Wall clock time and date at job start Tue Mar 31 2020 13:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38404 * 119.82522 * 2 1 4 4 C 1.37894 * 120.16682 * 180.02562 * 3 2 1 5 5 C 1.39838 * 119.82935 * 359.97438 * 4 3 2 6 6 C 1.47196 * 120.17288 * 179.97438 * 5 4 3 7 7 C 1.34825 * 120.00457 * 179.97438 * 6 5 4 8 8 C 1.46386 * 120.00319 * 180.02562 * 7 6 5 9 9 O 1.21702 * 119.99971 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99942 * 180.02562 * 8 7 6 11 11 C 1.39814 * 120.00039 * 175.50912 * 10 8 7 12 12 C 1.38987 * 120.03877 * 215.15827 * 11 10 8 13 13 C 1.38145 * 120.06681 * 179.97438 * 12 11 10 14 14 C 1.38179 * 120.14274 * 359.76696 * 13 12 11 15 15 C 1.38914 * 120.06943 * 0.50465 * 14 13 12 16 16 O 1.35748 * 120.02947 * 179.74502 * 15 14 13 17 17 C 1.34833 * 116.99911 * 354.34978 * 16 15 14 18 18 H 1.07996 * 120.00084 * 5.03000 * 17 16 15 19 19 C 1.38658 * 119.99851 * 185.02039 * 17 16 15 20 20 N 1.31551 * 120.00233 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99966 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46887 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46919 * 120.00568 * 21 19 17 24 24 H 1.48503 * 109.47002 * 240.00708 * 21 19 17 25 25 C 1.38739 * 120.03702 * 35.12600 * 11 10 8 26 26 C 1.39845 * 119.65583 * 0.25639 * 5 4 3 27 27 C 1.37882 * 119.82811 * 359.49072 * 26 5 4 28 28 H 1.08997 * 109.47071 * 90.00482 * 1 2 3 29 29 H 1.08998 * 109.47219 * 210.00306 * 1 2 3 30 30 H 1.08999 * 109.47279 * 329.99955 * 1 2 3 31 31 H 1.08000 * 119.91578 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.08380 * 179.97438 * 4 3 2 33 33 H 1.08006 * 119.99783 * 0.02562 * 6 5 4 34 34 H 1.08006 * 119.99760 * 0.02562 * 7 6 5 35 35 H 0.97004 * 119.99986 * 355.50250 * 10 8 7 36 36 H 1.08001 * 119.97031 * 359.96953 * 12 11 10 37 37 H 1.08000 * 119.93139 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.96261 * 180.25610 * 14 13 12 39 39 H 0.96999 * 120.00373 * 179.97438 * 20 19 17 40 40 H 1.07995 * 120.07755 * 0.05250 * 25 11 10 41 41 H 1.07998 * 120.08251 * 179.72029 * 26 5 4 42 42 H 1.08002 * 119.91554 * 180.23263 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5743 1.2089 -0.0005 5 6 4.2771 0.0000 -0.0005 6 6 5.7491 -0.0001 -0.0017 7 6 6.4232 -1.1676 -0.0011 8 6 7.8871 -1.1677 -0.0017 9 8 8.4956 -0.1137 -0.0022 10 7 8.5610 -2.3349 -0.0017 11 6 9.9558 -2.3368 -0.0970 12 6 10.6040 -3.3479 -0.7964 13 6 11.9822 -3.3501 -0.8915 14 6 12.7203 -2.3451 -0.2960 15 6 12.0788 -1.3348 0.4092 16 8 12.8051 -0.3507 0.9982 17 6 14.1472 -0.4749 0.9615 18 1 14.5997 -1.2853 0.4092 19 6 14.9465 0.4379 1.6326 20 7 14.3955 1.4248 2.3056 21 14 16.8059 0.2663 1.5812 22 1 17.1713 -0.9174 0.7623 23 1 17.3992 1.4869 0.9785 24 1 17.3254 0.0932 2.9616 25 6 10.6945 -1.3289 0.5058 26 6 3.5742 -1.2090 -0.0054 27 6 2.1954 -1.2007 0.0004 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6512 2.1336 -0.0004 32 1 4.1101 2.1467 -0.0010 33 1 6.2891 0.9353 -0.0021 34 1 5.8832 -2.1030 -0.0003 35 1 8.0782 -3.1736 0.0646 36 1 10.0297 -4.1328 -1.2661 37 1 12.4836 -4.1367 -1.4358 38 1 13.7974 -2.3474 -0.3757 39 1 14.9546 2.0632 2.7754 40 1 10.1934 -0.5422 1.0502 41 1 4.1100 -2.1466 -0.0100 42 1 1.6512 -2.1336 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049293575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:00 Heat of formation + Delta-G solvation = 5.171739 kcal Electronic energy + Delta-G solvation = -24475.323214 eV Core-core repulsion = 20772.336053 eV Total energy + Delta-G solvation = -3702.987162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.18799 -39.62089 -38.55081 -36.54422 -34.83371 -34.02904 -32.21441 -31.72568 -31.19902 -29.50011 -28.57593 -27.08146 -25.27847 -23.80819 -23.13781 -22.08280 -21.39843 -20.66139 -19.41685 -18.16430 -17.65314 -17.07543 -16.25690 -15.70664 -15.52007 -15.14636 -15.03178 -14.89999 -14.30894 -14.19877 -14.16762 -13.83887 -13.67704 -13.53295 -13.45735 -12.82804 -12.66512 -12.62578 -12.47686 -12.20527 -11.71193 -11.58551 -11.49055 -11.23196 -11.15343 -10.99925 -10.75440 -10.41852 -10.36900 -9.78160 -9.69837 -9.30415 -9.14062 -8.79159 -8.41504 -7.65371 -7.14683 -6.39025 -3.98067 0.29187 1.07852 1.72363 2.21628 2.38528 3.15625 3.16759 3.22902 3.28470 3.34916 3.63146 4.01142 4.39072 4.39975 4.54272 4.61448 4.64161 4.82763 4.97003 5.05044 5.07153 5.17444 5.18557 5.30829 5.38530 5.42244 5.64708 5.65849 5.71853 5.85758 5.87083 5.94437 6.12953 6.17479 6.22339 6.27358 6.39694 6.43153 6.62347 6.74053 6.93625 7.07424 7.12400 7.38207 7.51553 7.74814 7.83401 8.06075 8.40190 9.05950 9.77928 10.79028 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.002013 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.862759 B =13908.867624 C =14986.712547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.124 4.124 4 C -0.091 4.091 5 C -0.077 4.077 6 C -0.024 4.024 7 C -0.204 4.204 8 C 0.537 3.463 9 O -0.514 6.514 10 N -0.664 5.664 11 C 0.174 3.826 12 C -0.235 4.235 13 C -0.059 4.059 14 C -0.245 4.245 15 C 0.166 3.834 16 O -0.174 6.174 17 C -0.391 4.391 18 H 0.093 0.907 19 C 0.038 3.962 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.186 4.186 26 C -0.098 4.098 27 C -0.124 4.124 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.406 0.594 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.269 0.731 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.693 -6.994 -5.015 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.109 4.109 5 C -0.077 4.077 6 C -0.044 4.044 7 C -0.225 4.225 8 C 0.327 3.673 9 O -0.390 6.390 10 N -0.308 5.308 11 C 0.080 3.920 12 C -0.256 4.256 13 C -0.078 4.078 14 C -0.265 4.265 15 C 0.111 3.889 16 O -0.077 6.077 17 C -0.467 4.467 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.495 5.495 21 Si 0.767 3.233 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.207 4.207 26 C -0.116 4.116 27 C -0.142 4.142 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.241 0.759 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.281 -5.810 -4.760 25.416 hybrid contribution 0.736 -0.645 -0.060 0.981 sum -23.545 -6.456 -4.820 24.885 Atomic orbital electron populations 1.20834 0.91112 1.02939 1.02459 1.20099 0.96220 0.93222 0.98417 1.21001 0.94060 0.97692 1.01424 1.21419 0.94185 0.97526 0.97733 1.19049 0.92554 0.93606 1.02491 1.22400 0.91659 0.99184 0.91109 1.22874 0.92989 0.99375 1.07265 1.18406 0.87989 0.83868 0.77037 1.90903 1.69751 1.30899 1.47446 1.43230 1.05711 1.09016 1.72855 1.17180 0.80959 0.96663 0.97160 1.20277 0.94723 1.02243 1.08404 1.20498 0.92915 0.97040 0.97357 1.21184 1.00763 0.98169 1.06401 1.19149 0.90923 0.87740 0.91044 1.83996 1.19538 1.38284 1.65891 1.21400 0.78037 1.14205 1.33096 0.88936 1.25309 1.00456 0.95217 0.95645 1.70063 1.35977 1.13566 1.29942 0.85637 0.80721 0.78604 0.78375 1.19088 1.20183 1.20181 1.20196 0.91193 1.02426 1.06900 1.21426 0.94195 0.97570 0.98413 1.20975 0.94021 0.97658 1.01520 0.90995 0.91424 0.91406 0.85719 0.85244 0.84361 0.85314 0.75904 0.87389 0.87056 0.85458 0.92097 0.84805 0.85400 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 10.00 36.01 0.36 -0.21 16 2 C -0.08 -0.59 5.89 -104.50 -0.62 -1.20 16 3 C -0.12 -0.97 9.68 -39.65 -0.38 -1.35 16 4 C -0.09 -0.81 9.80 -39.11 -0.38 -1.19 16 5 C -0.08 -0.75 5.87 -105.06 -0.62 -1.37 16 6 C -0.02 -0.27 9.46 -37.16 -0.35 -0.62 16 7 C -0.20 -2.34 9.41 -37.52 -0.35 -2.69 16 8 C 0.54 8.62 7.58 -12.98 -0.10 8.52 16 9 O -0.51 -10.77 13.67 5.19 0.07 -10.70 16 10 N -0.66 -9.96 5.33 -11.15 -0.06 -10.02 16 11 C 0.17 3.34 6.29 -83.75 -0.53 2.82 16 12 C -0.24 -4.12 9.96 -39.34 -0.39 -4.52 16 13 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 14 C -0.25 -5.52 9.17 -39.35 -0.36 -5.88 16 15 C 0.17 4.28 6.64 -39.13 -0.26 4.02 16 16 O -0.17 -5.24 9.76 0.04 0.00 -5.24 16 17 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 18 H 0.09 2.46 5.20 -52.49 -0.27 2.18 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -26.07 13.67 55.48 0.76 -25.31 16 21 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 25 C -0.19 -4.40 8.63 -39.20 -0.34 -4.74 16 26 C -0.10 -0.83 9.41 -39.11 -0.37 -1.19 16 27 C -0.12 -0.93 9.68 -39.65 -0.38 -1.31 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 1.71 7.52 -52.48 -0.39 1.32 16 34 H 0.13 1.02 6.07 -52.48 -0.32 0.70 16 35 H 0.41 4.25 8.80 -40.82 -0.36 3.89 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 38 H 0.13 2.83 5.63 -52.49 -0.30 2.54 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.13 3.40 6.23 -52.49 -0.33 3.08 16 41 H 0.13 0.84 6.17 -52.49 -0.32 0.52 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -35.50 364.30 -8.84 -44.34 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.80 Total: 7.91 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -5.27 Total: -22.45 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.70 Total: -35.33 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.07 Total: -15.94 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.50 -8.84 -44.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049293575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.512 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds