Wall clock time and date at job start Tue Mar 31 2020 14:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38289 * 119.92540 * 2 1 4 4 C 1.38105 * 120.06941 * 179.72818 * 3 2 1 5 5 C 1.38902 * 119.92736 * 0.25594 * 4 3 2 6 6 N 1.39810 * 120.07447 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00151 * 33.67861 * 6 5 4 8 8 O 1.21742 * 119.99560 * 5.22529 * 7 6 5 9 9 C 1.46215 * 120.00428 * 185.21378 * 7 6 5 10 10 C 1.35046 * 119.99996 * 180.02562 * 9 7 6 11 11 C 1.46948 * 119.99935 * 179.97438 * 10 9 7 12 12 C 1.40033 * 120.10008 * 359.73213 * 11 10 9 13 13 C 1.37597 * 119.89442 * 179.71675 * 12 11 10 14 14 C 1.39186 * 120.10447 * 0.57679 * 13 12 11 15 15 O 1.35557 * 119.89951 * 179.70251 * 14 13 12 16 16 C 1.34788 * 117.00071 * 185.91104 * 15 14 13 17 17 H 1.08001 * 119.99663 * 5.40394 * 16 15 14 18 18 C 1.38721 * 119.99814 * 185.40643 * 16 15 14 19 19 N 1.31512 * 119.99390 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00500 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47254 * 89.99650 * 20 18 16 22 22 H 1.48503 * 109.47285 * 210.00015 * 20 18 16 23 23 H 1.48507 * 109.46872 * 329.99728 * 20 18 16 24 24 C 1.39177 * 120.19755 * 359.67345 * 14 13 12 25 25 C 1.37599 * 120.10688 * 0.04927 * 24 14 13 26 26 C 1.38901 * 119.85306 * 0.02562 * 5 4 3 27 27 C 1.38101 * 119.92994 * 359.97438 * 26 5 4 28 28 H 1.08996 * 109.47643 * 89.99270 * 1 2 3 29 29 H 1.09000 * 109.47199 * 210.00134 * 1 2 3 30 30 H 1.09005 * 109.46767 * 329.98891 * 1 2 3 31 31 H 1.07990 * 119.96290 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.03448 * 180.27796 * 4 3 2 33 33 H 0.97000 * 120.00707 * 213.68477 * 6 5 4 34 34 H 1.07995 * 119.99625 * 0.02562 * 9 7 6 35 35 H 1.08004 * 120.00116 * 0.02562 * 10 9 7 36 36 H 1.07990 * 120.04826 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.95159 * 180.25442 * 13 12 11 38 38 H 0.97004 * 119.99626 * 180.02562 * 19 18 16 39 39 H 1.08008 * 119.94329 * 180.02562 * 24 14 13 40 40 H 1.08003 * 120.05004 * 179.97438 * 25 24 14 41 41 H 1.07999 * 120.03495 * 179.97438 * 26 5 4 42 42 H 1.08000 * 119.96790 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 0.0057 5 6 4.2740 -0.0001 0.0060 6 7 5.6720 -0.0001 0.0112 7 6 6.3436 0.9699 0.6627 8 8 5.7362 1.7909 1.3254 9 6 7.8015 1.0360 0.5740 10 6 8.4744 2.0077 1.2273 11 6 9.9397 2.0739 1.1386 12 6 10.6409 1.1271 0.3818 13 6 12.0125 1.1964 0.2969 14 6 12.7039 2.1985 0.9715 15 8 14.0556 2.2593 0.8898 16 6 14.6747 3.1748 1.6615 17 1 14.1051 3.7577 2.3701 18 6 16.0435 3.3682 1.5453 19 7 16.6473 4.2618 2.2979 20 14 17.0288 2.3596 0.3202 21 1 17.0689 3.0671 -0.9847 22 1 18.4125 2.1781 0.8277 23 1 16.3881 1.0315 0.1438 24 6 12.0116 3.1385 1.7291 25 6 10.6395 3.0805 1.8152 26 6 3.5779 -1.2021 0.0001 27 6 2.1969 -1.1986 -0.0056 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.6551 2.1327 0.0004 32 1 4.1161 2.1383 0.0102 33 1 6.1588 -0.6982 -0.4542 34 1 8.3403 0.3078 -0.0140 35 1 7.9356 2.7358 1.8157 36 1 10.1056 0.3462 -0.1377 37 1 12.5539 0.4691 -0.2899 38 1 17.6044 4.3974 2.2165 39 1 12.5522 3.9146 2.2506 40 1 10.1032 3.8102 2.4038 41 1 4.1161 -2.1384 -0.0001 42 1 1.6551 -2.1328 -0.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015411829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:01 Heat of formation + Delta-G solvation = 0.529434 kcal Electronic energy + Delta-G solvation = -24170.756318 eV Core-core repulsion = 20467.567851 eV Total energy + Delta-G solvation = -3703.188467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60185 -39.41330 -38.74377 -37.11515 -35.18538 -33.35937 -32.53925 -31.72052 -31.13610 -30.57239 -28.65218 -26.69368 -25.60028 -23.58977 -23.08730 -22.34934 -21.57724 -20.61469 -19.46158 -18.23203 -17.74511 -17.36071 -17.19683 -15.73444 -15.56005 -15.13375 -15.06365 -14.56815 -14.45555 -14.13759 -14.03580 -13.98534 -13.94946 -13.67018 -13.52003 -12.89127 -12.69185 -12.60008 -12.43795 -12.37640 -11.94134 -11.92645 -11.79042 -11.34537 -11.24126 -11.05542 -10.80398 -10.37593 -10.29969 -9.90169 -9.72368 -9.61041 -9.12087 -8.97455 -8.51401 -8.15982 -7.29542 -6.64413 -4.27810 0.77705 1.17747 1.22686 1.99555 2.39921 3.00185 3.08970 3.13179 3.26144 3.32188 3.66310 4.05571 4.37527 4.57305 4.60044 4.66093 4.79990 4.82295 4.89033 5.04238 5.10073 5.18395 5.30403 5.35768 5.38004 5.46949 5.52095 5.54322 5.65260 5.82111 5.90088 5.96014 6.09766 6.11052 6.24582 6.33241 6.38325 6.42208 6.47327 6.62344 6.86729 6.88654 7.04428 7.10517 7.31994 7.37312 7.58237 7.79847 8.10972 8.68673 9.28655 10.41703 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.048027 B = 0.001699 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.860069 B =16479.564528 C =16931.129559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.110 4.110 3 C -0.101 4.101 4 C -0.118 4.118 5 C 0.150 3.850 6 N -0.677 5.677 7 C 0.555 3.445 8 O -0.538 6.538 9 C -0.284 4.284 10 C 0.045 3.955 11 C -0.194 4.194 12 C -0.044 4.044 13 C -0.200 4.200 14 C 0.174 3.826 15 O -0.200 6.200 16 C -0.392 4.392 17 H 0.111 0.889 18 C 0.067 3.933 19 N -0.865 5.865 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.258 1.258 24 C -0.230 4.230 25 C -0.035 4.035 26 C -0.147 4.147 27 C -0.102 4.102 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.411 0.589 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.284 0.716 39 H 0.138 0.862 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.140 -9.822 -6.184 26.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.111 4.111 3 C -0.120 4.120 4 C -0.138 4.138 5 C 0.055 3.945 6 N -0.321 5.321 7 C 0.349 3.651 8 O -0.417 6.417 9 C -0.305 4.305 10 C 0.025 3.975 11 C -0.195 4.195 12 C -0.062 4.062 13 C -0.219 4.219 14 C 0.119 3.881 15 O -0.103 6.103 16 C -0.466 4.466 17 H 0.128 0.872 18 C -0.139 4.139 19 N -0.500 5.500 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.182 1.182 24 C -0.249 4.249 25 C -0.053 4.053 26 C -0.167 4.167 27 C -0.121 4.121 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.246 0.754 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.094 0.906 39 H 0.155 0.845 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.054 -9.220 -5.772 26.399 hybrid contribution 0.909 -0.611 -0.577 1.238 sum -23.145 -9.832 -6.348 25.935 Atomic orbital electron populations 1.20746 0.91275 1.02636 1.02096 1.19892 0.96083 0.93161 1.01919 1.20928 0.93570 0.97621 0.99846 1.21186 0.94135 0.97789 1.00674 1.17762 0.82836 0.94040 0.99848 1.43463 1.04463 1.30192 1.53942 1.18544 0.88619 0.80099 0.77820 1.90804 1.70353 1.40073 1.40420 1.22355 0.91440 1.05638 1.11059 1.22336 0.92534 0.93027 0.89589 1.18502 0.91551 1.01429 1.07973 1.20886 0.92923 0.96569 0.95798 1.20144 0.93660 1.01099 1.06982 1.19389 0.83388 0.92816 0.92500 1.83520 1.15081 1.53287 1.58404 1.20887 0.92333 1.16465 1.16959 0.87191 1.24551 0.95834 0.96103 0.97434 1.69620 1.11608 1.31072 1.37713 0.86152 0.78737 0.81358 0.80568 1.19632 1.20451 1.18164 1.21230 0.94252 1.02959 1.06460 1.21052 0.93615 0.95465 0.95183 1.20888 0.94532 0.96446 1.04873 1.20786 0.93303 0.97577 1.00400 0.91404 0.91729 0.91665 0.85872 0.84727 0.75368 0.85561 0.85650 0.86213 0.86069 0.90597 0.84453 0.86473 0.85773 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.11 -0.97 5.88 -104.58 -0.62 -1.59 16 3 C -0.10 -1.02 9.69 -39.61 -0.38 -1.40 16 4 C -0.12 -1.41 8.65 -39.38 -0.34 -1.75 16 5 C 0.15 1.68 6.27 -83.73 -0.53 1.16 16 6 N -0.68 -7.12 5.33 -11.18 -0.06 -7.18 16 7 C 0.56 7.40 7.47 -13.06 -0.10 7.30 16 8 O -0.54 -8.90 13.93 5.15 0.07 -8.83 16 9 C -0.28 -3.53 9.41 -37.51 -0.35 -3.89 16 10 C 0.04 0.63 9.45 -37.19 -0.35 0.28 16 11 C -0.19 -3.06 5.87 -105.03 -0.62 -3.68 16 12 C -0.04 -0.68 9.40 -39.14 -0.37 -1.04 16 13 C -0.20 -3.61 9.97 -39.46 -0.39 -4.00 16 14 C 0.17 3.72 6.66 -38.88 -0.26 3.47 16 15 O -0.20 -4.93 8.57 0.76 0.01 -4.93 16 16 C -0.39 -10.36 9.90 30.91 0.31 -10.06 16 17 H 0.11 2.97 5.51 -52.49 -0.29 2.68 16 18 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 19 N -0.86 -23.61 13.96 55.48 0.77 -22.84 16 20 Si 0.91 20.35 28.62 -169.99 -4.86 15.49 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 24 C -0.23 -4.61 9.11 -39.47 -0.36 -4.97 16 25 C -0.03 -0.59 9.78 -39.14 -0.38 -0.97 16 26 C -0.15 -1.35 9.96 -39.39 -0.39 -1.75 16 27 C -0.10 -0.87 9.69 -39.61 -0.38 -1.25 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.13 1.80 6.44 -52.49 -0.34 1.47 16 33 H 0.41 2.98 8.80 -40.82 -0.36 2.62 16 34 H 0.13 1.29 6.07 -52.49 -0.32 0.97 16 35 H 0.13 1.76 7.52 -52.48 -0.39 1.36 16 36 H 0.12 1.46 6.16 -52.49 -0.32 1.13 16 37 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.14 2.88 5.70 -52.48 -0.30 2.58 16 40 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -29.91 363.50 -8.68 -38.59 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.83 Total: 7.02 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -5.25 Total: -22.81 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.72 Total: -30.01 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.08 Total: -13.75 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.86 Total: 15.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.91 -8.68 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015411829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.122 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds