Wall clock time and date at job start Tue Mar 31 2020 13:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35897 * 117.00481 * 180.02562 * 11 10 9 13 13 C 1.38821 * 120.01275 * 359.72205 * 12 11 10 14 14 C 1.38173 * 120.08789 * 179.72138 * 13 12 11 15 15 C 1.38157 * 120.13180 * 0.55631 * 14 13 12 16 16 C 1.38929 * 120.03217 * 359.71781 * 15 14 13 17 17 N 1.39666 * 120.04760 * 179.97438 * 16 15 14 18 18 C 1.46504 * 119.99487 * 0.02803 * 17 16 15 19 19 C 1.52579 * 109.22667 * 275.59365 * 18 17 16 20 20 C 1.53114 * 109.94681 * 168.96639 * 19 18 17 21 21 S 1.81745 * 108.81045 * 63.08468 * 20 19 18 22 22 O 1.42102 * 109.47075 * 190.72042 * 21 20 19 23 23 C 1.81750 * 102.22327 * 306.71558 * 21 20 19 24 24 C 1.52584 * 109.22572 * 154.40236 * 18 17 16 25 25 C 1.38564 * 120.02346 * 180.02562 * 12 11 10 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.08000 * 119.95233 * 359.97438 * 13 12 11 32 32 H 1.08007 * 119.93154 * 180.25528 * 14 13 12 33 33 H 1.07999 * 119.98069 * 179.74516 * 15 14 13 34 34 H 0.96996 * 120.00573 * 180.02562 * 17 16 15 35 35 H 1.09000 * 109.22491 * 34.99865 * 18 17 16 36 36 H 1.09001 * 109.39114 * 289.15167 * 19 18 17 37 37 H 1.08997 * 109.39068 * 48.85622 * 19 18 17 38 38 H 1.09004 * 109.60776 * 303.28085 * 20 19 18 39 39 H 1.09002 * 109.68758 * 182.93912 * 20 19 18 40 40 H 1.08994 * 109.57476 * 293.45709 * 23 21 20 41 41 H 1.08995 * 109.57917 * 173.06911 * 23 21 20 42 42 H 1.09008 * 109.38475 * 311.14242 * 24 18 17 43 43 H 1.08995 * 109.39547 * 70.84202 * 24 18 17 44 44 H 1.07998 * 120.06257 * 359.97421 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2706 -6.0395 0.0004 13 6 3.6570 -5.9673 -0.0044 14 6 4.4109 -7.1252 0.0019 15 6 3.7880 -8.3583 0.0013 16 6 2.4010 -8.4367 0.0004 17 7 1.7710 -9.6832 -0.0006 18 6 2.5730 -10.9092 -0.0002 19 6 2.9671 -11.2524 -1.4337 20 6 4.0232 -12.3610 -1.4339 21 16 3.2983 -13.8611 -0.7078 22 8 4.3236 -14.8163 -0.4720 23 6 2.6621 -13.2505 0.8815 24 6 1.7601 -12.0412 0.6211 25 6 1.6419 -7.2743 -0.0007 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 4.1468 -5.0047 -0.0090 32 1 5.4894 -7.0660 0.0023 33 1 4.3798 -9.2618 0.0021 34 1 0.8025 -9.7372 -0.0016 35 1 3.4744 -10.7482 0.5912 36 1 2.0866 -11.5904 -1.9800 37 1 3.3741 -10.3655 -1.9193 38 1 4.8829 -12.0474 -0.8417 39 1 4.3396 -12.5665 -2.4566 40 1 3.4952 -12.9543 1.5188 41 1 2.0870 -14.0365 1.3709 42 1 1.3286 -11.7021 1.5630 43 1 0.9587 -12.3274 -0.0600 44 1 0.5635 -7.3323 -0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042353842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:08 Heat of formation + Delta-G solvation = -61.596782 kcal Electronic energy + Delta-G solvation = -23955.989462 eV Core-core repulsion = 20385.550951 eV Total energy + Delta-G solvation = -3570.438511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.96828 -38.65955 -36.82517 -36.06147 -33.67421 -33.29615 -32.04375 -30.83867 -29.53937 -28.65658 -26.23263 -24.89828 -23.81623 -22.63435 -22.05123 -20.86025 -20.31625 -18.23481 -17.82859 -16.86112 -16.37837 -16.00990 -15.65236 -15.51198 -15.36176 -15.28376 -14.97090 -14.82397 -14.57929 -14.38418 -13.57263 -13.42364 -13.21576 -12.99357 -12.89878 -12.59751 -12.31011 -12.10137 -12.06962 -11.94785 -11.57353 -11.47146 -11.33819 -11.09927 -10.88544 -10.77353 -10.45351 -10.26056 -10.02579 -9.74745 -9.64523 -9.30370 -8.72429 -8.44466 -7.99190 -7.39941 -6.09817 -4.14335 1.07984 1.67203 1.81973 2.04641 3.00748 3.28995 3.33287 3.34759 3.36530 3.96696 4.05317 4.08637 4.33136 4.42065 4.44222 4.53930 4.63251 4.81818 4.89886 5.05167 5.15709 5.26471 5.28105 5.31755 5.41816 5.47174 5.50984 5.53964 5.62103 5.71458 5.80327 6.07065 6.07526 6.07848 6.35601 6.59066 6.64020 6.71417 6.85516 7.31008 7.51072 7.61026 7.65187 7.83309 8.10056 8.24986 8.91047 9.49785 11.01691 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.045405 B = 0.001822 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.519002 B =15366.138469 C =15700.675713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.188 3.812 13 C -0.262 4.262 14 C -0.038 4.038 15 C -0.246 4.246 16 C 0.247 3.753 17 N -0.742 5.742 18 C 0.141 3.859 19 C -0.114 4.114 20 C -0.436 4.436 21 S 1.235 4.765 22 O -0.857 6.857 23 C -0.437 4.437 24 C -0.104 4.104 25 C -0.236 4.236 26 H 0.264 0.736 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.401 0.599 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.688 -28.369 -2.399 28.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.140 3.860 13 C -0.283 4.283 14 C -0.056 4.056 15 C -0.269 4.269 16 C 0.145 3.855 17 N -0.372 5.372 18 C 0.034 3.966 19 C -0.154 4.154 20 C -0.574 4.574 21 S 1.433 4.567 22 O -0.852 6.852 23 C -0.575 4.575 24 C -0.143 4.143 25 C -0.259 4.259 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.236 0.764 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.136 0.864 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.435 -29.272 -2.753 29.502 hybrid contribution 2.096 1.935 1.352 3.157 sum 4.532 -27.336 -1.401 27.745 Atomic orbital electron populations 1.69969 1.06086 1.27052 1.49670 1.24991 0.94916 0.99366 0.94933 0.86543 0.79492 0.82598 0.78713 1.20102 1.21127 1.20109 1.20939 0.93025 0.90238 1.52277 0.92414 1.19122 0.94194 0.89047 0.98833 1.23322 0.97005 0.80705 0.99754 1.86148 1.36750 1.13303 1.86632 1.18833 0.89839 0.86890 0.90456 1.21165 0.93051 0.99618 1.14448 1.20622 0.98996 0.91507 0.94509 1.20407 0.92344 0.97782 1.16323 1.17312 0.91409 0.84533 0.92289 1.44503 1.07950 1.01580 1.83205 1.20928 0.95249 0.84639 0.95736 1.21702 0.98017 0.98048 0.97672 1.27569 1.06668 1.13379 1.09832 1.70534 1.07224 0.83045 0.95933 1.93125 1.60917 1.47869 1.83326 1.27548 1.06756 1.05375 1.17782 1.21383 0.97757 0.92375 1.02789 1.19665 0.99681 0.88824 1.17737 0.92671 0.95420 0.95425 0.93099 0.93080 0.85571 0.86459 0.86831 0.76428 0.90424 0.89824 0.89927 0.89434 0.86506 0.89324 0.86381 0.90008 0.89533 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.66 5.34 -27.89 -0.15 0.51 16 10 C 0.07 1.43 4.68 37.16 0.17 1.60 16 11 O -0.32 -6.52 10.13 -19.42 -0.20 -6.71 16 12 C 0.19 3.28 6.68 -39.25 -0.26 3.02 16 13 C -0.26 -4.18 9.04 -39.39 -0.36 -4.54 16 14 C -0.04 -0.50 10.03 -39.64 -0.40 -0.90 16 15 C -0.25 -3.00 8.79 -39.36 -0.35 -3.34 16 16 C 0.25 2.97 6.60 -83.81 -0.55 2.42 16 17 N -0.74 -6.02 5.23 -52.60 -0.27 -6.29 16 18 C 0.14 0.85 1.91 -68.36 -0.13 0.72 16 19 C -0.11 -0.58 5.19 -26.89 -0.14 -0.72 16 20 C -0.44 -2.26 6.44 37.22 0.24 -2.02 16 21 S 1.23 6.01 13.75 -107.50 -1.48 4.53 16 22 O -0.86 -10.41 18.14 -35.23 -0.64 -11.05 16 23 C -0.44 -1.94 6.44 37.21 0.24 -1.70 16 24 C -0.10 -0.39 5.20 -26.89 -0.14 -0.53 16 25 C -0.24 -3.47 9.83 -39.24 -0.39 -3.86 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 30 H 0.05 1.05 7.65 -51.93 -0.40 0.66 16 31 H 0.13 2.01 6.29 -52.49 -0.33 1.68 16 32 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.11 1.17 6.17 -52.49 -0.32 0.84 16 34 H 0.40 2.59 8.61 -40.82 -0.35 2.24 16 35 H 0.08 0.58 6.40 -51.93 -0.33 0.25 16 36 H 0.08 0.23 8.05 -51.93 -0.42 -0.19 16 37 H 0.08 0.59 7.73 -51.93 -0.40 0.19 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.36 8.14 -51.92 -0.42 -0.07 16 43 H 0.09 0.09 8.05 -51.93 -0.42 -0.32 16 44 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -36.46 367.91 -10.66 -47.13 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.72 Total: -0.98 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -2.62 Total: -22.73 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.46 Total: -31.97 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.84 Total: -17.77 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 6.01 SS G_CDS: -1.48 Total: 4.53 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.46 -10.66 -47.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042353842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.471 kcal (2) G-P(sol) polarization free energy of solvation -36.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds