Wall clock time and date at job start Tue Mar 31 2020 14:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38289 * 119.92540 * 2 1 4 4 C 1.38105 * 120.06941 * 179.72818 * 3 2 1 5 5 C 1.38902 * 119.92736 * 0.25594 * 4 3 2 6 6 N 1.39810 * 120.07447 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00151 * 33.67861 * 6 5 4 8 8 O 1.21742 * 119.99560 * 5.22529 * 7 6 5 9 9 C 1.46215 * 120.00428 * 185.21378 * 7 6 5 10 10 C 1.35046 * 119.99996 * 180.02562 * 9 7 6 11 11 C 1.46948 * 119.99935 * 179.97438 * 10 9 7 12 12 C 1.40033 * 120.10008 * 359.73213 * 11 10 9 13 13 C 1.37597 * 119.89442 * 179.71675 * 12 11 10 14 14 C 1.39186 * 120.10447 * 0.57679 * 13 12 11 15 15 O 1.35557 * 119.89951 * 179.70251 * 14 13 12 16 16 C 1.34788 * 117.00071 * 185.91104 * 15 14 13 17 17 H 1.08001 * 119.99663 * 5.40394 * 16 15 14 18 18 C 1.38721 * 119.99814 * 185.40643 * 16 15 14 19 19 N 1.31512 * 119.99390 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00500 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47254 * 89.99650 * 20 18 16 22 22 H 1.48503 * 109.47285 * 210.00015 * 20 18 16 23 23 H 1.48507 * 109.46872 * 329.99728 * 20 18 16 24 24 C 1.39177 * 120.19755 * 359.67345 * 14 13 12 25 25 C 1.37599 * 120.10688 * 0.04927 * 24 14 13 26 26 C 1.38901 * 119.85306 * 0.02562 * 5 4 3 27 27 C 1.38101 * 119.92994 * 359.97438 * 26 5 4 28 28 H 1.08996 * 109.47643 * 89.99270 * 1 2 3 29 29 H 1.09000 * 109.47199 * 210.00134 * 1 2 3 30 30 H 1.09005 * 109.46767 * 329.98891 * 1 2 3 31 31 H 1.07990 * 119.96290 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.03448 * 180.27796 * 4 3 2 33 33 H 0.97000 * 120.00707 * 213.68477 * 6 5 4 34 34 H 1.07995 * 119.99625 * 0.02562 * 9 7 6 35 35 H 1.08004 * 120.00116 * 0.02562 * 10 9 7 36 36 H 1.07990 * 120.04826 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.95159 * 180.25442 * 13 12 11 38 38 H 0.97004 * 119.99626 * 180.02562 * 19 18 16 39 39 H 1.08008 * 119.94329 * 180.02562 * 24 14 13 40 40 H 1.08003 * 120.05004 * 179.97438 * 25 24 14 41 41 H 1.07999 * 120.03495 * 179.97438 * 26 5 4 42 42 H 1.08000 * 119.96790 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 0.0057 5 6 4.2740 -0.0001 0.0060 6 7 5.6720 -0.0001 0.0112 7 6 6.3436 0.9699 0.6627 8 8 5.7362 1.7909 1.3254 9 6 7.8015 1.0360 0.5740 10 6 8.4744 2.0077 1.2273 11 6 9.9397 2.0739 1.1386 12 6 10.6409 1.1271 0.3818 13 6 12.0125 1.1964 0.2969 14 6 12.7039 2.1985 0.9715 15 8 14.0556 2.2593 0.8898 16 6 14.6747 3.1748 1.6615 17 1 14.1051 3.7577 2.3701 18 6 16.0435 3.3682 1.5453 19 7 16.6473 4.2618 2.2979 20 14 17.0288 2.3596 0.3202 21 1 17.0689 3.0671 -0.9847 22 1 18.4125 2.1781 0.8277 23 1 16.3881 1.0315 0.1438 24 6 12.0116 3.1385 1.7291 25 6 10.6395 3.0805 1.8152 26 6 3.5779 -1.2021 0.0001 27 6 2.1969 -1.1986 -0.0056 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.6551 2.1327 0.0004 32 1 4.1161 2.1383 0.0102 33 1 6.1588 -0.6982 -0.4542 34 1 8.3403 0.3078 -0.0140 35 1 7.9356 2.7358 1.8157 36 1 10.1056 0.3462 -0.1377 37 1 12.5539 0.4691 -0.2899 38 1 17.6044 4.3974 2.2165 39 1 12.5522 3.9146 2.2506 40 1 10.1032 3.8102 2.4038 41 1 4.1161 -2.1384 -0.0001 42 1 1.6551 -2.1328 -0.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015411829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:01 Heat of formation + Delta-G solvation = -15.642983 kcal Electronic energy + Delta-G solvation = -24171.457607 eV Core-core repulsion = 20467.567851 eV Total energy + Delta-G solvation = -3703.889756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.53558 -40.94943 -39.64274 -38.60558 -36.09627 -34.80526 -34.24354 -32.48788 -32.01167 -31.86641 -29.97043 -27.73484 -27.09106 -24.72731 -23.92906 -23.78088 -22.59876 -21.63932 -20.71249 -19.76660 -19.19454 -18.51534 -18.32130 -16.74323 -16.61306 -16.40723 -16.23201 -15.84635 -15.74259 -15.59897 -15.31880 -15.27645 -14.59494 -14.56086 -14.39509 -14.30368 -14.27292 -14.06500 -13.43273 -13.22969 -13.21449 -12.94755 -12.73828 -12.65447 -12.53479 -12.35749 -12.01533 -11.93728 -11.34438 -11.26697 -11.17456 -10.91553 -10.68862 -9.92918 -9.86630 -8.99841 -8.72282 -8.54789 -6.26518 -0.38523 0.34707 0.47418 0.54169 1.09763 1.32282 1.36935 1.51892 2.11088 2.24249 2.25665 2.77642 2.88225 3.01399 3.11844 3.67619 3.90118 3.95584 4.03447 4.04446 4.13827 4.23331 4.30418 4.43110 4.46222 4.50789 4.60647 4.65365 4.82298 4.86222 4.89175 5.07368 5.12103 5.15123 5.18601 5.25593 5.34093 5.40019 5.43784 5.55356 5.58829 5.68628 5.71907 5.77223 5.81978 6.11734 6.13105 6.46721 6.78361 7.14252 7.49325 8.56069 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.048027 B = 0.001699 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.860069 B =16479.564528 C =16931.129559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C -0.115 4.115 4 C -0.141 4.141 5 C 0.124 3.876 6 N -0.659 5.659 7 C 0.549 3.451 8 O -0.574 6.574 9 C -0.241 4.241 10 C 0.019 3.981 11 C -0.163 4.163 12 C -0.038 4.038 13 C -0.194 4.194 14 C 0.137 3.863 15 O -0.232 6.232 16 C -0.404 4.404 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.916 5.916 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.268 1.268 23 H -0.258 1.258 24 C -0.244 4.244 25 C -0.045 4.045 26 C -0.142 4.142 27 C -0.105 4.105 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.428 0.572 34 H 0.162 0.838 35 H 0.123 0.877 36 H 0.169 0.831 37 H 0.140 0.860 38 H 0.287 0.713 39 H 0.113 0.887 40 H 0.138 0.862 41 H 0.150 0.850 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.916 -13.541 -8.186 32.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.111 4.111 3 C -0.133 4.133 4 C -0.162 4.162 5 C 0.030 3.970 6 N -0.304 5.304 7 C 0.342 3.658 8 O -0.455 6.455 9 C -0.261 4.261 10 C 0.000 4.000 11 C -0.163 4.163 12 C -0.055 4.055 13 C -0.213 4.213 14 C 0.086 3.914 15 O -0.138 6.138 16 C -0.480 4.480 17 H 0.100 0.900 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.192 1.192 23 H -0.182 1.182 24 C -0.263 4.263 25 C -0.063 4.063 26 C -0.162 4.162 27 C -0.123 4.123 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.267 0.733 34 H 0.179 0.821 35 H 0.141 0.859 36 H 0.186 0.814 37 H 0.158 0.842 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.156 0.844 41 H 0.168 0.832 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -27.904 -12.983 -7.802 31.751 hybrid contribution 1.289 0.380 -0.002 1.344 sum -26.615 -12.603 -7.804 30.465 Atomic orbital electron populations 1.20806 0.89288 1.03524 1.03080 1.20270 0.97641 0.92812 1.00397 1.21122 0.93093 0.98907 1.00191 1.21164 0.95101 0.97431 1.02467 1.17953 0.83015 0.94578 1.01485 1.43273 1.04511 1.29691 1.52930 1.18743 0.89012 0.80270 0.77777 1.90811 1.71088 1.41578 1.42009 1.22681 0.91082 1.04251 1.08117 1.22196 0.91295 0.94713 0.91837 1.18790 0.92561 0.99730 1.05265 1.21373 0.91919 0.97145 0.95096 1.20502 0.94791 1.00035 1.05946 1.19974 0.82892 0.94455 0.94065 1.83471 1.16498 1.54052 1.59806 1.20743 0.92777 1.16919 1.17538 0.89960 1.25333 0.96698 0.97313 0.99304 1.69708 1.12011 1.33606 1.40251 0.85207 0.77523 0.79601 0.78368 1.19086 1.19234 1.18220 1.21225 0.95620 1.02694 1.06752 1.21296 0.92399 0.96717 0.95849 1.21195 0.95020 0.96568 1.03421 1.21204 0.93325 0.98603 0.99196 0.90262 0.90335 0.91364 0.85020 0.87111 0.73275 0.82060 0.85934 0.81413 0.84244 0.90364 0.86935 0.84391 0.83200 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 71.24 0.71 -0.30 16 2 C -0.11 -1.66 5.88 -19.84 -0.12 -1.77 16 3 C -0.11 -2.17 9.69 22.25 0.22 -1.95 16 4 C -0.14 -3.28 8.65 22.40 0.19 -3.09 16 5 C 0.12 2.48 6.27 38.19 0.24 2.72 16 6 N -0.66 -11.60 5.33 -307.47 -1.64 -13.24 16 7 C 0.55 12.97 7.47 86.31 0.64 13.62 16 8 O -0.57 -18.27 13.93 -4.48 -0.06 -18.33 16 9 C -0.24 -4.88 9.41 23.61 0.22 -4.66 16 10 C 0.02 0.48 9.45 23.82 0.23 0.71 16 11 C -0.16 -4.68 5.87 -20.13 -0.12 -4.80 16 12 C -0.04 -1.01 9.40 22.55 0.21 -0.80 16 13 C -0.19 -6.62 9.97 22.35 0.22 -6.40 16 14 C 0.14 6.01 6.66 22.72 0.15 6.16 16 15 O -0.23 -11.98 8.57 -20.19 -0.17 -12.15 16 16 C -0.40 -22.95 9.90 67.94 0.67 -22.28 16 17 H 0.08 4.92 5.51 -2.91 -0.02 4.91 16 18 C 0.01 0.74 5.49 84.86 0.47 1.20 16 19 N -0.92 -53.26 13.96 21.62 0.30 -52.96 16 20 Si 0.97 43.53 28.62 68.60 1.96 45.49 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 24 C -0.24 -10.24 9.11 22.34 0.20 -10.03 16 25 C -0.04 -1.50 9.78 22.55 0.22 -1.27 16 26 C -0.14 -2.09 9.96 22.40 0.22 -1.87 16 27 C -0.10 -1.40 9.69 22.25 0.22 -1.18 16 28 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.52 8.09 -2.39 -0.02 0.50 16 30 H 0.07 0.59 8.08 -2.38 -0.02 0.57 16 31 H 0.13 2.09 8.06 -2.92 -0.02 2.07 16 32 H 0.11 3.03 6.44 -2.91 -0.02 3.01 16 33 H 0.43 4.19 8.80 -92.71 -0.82 3.37 16 34 H 0.16 2.13 6.07 -2.91 -0.02 2.11 16 35 H 0.12 3.20 7.52 -2.91 -0.02 3.17 16 36 H 0.17 2.90 6.16 -2.92 -0.02 2.88 16 37 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.29 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.11 5.24 5.70 -2.91 -0.02 5.22 16 40 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 42 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -71.21 363.50 5.45 -65.77 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.25 Total: 21.42 kcal Atomic # 6 Polarization: -40.80 SS G_CDS: 4.81 Total: -36.00 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -1.34 Total: -66.20 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.24 Total: -30.48 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.96 Total: 45.49 kcal Total: -71.21 5.45 -65.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015411829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.123 kcal (2) G-P(sol) polarization free energy of solvation -71.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds