Wall clock time and date at job start Tue Mar 31 2020 14:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38144 * 120.02731 * 2 1 4 4 C 1.38272 * 120.05223 * 180.30192 * 3 2 1 5 5 C 1.38269 * 120.11017 * 359.67312 * 4 3 2 6 6 C 1.38146 * 120.05574 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.02432 * 179.97438 * 6 5 4 8 8 C 1.38730 * 120.02308 * 179.69964 * 2 1 3 9 9 O 1.35897 * 120.06416 * 359.97438 * 8 2 1 10 10 C 1.42900 * 117.00047 * 269.72897 * 9 8 2 11 11 C 1.53001 * 109.47287 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47009 * 174.99307 * 11 10 9 13 13 C 1.53008 * 109.46508 * 55.00152 * 11 10 9 14 14 N 1.46497 * 109.47201 * 295.00219 * 11 10 9 15 15 C 1.34777 * 119.99525 * 204.99403 * 14 11 10 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 11 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 11 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00336 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99494 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47141 * 90.00156 * 23 21 19 25 25 H 1.48505 * 109.47177 * 209.99950 * 23 21 19 26 26 H 1.48496 * 109.47259 * 329.99923 * 23 21 19 27 27 H 1.08993 * 109.47161 * 270.29766 * 1 2 3 28 28 H 1.08996 * 109.46553 * 30.30131 * 1 2 3 29 29 H 1.09000 * 109.46723 * 150.29483 * 1 2 3 30 30 H 1.07994 * 119.97345 * 359.97327 * 3 2 1 31 31 H 1.07998 * 119.94184 * 179.70269 * 4 3 2 32 32 H 1.08000 * 119.96745 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.47683 * 270.02476 * 7 6 5 34 34 H 1.09003 * 109.47112 * 30.02929 * 7 6 5 35 35 H 1.09003 * 109.47223 * 150.02194 * 7 6 5 36 36 H 1.09008 * 109.47048 * 59.99450 * 10 9 8 37 37 H 1.08995 * 109.47008 * 299.99605 * 10 9 8 38 38 H 1.08995 * 109.47273 * 60.00263 * 13 11 10 39 39 H 1.08998 * 109.46811 * 179.97438 * 13 11 10 40 40 H 1.08994 * 109.47201 * 299.99808 * 13 11 10 41 41 H 0.97000 * 120.00580 * 25.00149 * 14 11 10 42 42 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 43 43 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 44 44 H 0.97003 * 119.99714 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5811 1.1966 -0.0063 5 6 4.2753 0.0008 -0.0058 6 6 3.5886 -1.1978 0.0005 7 6 4.3459 -2.5007 0.0004 8 6 2.2012 -1.2011 0.0063 9 8 1.5235 -2.3791 0.0130 10 6 1.2057 -2.9374 1.2894 11 6 0.4479 -4.2525 1.0965 12 1 0.2834 -4.7227 2.0660 13 6 1.2696 -5.1890 0.2083 14 7 -0.8433 -3.9830 0.4590 15 6 -1.8711 -4.8377 0.6310 16 8 -1.7272 -5.8297 1.3138 17 6 -3.2011 -4.5573 -0.0198 18 16 -4.3692 -5.8737 0.4032 19 6 -5.7953 -5.3073 -0.4627 20 1 -5.7529 -4.3901 -1.0315 21 6 -6.9730 -6.0402 -0.4149 22 7 -8.0383 -5.6173 -1.0622 23 14 -7.0462 -7.6269 0.5683 24 1 -7.4676 -7.3277 1.9604 25 1 -8.0252 -8.5521 -0.0571 26 1 -5.7042 -8.2625 0.5831 27 1 -0.3633 0.0053 1.0276 28 1 -0.3632 0.8873 -0.5185 29 1 -0.3633 -0.8926 -0.5093 30 1 1.6584 2.1313 -0.0004 31 1 4.1197 2.1327 -0.0112 32 1 5.3553 0.0040 -0.0103 33 1 4.5242 -2.8174 -1.0272 34 1 5.3000 -2.3664 0.5100 35 1 3.7612 -3.2609 0.5186 36 1 0.5829 -2.2379 1.8471 37 1 2.1257 -3.1257 1.8428 38 1 2.2303 -5.3895 0.6827 39 1 0.7300 -6.1260 0.0712 40 1 1.4342 -4.7188 -0.7611 41 1 -0.9585 -3.1895 -0.0870 42 1 -3.5859 -3.6018 0.3368 43 1 -3.0751 -4.5173 -1.1017 44 1 -8.8614 -6.1294 -1.0284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048953151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:02 Heat of formation + Delta-G solvation = -87.302312 kcal Electronic energy + Delta-G solvation = -24521.429641 eV Core-core repulsion = 20949.876455 eV Total energy + Delta-G solvation = -3571.553186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35326 -40.64105 -38.52805 -36.27322 -34.67161 -34.50173 -32.91568 -31.86306 -30.07739 -28.43092 -27.85028 -27.51915 -27.18492 -23.07921 -22.58939 -21.80561 -21.51216 -19.92177 -18.75625 -17.94743 -17.64848 -17.26963 -17.08301 -16.49723 -16.28037 -15.88237 -15.72460 -15.21832 -14.97007 -14.82474 -14.68338 -14.44471 -14.14107 -13.96675 -13.88104 -13.81453 -13.54938 -13.35211 -13.26543 -13.00601 -12.87645 -12.75905 -12.59416 -12.44267 -12.27254 -12.17109 -11.89285 -11.82592 -11.16969 -11.01005 -10.78786 -10.53765 -10.17651 -9.51447 -9.43361 -8.99181 -8.51395 -6.22050 0.24672 0.39433 0.98898 1.31514 1.46916 1.55857 1.56692 2.20151 2.25851 2.42008 2.71928 2.86755 2.92426 3.68927 3.83214 3.90923 3.91831 4.00675 4.11359 4.22289 4.29009 4.35469 4.40235 4.46482 4.47821 4.54749 4.64067 4.67813 4.75270 4.77636 4.82866 4.89821 4.94921 4.98161 5.21254 5.31299 5.36521 5.47203 5.54335 5.55145 5.64244 5.70887 5.87366 6.11631 6.45907 6.58451 6.93672 7.18487 8.61062 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.002466 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.825877 B =11353.062385 C =12269.044454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.112 4.112 3 C -0.125 4.125 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.110 4.110 7 C -0.111 4.111 8 C 0.073 3.927 9 O -0.333 6.333 10 C 0.067 3.933 11 C 0.149 3.851 12 H 0.096 0.904 13 C -0.154 4.154 14 N -0.707 5.707 15 C 0.538 3.462 16 O -0.559 6.559 17 C -0.112 4.112 18 S -0.172 6.172 19 C -0.529 4.529 20 H 0.061 0.939 21 C 0.044 3.956 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.236 1.236 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.413 0.587 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.705 14.054 3.669 32.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.112 4.112 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.141 4.141 6 C -0.110 4.110 7 C -0.167 4.167 8 C 0.030 3.970 9 O -0.250 6.250 10 C -0.008 4.008 11 C 0.045 3.955 12 H 0.114 0.886 13 C -0.212 4.212 14 N -0.361 5.361 15 C 0.324 3.676 16 O -0.437 6.437 17 C -0.263 4.263 18 S 0.055 5.945 19 C -0.677 4.677 20 H 0.079 0.921 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.186 1.186 25 H -0.184 1.184 26 H -0.160 1.160 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.250 0.750 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 28.715 12.291 4.593 31.570 hybrid contribution -0.993 1.094 -0.883 1.722 sum 27.722 13.385 3.709 31.007 Atomic orbital electron populations 1.20748 0.90239 1.03460 1.02712 1.20459 0.97315 0.92868 1.00558 1.21227 0.94804 0.97481 1.00795 1.21483 0.94204 0.99063 0.99040 1.21240 1.00943 0.91255 1.00656 1.20475 0.92870 0.97303 1.00389 1.20744 0.99840 0.93269 1.02868 1.18506 0.89903 0.84987 1.03644 1.85993 1.74929 1.35129 1.28949 1.22994 0.99632 0.93400 0.84784 1.21119 0.81820 0.94700 0.97907 0.88627 1.22032 1.00012 0.98377 1.00779 1.45842 1.10555 1.26803 1.52895 1.19906 0.85095 0.82705 0.79937 1.90683 1.83845 1.28750 1.40431 1.23275 0.94805 1.03330 1.04925 1.84659 1.07555 1.33883 1.68438 1.22467 0.97243 1.12384 1.35568 0.92057 1.25582 0.94103 1.00845 0.95566 1.70019 1.02442 1.40744 1.42329 0.85855 0.80863 0.80000 0.79577 1.18614 1.18378 1.16030 0.90851 0.90455 0.91551 0.84249 0.83617 0.83809 0.90983 0.90120 0.91440 0.91718 0.89632 0.89714 0.94306 0.91532 0.74993 0.86919 0.87224 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 9.79 71.24 0.70 -1.05 16 2 C -0.11 -1.88 5.89 -19.77 -0.12 -2.00 16 3 C -0.13 -1.76 9.70 22.26 0.22 -1.54 16 4 C -0.12 -1.46 10.04 22.29 0.22 -1.23 16 5 C -0.12 -1.57 9.70 22.26 0.22 -1.35 16 6 C -0.11 -1.70 5.89 -19.77 -0.12 -1.81 16 7 C -0.11 -1.34 9.79 71.23 0.70 -0.64 16 8 C 0.07 1.30 5.67 22.51 0.13 1.43 16 9 O -0.33 -5.97 7.17 -92.39 -0.66 -6.63 16 10 C 0.07 1.05 5.43 71.98 0.39 1.44 16 11 C 0.15 3.07 2.98 45.00 0.13 3.21 16 12 H 0.10 2.19 7.58 -2.39 -0.02 2.17 16 13 C -0.15 -3.14 9.29 71.98 0.67 -2.47 16 14 N -0.71 -17.34 5.06 -442.52 -2.24 -19.58 16 15 C 0.54 18.48 7.81 87.66 0.68 19.17 16 16 O -0.56 -23.42 15.52 -3.04 -0.05 -23.47 16 17 C -0.11 -4.28 6.16 71.24 0.44 -3.85 16 18 S -0.17 -8.72 18.55 -56.49 -1.05 -9.77 16 19 C -0.53 -31.00 10.04 67.95 0.68 -30.32 16 20 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 21 C 0.04 2.62 5.50 84.86 0.47 3.09 16 22 N -0.92 -56.19 13.97 21.65 0.30 -55.88 16 23 Si 0.92 45.21 27.74 68.60 1.90 47.11 16 24 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 29 H 0.07 1.09 7.53 -2.39 -0.02 1.08 16 30 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 31 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 35 H 0.07 0.83 6.33 -2.39 -0.02 0.82 16 36 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.09 1.08 7.26 -2.39 -0.02 1.06 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.37 7.56 -2.39 -0.02 1.35 16 41 H 0.41 8.48 8.38 -92.71 -0.78 7.70 16 42 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 43 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 44 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -73.06 380.96 3.80 -69.26 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.18 Total: 16.88 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 5.41 Total: -17.93 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -1.94 Total: -75.46 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.71 Total: -30.10 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.77 kcal Total: -73.06 3.80 -69.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048953151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.041 kcal (2) G-P(sol) polarization free energy of solvation -73.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds