Wall clock time and date at job start Tue Mar 31 2020 14:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38126 * 120.03791 * 2 1 4 4 C 1.38271 * 120.07109 * 179.97438 * 3 2 1 5 5 C 1.38314 * 120.14581 * 0.04832 * 4 3 2 6 6 C 1.38079 * 120.07476 * 359.95253 * 5 4 3 7 7 C 1.38888 * 120.03561 * 179.97438 * 2 1 3 8 8 N 1.39817 * 120.06970 * 0.04197 * 7 2 1 9 9 C 1.34777 * 119.99715 * 145.31488 * 8 7 2 10 10 O 1.21737 * 120.00128 * 4.41777 * 9 8 7 11 11 C 1.46207 * 119.99778 * 184.41022 * 9 8 7 12 12 C 1.35051 * 119.99896 * 180.02562 * 11 9 8 13 13 C 1.46954 * 120.00136 * 179.97438 * 12 11 9 14 14 C 1.40033 * 120.09720 * 359.72706 * 13 12 11 15 15 C 1.37598 * 119.89289 * 179.71849 * 14 13 12 16 16 C 1.39175 * 120.10292 * 0.55267 * 15 14 13 17 17 O 1.35569 * 119.90342 * 179.74132 * 16 15 14 18 18 C 1.34783 * 117.00533 * 185.40954 * 17 16 15 19 19 H 1.08001 * 119.99732 * 354.95970 * 18 17 16 20 20 C 1.38715 * 119.99978 * 174.95283 * 18 17 16 21 21 N 1.31513 * 120.00168 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99962 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47112 * 90.00004 * 22 20 18 24 24 H 1.48502 * 109.47231 * 210.00453 * 22 20 18 25 25 H 1.48504 * 109.46714 * 330.00348 * 22 20 18 26 26 C 1.39185 * 120.20261 * 359.72202 * 16 15 14 27 27 C 1.37590 * 120.10212 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.47182 * 270.02422 * 1 2 3 29 29 H 1.09007 * 109.47022 * 30.01813 * 1 2 3 30 30 H 1.09000 * 109.47233 * 150.01947 * 1 2 3 31 31 H 1.07994 * 119.96213 * 359.97438 * 3 2 1 32 32 H 1.07993 * 119.92441 * 180.02562 * 4 3 2 33 33 H 1.07999 * 119.96041 * 179.97438 * 5 4 3 34 34 H 1.08005 * 120.03588 * 180.30061 * 6 5 4 35 35 H 0.97001 * 120.00301 * 325.31810 * 8 7 2 36 36 H 1.08004 * 120.00569 * 0.02562 * 11 9 8 37 37 H 1.07994 * 120.00072 * 0.02562 * 12 11 9 38 38 H 1.08000 * 120.05537 * 359.97438 * 14 13 12 39 39 H 1.07999 * 119.94784 * 180.25538 * 15 14 13 40 40 H 0.96998 * 120.00183 * 179.97438 * 21 20 18 41 41 H 1.07997 * 119.94942 * 179.97438 * 26 16 15 42 42 H 1.08000 * 120.05151 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 0.0005 5 6 4.2764 0.0009 0.0001 6 6 3.5913 -1.1980 0.0000 7 6 2.2022 -1.2024 0.0005 8 7 1.5053 -2.4145 0.0002 9 6 2.0020 -3.4771 -0.6636 10 8 3.0949 -3.4062 -1.1952 11 6 1.2283 -4.7150 -0.7452 12 6 1.7262 -5.7799 -1.4099 13 6 0.9488 -7.0244 -1.4914 14 6 -0.3060 -7.1101 -0.8757 15 6 -1.0329 -8.2754 -0.9596 16 6 -0.5178 -9.3716 -1.6452 17 8 -1.2351 -10.5194 -1.7209 18 6 -0.6360 -11.5784 -2.3007 19 1 0.3389 -11.4670 -2.7520 20 6 -1.2714 -12.8114 -2.3177 21 7 -2.4587 -12.9469 -1.7685 22 14 -0.4407 -14.2793 -3.1207 23 1 0.3815 -14.9954 -2.1126 24 1 -1.4743 -15.1989 -3.6603 25 1 0.4310 -13.8102 -4.2277 26 6 0.7315 -9.2928 -2.2539 27 6 1.4632 -8.1300 -2.1797 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8899 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6584 2.1310 -0.0004 32 1 4.1193 2.1328 0.0010 33 1 5.3564 0.0050 0.0001 34 1 4.1349 -2.1312 0.0046 35 1 0.6644 -2.4907 0.4777 36 1 0.2585 -4.7778 -0.2738 37 1 2.6960 -5.7173 -1.8809 38 1 -0.7045 -6.2615 -0.3394 39 1 -2.0025 -8.3411 -0.4886 40 1 -2.9032 -13.8089 -1.7807 41 1 1.1274 -10.1461 -2.7845 42 1 2.4323 -8.0697 -2.6526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015352238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:57 Heat of formation + Delta-G solvation = -15.591248 kcal Electronic energy + Delta-G solvation = -24440.567676 eV Core-core repulsion = 20736.680163 eV Total energy + Delta-G solvation = -3703.887512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61763 -40.84006 -39.58083 -38.49178 -35.85670 -34.78027 -34.03484 -33.48003 -31.98170 -31.01513 -29.50861 -27.77034 -27.46107 -25.25194 -23.86259 -23.45375 -22.33758 -21.77824 -20.72599 -19.80681 -18.93901 -18.44590 -18.26442 -16.73853 -16.54334 -16.46310 -16.37933 -16.00982 -15.72768 -15.61166 -15.21253 -15.11470 -14.65050 -14.59987 -14.56297 -14.12649 -14.02672 -13.61333 -13.34149 -13.26853 -13.16180 -12.97647 -12.71658 -12.58780 -12.36864 -12.20753 -12.16143 -12.13254 -11.36138 -11.22384 -11.13888 -10.88790 -10.58925 -9.90238 -9.65168 -9.08156 -8.67970 -8.53086 -6.19140 -0.34889 0.37707 0.47342 0.57930 1.12757 1.35594 1.45513 1.52440 2.10884 2.14669 2.26738 2.83853 2.89372 3.16551 3.41344 3.69900 3.92262 3.95629 3.97426 4.07454 4.20909 4.28000 4.31885 4.42688 4.46308 4.55299 4.63145 4.64575 4.82642 4.83328 4.93276 5.00754 5.03845 5.18314 5.20320 5.29752 5.31329 5.41673 5.47870 5.56507 5.61659 5.63147 5.64693 5.78431 5.96472 6.09194 6.13376 6.45092 6.91318 7.13447 7.68017 8.68835 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.038826 B = 0.001803 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.992767 B =15526.064981 C =16144.016819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.117 4.117 3 C -0.109 4.109 4 C -0.135 4.135 5 C -0.121 4.121 6 C -0.144 4.144 7 C 0.125 3.875 8 N -0.658 5.658 9 C 0.550 3.450 10 O -0.572 6.572 11 C -0.249 4.249 12 C 0.026 3.974 13 C -0.173 4.173 14 C -0.035 4.035 15 C -0.208 4.208 16 C 0.131 3.869 17 O -0.219 6.219 18 C -0.417 4.417 19 H 0.106 0.894 20 C -0.018 4.018 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.252 1.252 26 C -0.250 4.250 27 C -0.038 4.038 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.425 0.575 36 H 0.157 0.843 37 H 0.126 0.874 38 H 0.162 0.838 39 H 0.124 0.876 40 H 0.275 0.725 41 H 0.125 0.875 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.647 25.711 4.517 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.120 4.120 3 C -0.127 4.127 4 C -0.153 4.153 5 C -0.139 4.139 6 C -0.164 4.164 7 C 0.030 3.970 8 N -0.303 5.303 9 C 0.344 3.656 10 O -0.453 6.453 11 C -0.269 4.269 12 C 0.006 3.994 13 C -0.174 4.174 14 C -0.053 4.053 15 C -0.227 4.227 16 C 0.079 3.921 17 O -0.124 6.124 18 C -0.493 4.493 19 H 0.123 0.877 20 C -0.217 4.217 21 N -0.549 5.549 22 Si 0.837 3.163 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.176 1.176 26 C -0.269 4.269 27 C -0.056 4.056 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.264 0.736 36 H 0.174 0.826 37 H 0.144 0.856 38 H 0.179 0.821 39 H 0.142 0.858 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.953 25.479 4.247 27.027 hybrid contribution -0.128 -1.276 -0.162 1.292 sum 7.825 24.203 4.085 25.762 Atomic orbital electron populations 1.20813 0.89016 1.03811 1.03530 1.20062 0.97607 0.91380 1.02935 1.21237 0.94381 0.97657 0.99405 1.21457 0.94683 0.98504 1.00655 1.21278 1.00799 0.91986 0.99855 1.21331 0.93427 0.99432 1.02204 1.17821 0.91413 0.85560 1.02160 1.43253 1.26200 1.08995 1.51822 1.18710 0.85495 0.84426 0.77000 1.90782 1.22506 1.83897 1.48132 1.22640 1.03059 0.92252 1.08997 1.22198 0.96912 0.89891 0.90402 1.18751 0.96911 0.94583 1.07178 1.21302 0.92400 0.96161 0.95421 1.20431 1.02824 0.92964 1.06451 1.20209 0.91140 0.87688 0.93086 1.83884 1.40793 1.17487 1.70193 1.21899 1.04376 0.86595 1.36399 0.87692 1.26605 0.96559 1.01051 0.97479 1.70145 1.15051 1.26444 1.43291 0.84589 0.77755 0.75465 0.78470 1.18808 1.19546 1.17603 1.21203 0.96634 1.00738 1.08361 1.21321 0.98760 0.90842 0.94715 0.89502 0.89849 0.91634 0.83121 0.83546 0.84719 0.86591 0.73569 0.82588 0.85606 0.82076 0.85841 0.91574 0.85767 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.47 71.24 0.67 -0.50 16 2 C -0.12 -1.91 5.90 -19.74 -0.12 -2.03 16 3 C -0.11 -1.52 9.70 22.25 0.22 -1.31 16 4 C -0.13 -2.00 10.04 22.30 0.22 -1.77 16 5 C -0.12 -2.28 10.04 22.25 0.22 -2.06 16 6 C -0.14 -3.44 8.69 22.39 0.19 -3.25 16 7 C 0.12 2.65 6.29 38.19 0.24 2.89 16 8 N -0.66 -12.59 4.74 -307.47 -1.46 -14.05 16 9 C 0.55 13.62 7.58 86.31 0.65 14.27 16 10 O -0.57 -18.41 13.64 -4.47 -0.06 -18.48 16 11 C -0.25 -5.44 9.41 23.61 0.22 -5.22 16 12 C 0.03 0.66 9.45 23.82 0.23 0.89 16 13 C -0.17 -5.22 5.87 -20.13 -0.12 -5.34 16 14 C -0.04 -1.06 9.40 22.55 0.21 -0.85 16 15 C -0.21 -8.09 9.97 22.34 0.22 -7.86 16 16 C 0.13 6.16 6.66 22.72 0.15 6.31 16 17 O -0.22 -12.54 9.74 -20.27 -0.20 -12.74 16 18 C -0.42 -23.29 9.48 67.93 0.64 -22.64 16 19 H 0.11 5.35 5.18 -2.91 -0.02 5.34 16 20 C -0.02 -0.99 5.49 84.85 0.47 -0.52 16 21 N -0.91 -53.97 13.67 21.62 0.30 -53.67 16 22 Si 1.02 41.23 29.55 68.60 2.03 43.26 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 24 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 25 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 26 C -0.25 -10.34 9.14 22.34 0.20 -10.14 16 27 C -0.04 -1.27 9.78 22.55 0.22 -1.05 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.66 8.09 -2.38 -0.02 0.64 16 30 H 0.06 0.69 7.17 -2.39 -0.02 0.67 16 31 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 32 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 33 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.12 3.27 6.20 -2.91 -0.02 3.25 16 35 H 0.43 5.21 7.83 -92.71 -0.73 4.49 16 36 H 0.16 2.46 6.07 -2.91 -0.02 2.44 16 37 H 0.13 3.29 7.52 -2.91 -0.02 3.27 16 38 H 0.16 3.41 6.16 -2.91 -0.02 3.39 16 39 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 40 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.12 5.21 5.61 -2.91 -0.02 5.19 16 42 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -73.24 361.61 5.71 -67.53 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.34 Total: 28.33 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 4.76 Total: -40.18 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -1.16 Total: -67.72 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.26 Total: -31.22 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -73.24 5.71 -67.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015352238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.939 kcal (2) G-P(sol) polarization free energy of solvation -73.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds