 0.83697 0.91841 0.88706 0.88037 0.89996 0.90060 0.88922 0.92502 0.96038 0.92230 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.82 71.24 0.70 -0.30 16 2 C -0.07 -1.06 5.89 -19.76 -0.12 -1.18 16 3 C -0.10 -1.39 9.68 22.23 0.22 -1.18 16 4 C -0.07 -1.32 9.62 22.54 0.22 -1.10 16 5 C -0.12 -2.85 5.87 -20.10 -0.12 -2.96 16 6 C 0.51 14.65 7.87 70.33 0.55 15.20 16 7 O -0.52 -15.85 15.60 19.93 0.31 -15.53 16 8 O -0.33 -10.84 8.68 -49.90 -0.43 -11.28 16 9 C 0.08 2.58 2.17 29.85 0.06 2.65 16 10 H 0.13 3.47 6.73 -2.38 -0.02 3.45 16 11 C -0.17 -4.48 9.14 71.98 0.66 -3.82 16 12 C 0.50 20.88 7.03 87.66 0.62 21.50 16 13 O -0.57 -29.12 16.08 15.61 0.25 -28.87 16 14 N -0.60 -23.84 2.86 -851.13 -2.43 -26.27 16 15 C 0.06 1.60 9.80 127.77 1.25 2.85 16 16 C 0.22 10.61 4.25 85.63 0.36 10.97 16 17 C -0.54 -30.83 9.94 25.60 0.25 -30.57 16 18 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 19 C 0.01 0.77 5.47 84.65 0.46 1.23 16 20 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 21 Si 0.95 43.59 27.47 68.60 1.88 45.47 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 25 C -0.09 -1.87 9.57 22.59 0.22 -1.65 16 26 C 0.07 1.34 7.23 22.34 0.16 1.50 16 27 F -0.14 -2.52 16.46 44.97 0.74 -1.78 16 28 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.47 8.08 -2.39 -0.02 0.45 16 30 H 0.07 0.65 7.63 -2.39 -0.02 0.64 16 31 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.15 3.12 7.61 -2.91 -0.02 3.10 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.10 2.56 5.46 -2.39 -0.01 2.55 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 2.30 8.04 -2.39 -0.02 2.28 16 38 H 0.09 2.11 4.31 -2.39 -0.01 2.10 16 39 H 0.06 2.45 7.13 -2.39 -0.02 2.44 16 40 H 0.02 1.11 6.79 -2.38 -0.02 1.09 16 41 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 42 H 0.15 3.06 7.65 -2.91 -0.02 3.04 16 Total: -1.00 -77.64 361.64 7.12 -70.52 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.00 Total: 12.90 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 5.50 Total: 13.14 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -2.13 Total: -84.58 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: 0.13 Total: -55.68 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.74 Total: -1.78 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -77.64 7.12 -70.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008260375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.464 kcal (2) G-P(sol) polarization free energy of solvation -77.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds