Wall clock time and date at job start Tue Mar 31 2020 13:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34769 * 125.75594 * 2 1 4 4 C 1.40652 * 106.63905 * 180.02562 * 3 2 1 5 5 C 1.34888 * 107.15718 * 0.05866 * 4 3 2 6 6 O 1.33823 * 108.30016 * 359.91107 * 5 4 3 7 7 C 1.50934 * 123.89395 * 179.97438 * 5 4 3 8 8 C 1.53335 * 108.43376 * 343.27745 * 7 5 4 9 9 C 1.52995 * 109.45892 * 290.00520 * 8 7 5 10 10 C 1.52999 * 109.46057 * 170.04864 * 8 7 5 11 11 C 1.53123 * 109.53825 * 50.03035 * 8 7 5 12 12 C 1.50638 * 128.28173 * 180.11099 * 4 3 2 13 13 H 1.08995 * 109.71714 * 283.26070 * 12 4 3 14 14 N 1.46504 * 109.68188 * 43.79939 * 12 4 3 15 15 C 1.34775 * 119.99561 * 273.91794 * 14 12 4 16 16 O 1.21282 * 120.00577 * 0.02562 * 15 14 12 17 17 C 1.50703 * 119.99768 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47349 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99849 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00065 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46755 * 90.00066 * 23 21 19 25 25 H 1.48495 * 109.46931 * 210.00080 * 23 21 19 26 26 H 1.48500 * 109.46738 * 330.00322 * 23 21 19 27 27 H 1.09007 * 109.47168 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47415 * 299.99921 * 1 2 3 29 29 H 1.09003 * 109.47390 * 60.00340 * 1 2 3 30 30 H 1.08003 * 126.68083 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.64603 * 223.59284 * 7 5 4 32 32 H 1.09002 * 109.63954 * 102.95930 * 7 5 4 33 33 H 1.09004 * 109.47024 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47439 * 300.07326 * 9 8 7 35 35 H 1.09004 * 109.46955 * 60.07312 * 9 8 7 36 36 H 1.09003 * 109.47315 * 299.93402 * 10 8 7 37 37 H 1.09000 * 109.46755 * 59.92600 * 10 8 7 38 38 H 1.08996 * 109.47524 * 179.97438 * 10 8 7 39 39 H 1.09000 * 109.47827 * 170.02914 * 11 8 7 40 40 H 1.08993 * 109.49286 * 50.00245 * 11 8 7 41 41 H 0.96993 * 120.00065 * 93.92053 * 14 12 4 42 42 H 1.09005 * 109.46867 * 60.00428 * 17 15 14 43 43 H 1.09000 * 109.47235 * 300.00468 * 17 15 14 44 44 H 0.97005 * 119.99878 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2945 1.0937 0.0000 4 6 3.6234 0.6330 -0.0006 5 6 3.5773 -0.7151 -0.0023 6 8 2.2931 -1.0916 -0.0007 7 6 4.8006 -1.5991 -0.0039 8 6 6.0094 -0.7534 -0.4220 9 6 5.8902 -0.3914 -1.9037 10 6 7.2939 -1.5529 -0.1947 11 6 6.0516 0.5284 0.4146 12 6 4.8924 1.4447 0.0014 13 1 5.0757 1.8432 -0.9964 14 7 4.7714 2.5473 0.9585 15 6 4.2080 3.7110 0.5780 16 8 3.8008 3.8453 -0.5565 17 6 4.0830 4.8450 1.5625 18 16 3.2902 6.2588 0.7570 19 6 3.2729 7.4039 2.0961 20 1 3.6823 7.1203 3.0544 21 6 2.7341 8.6707 1.9191 22 7 2.2356 9.0165 0.7509 23 14 2.7151 9.8844 3.3389 24 1 3.9656 10.6852 3.3224 25 1 1.5459 10.7894 3.2008 26 1 2.6187 9.1434 4.6222 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.9685 2.1234 0.0004 31 1 4.6618 -2.4155 -0.7127 32 1 4.9632 -2.0015 0.9959 33 1 6.7496 0.2094 -2.2013 34 1 5.8601 -1.3037 -2.4994 35 1 4.9754 0.1788 -2.0660 36 1 7.3796 -1.8106 0.8609 37 1 7.2640 -2.4654 -0.7901 38 1 8.1533 -0.9521 -0.4923 39 1 6.9983 1.0416 0.2458 40 1 5.9580 0.2765 1.4709 41 1 5.0968 2.4398 1.8659 42 1 5.0744 5.1341 1.9115 43 1 3.4783 4.5246 2.4109 44 1 1.8587 9.9018 0.6273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044686580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:39 Heat of formation + Delta-G solvation = -64.284917 kcal Electronic energy + Delta-G solvation = -25262.078680 eV Core-core repulsion = 21691.523603 eV Total energy + Delta-G solvation = -3570.555077 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.82444 -40.83116 -39.40648 -35.91361 -34.59602 -34.01377 -32.97105 -31.53329 -29.69991 -29.33474 -28.19531 -27.66284 -25.69315 -24.15906 -22.58824 -21.90568 -20.76621 -19.92442 -19.01705 -17.92928 -17.79154 -17.42017 -16.89744 -16.83550 -16.33686 -15.89633 -15.73446 -15.39366 -15.24269 -14.71866 -14.53402 -14.33025 -14.21542 -14.07828 -13.80616 -13.58680 -13.39347 -13.20547 -13.17557 -12.89975 -12.83039 -12.72283 -12.63634 -12.49635 -12.42451 -11.82086 -11.71741 -11.64657 -11.46835 -11.15267 -10.92000 -10.60666 -10.29003 -10.21475 -9.09039 -8.67765 -8.35682 -6.13833 0.69627 1.24353 1.41554 1.42289 1.51337 1.59443 1.64258 1.88407 2.25981 2.35357 2.98347 3.30663 3.52359 3.64289 3.72407 3.83371 3.94261 4.03509 4.05812 4.27037 4.31934 4.40122 4.41379 4.47731 4.48031 4.59816 4.63352 4.70505 4.81642 4.87077 4.90805 4.94298 4.98632 5.08825 5.10290 5.18116 5.23347 5.32988 5.40474 5.41842 5.49803 5.51543 5.58606 6.18598 6.18778 6.51050 7.05436 7.25764 8.73534 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017735 B = 0.003020 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.380982 B = 9268.736195 C =10247.785216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.030 4.030 3 C -0.212 4.212 4 C -0.201 4.201 5 C -0.008 4.008 6 O -0.176 6.176 7 C -0.023 4.023 8 C -0.048 4.048 9 C -0.152 4.152 10 C -0.134 4.134 11 C -0.111 4.111 12 C 0.217 3.783 13 H 0.072 0.928 14 N -0.706 5.706 15 C 0.536 3.464 16 O -0.560 6.560 17 C -0.129 4.129 18 S -0.147 6.147 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.258 1.258 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.414 0.586 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.204 -26.404 2.192 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 C -0.232 4.232 4 C -0.203 4.203 5 C -0.059 4.059 6 O -0.073 6.073 7 C -0.060 4.060 8 C -0.048 4.048 9 C -0.209 4.209 10 C -0.191 4.191 11 C -0.149 4.149 12 C 0.112 3.888 13 H 0.090 0.910 14 N -0.359 5.359 15 C 0.322 3.678 16 O -0.437 6.437 17 C -0.280 4.280 18 S 0.080 5.920 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.182 1.182 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.251 0.749 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.361 -26.359 0.210 27.368 hybrid contribution -0.030 1.455 1.945 2.429 sum 7.331 -24.904 2.155 26.050 Atomic orbital electron populations 1.20395 0.82934 1.04958 1.04278 1.22937 0.95145 0.83220 1.06663 1.21282 0.93863 0.98871 1.09139 1.20573 0.95511 0.94120 1.10143 1.22849 0.83867 0.94038 1.05172 1.83831 1.16606 1.34971 1.71866 1.20548 0.85037 0.95754 1.04645 1.20512 0.95286 0.94021 0.95013 1.22037 1.01407 1.02083 0.95414 1.21806 0.94321 0.99887 1.03086 1.22022 0.96658 0.94776 1.01426 1.19382 0.91263 0.85079 0.93079 0.91012 1.45785 1.62005 1.12009 1.16092 1.20048 0.76513 0.83457 0.87802 1.90691 1.48648 1.82411 1.21986 1.23372 1.05828 0.97219 1.01619 1.85558 1.78227 1.07882 1.20323 1.23208 1.46609 1.00981 0.98750 0.90023 1.26134 0.93748 0.99575 0.99659 1.70187 1.38232 1.21285 1.25054 0.84948 0.78204 0.77213 0.77581 1.19202 1.20253 1.18237 0.88824 0.89083 0.89368 0.86514 0.88246 0.87321 0.91784 0.91064 0.94798 0.90964 0.91029 0.91544 0.89151 0.89167 0.74858 0.87178 0.87782 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.42 71.23 0.74 -0.66 16 2 C -0.03 -0.85 7.33 24.89 0.18 -0.66 16 3 C -0.21 -7.07 10.20 22.06 0.23 -6.84 16 4 C -0.20 -5.73 4.85 -20.06 -0.10 -5.83 16 5 C -0.01 -0.19 6.77 24.99 0.17 -0.03 16 6 O -0.18 -4.64 10.64 -0.06 0.00 -4.64 16 7 C -0.02 -0.32 5.05 30.03 0.15 -0.17 16 8 C -0.05 -0.61 0.77 -52.03 -0.04 -0.65 16 9 C -0.15 -2.49 7.71 71.98 0.56 -1.94 16 10 C -0.13 -0.98 8.44 71.98 0.61 -0.37 16 11 C -0.11 -1.75 4.36 30.78 0.13 -1.61 16 12 C 0.22 5.62 2.18 44.37 0.10 5.72 16 13 H 0.07 2.28 6.42 -2.39 -0.02 2.27 16 14 N -0.71 -19.69 5.02 -445.51 -2.23 -21.93 16 15 C 0.54 20.79 7.18 87.66 0.63 21.42 16 16 O -0.56 -26.90 14.86 -3.04 -0.05 -26.95 16 17 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 18 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 19 C -0.55 -31.73 9.50 67.96 0.65 -31.08 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.78 5.49 84.86 0.47 1.25 16 22 N -0.91 -56.53 13.22 21.65 0.29 -56.25 16 23 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 27 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.12 4.65 7.21 -2.91 -0.02 4.63 16 31 H 0.10 1.14 8.12 -2.39 -0.02 1.12 16 32 H 0.11 1.09 8.12 -2.39 -0.02 1.07 16 33 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.03 0.77 5.61 -2.38 -0.01 0.76 16 36 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 1.25 8.11 -2.39 -0.02 1.23 16 40 H 0.09 1.14 8.10 -2.39 -0.02 1.12 16 41 H 0.41 8.60 8.60 -92.71 -0.80 7.80 16 42 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 43 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 44 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -80.20 369.42 3.99 -76.21 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.21 Total: 23.36 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 4.91 Total: -26.33 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -1.95 Total: -78.17 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.05 Total: -31.59 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -80.20 3.99 -76.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044686580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.926 kcal (2) G-P(sol) polarization free energy of solvation -80.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds