Wall clock time and date at job start Tue Mar 31 2020 13:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38404 * 119.82522 * 2 1 4 4 C 1.37894 * 120.16682 * 180.02562 * 3 2 1 5 5 C 1.39838 * 119.82935 * 359.97438 * 4 3 2 6 6 C 1.47196 * 120.17288 * 179.97438 * 5 4 3 7 7 C 1.34825 * 120.00457 * 179.97438 * 6 5 4 8 8 C 1.46386 * 120.00319 * 180.02562 * 7 6 5 9 9 O 1.21702 * 119.99971 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99942 * 180.02562 * 8 7 6 11 11 C 1.39814 * 120.00039 * 175.50912 * 10 8 7 12 12 C 1.38987 * 120.03877 * 215.15827 * 11 10 8 13 13 C 1.38145 * 120.06681 * 179.97438 * 12 11 10 14 14 C 1.38179 * 120.14274 * 359.76696 * 13 12 11 15 15 C 1.38914 * 120.06943 * 0.50465 * 14 13 12 16 16 O 1.35748 * 120.02947 * 179.74502 * 15 14 13 17 17 C 1.34833 * 116.99911 * 354.34978 * 16 15 14 18 18 H 1.07996 * 120.00084 * 5.03000 * 17 16 15 19 19 C 1.38658 * 119.99851 * 185.02039 * 17 16 15 20 20 N 1.31551 * 120.00233 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99966 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46887 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46919 * 120.00568 * 21 19 17 24 24 H 1.48503 * 109.47002 * 240.00708 * 21 19 17 25 25 C 1.38739 * 120.03702 * 35.12600 * 11 10 8 26 26 C 1.39845 * 119.65583 * 0.25639 * 5 4 3 27 27 C 1.37882 * 119.82811 * 359.49072 * 26 5 4 28 28 H 1.08997 * 109.47071 * 90.00482 * 1 2 3 29 29 H 1.08998 * 109.47219 * 210.00306 * 1 2 3 30 30 H 1.08999 * 109.47279 * 329.99955 * 1 2 3 31 31 H 1.08000 * 119.91578 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.08380 * 179.97438 * 4 3 2 33 33 H 1.08006 * 119.99783 * 0.02562 * 6 5 4 34 34 H 1.08006 * 119.99760 * 0.02562 * 7 6 5 35 35 H 0.97004 * 119.99986 * 355.50250 * 10 8 7 36 36 H 1.08001 * 119.97031 * 359.96953 * 12 11 10 37 37 H 1.08000 * 119.93139 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.96261 * 180.25610 * 14 13 12 39 39 H 0.96999 * 120.00373 * 179.97438 * 20 19 17 40 40 H 1.07995 * 120.07755 * 0.05250 * 25 11 10 41 41 H 1.07998 * 120.08251 * 179.72029 * 26 5 4 42 42 H 1.08002 * 119.91554 * 180.23263 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5743 1.2089 -0.0005 5 6 4.2771 0.0000 -0.0005 6 6 5.7491 -0.0001 -0.0017 7 6 6.4232 -1.1676 -0.0011 8 6 7.8871 -1.1677 -0.0017 9 8 8.4956 -0.1137 -0.0022 10 7 8.5610 -2.3349 -0.0017 11 6 9.9558 -2.3368 -0.0970 12 6 10.6040 -3.3479 -0.7964 13 6 11.9822 -3.3501 -0.8915 14 6 12.7203 -2.3451 -0.2960 15 6 12.0788 -1.3348 0.4092 16 8 12.8051 -0.3507 0.9982 17 6 14.1472 -0.4749 0.9615 18 1 14.5997 -1.2853 0.4092 19 6 14.9465 0.4379 1.6326 20 7 14.3955 1.4248 2.3056 21 14 16.8059 0.2663 1.5812 22 1 17.1713 -0.9174 0.7623 23 1 17.3992 1.4869 0.9785 24 1 17.3254 0.0932 2.9616 25 6 10.6945 -1.3289 0.5058 26 6 3.5742 -1.2090 -0.0054 27 6 2.1954 -1.2007 0.0004 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6512 2.1336 -0.0004 32 1 4.1101 2.1467 -0.0010 33 1 6.2891 0.9353 -0.0021 34 1 5.8832 -2.1030 -0.0003 35 1 8.0782 -3.1736 0.0646 36 1 10.0297 -4.1328 -1.2661 37 1 12.4836 -4.1367 -1.4358 38 1 13.7974 -2.3474 -0.3757 39 1 14.9546 2.0632 2.7754 40 1 10.1934 -0.5422 1.0502 41 1 4.1100 -2.1466 -0.0100 42 1 1.6512 -2.1336 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049293575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:59 Heat of formation + Delta-G solvation = -17.299119 kcal Electronic energy + Delta-G solvation = -24476.297624 eV Core-core repulsion = 20772.336053 eV Total energy + Delta-G solvation = -3703.961571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59096 -40.47259 -40.13818 -38.25459 -35.66066 -35.52692 -34.26951 -32.47411 -31.84753 -31.14517 -30.12571 -27.87612 -27.30354 -24.90882 -23.84051 -23.44551 -22.85797 -21.82146 -20.50093 -19.93382 -19.10961 -18.50113 -17.37913 -16.89361 -16.76577 -16.44630 -16.34953 -16.00720 -15.85233 -15.68144 -15.48379 -15.11781 -14.65132 -14.52319 -14.38906 -14.26612 -14.09917 -13.60296 -13.27976 -13.25957 -13.17807 -12.96226 -12.84653 -12.70171 -12.37159 -12.18280 -12.09142 -11.80378 -11.47331 -11.30316 -11.17360 -10.83933 -10.76787 -9.90840 -9.38521 -9.12538 -8.85389 -8.47344 -6.17114 -0.53299 0.43747 0.47697 0.69584 1.01225 1.34031 1.43852 1.54142 2.03666 2.18614 2.20814 2.82876 2.91196 3.14863 3.42460 3.65395 3.77284 3.98251 4.04124 4.11930 4.14794 4.23407 4.35831 4.40883 4.41916 4.48712 4.70095 4.73722 4.78956 4.85262 4.90374 4.98820 5.05787 5.10999 5.16506 5.18522 5.28886 5.42230 5.45651 5.50290 5.62857 5.64631 5.66606 5.73402 6.02667 6.03860 6.19949 6.48539 6.96210 7.17016 7.79277 8.76903 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.002013 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.862759 B =13908.867624 C =14986.712547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.079 4.079 3 C -0.134 4.134 4 C -0.104 4.104 5 C -0.101 4.101 6 C -0.015 4.015 7 C -0.207 4.207 8 C 0.532 3.468 9 O -0.575 6.575 10 N -0.647 5.647 11 C 0.181 3.819 12 C -0.203 4.203 13 C -0.049 4.049 14 C -0.255 4.255 15 C 0.125 3.875 16 O -0.237 6.237 17 C -0.414 4.414 18 H 0.107 0.893 19 C -0.029 4.029 20 N -0.925 5.925 21 Si 1.026 2.974 22 H -0.246 1.246 23 H -0.270 1.270 24 H -0.268 1.268 25 C -0.215 4.215 26 C -0.098 4.098 27 C -0.130 4.130 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.175 0.825 35 H 0.433 0.567 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.124 0.876 39 H 0.272 0.728 40 H 0.099 0.901 41 H 0.149 0.851 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.915 -11.171 -6.901 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C -0.152 4.152 4 C -0.122 4.122 5 C -0.101 4.101 6 C -0.035 4.035 7 C -0.227 4.227 8 C 0.325 3.675 9 O -0.456 6.456 10 N -0.294 5.294 11 C 0.086 3.914 12 C -0.223 4.223 13 C -0.067 4.067 14 C -0.275 4.275 15 C 0.074 3.926 16 O -0.143 6.143 17 C -0.490 4.490 18 H 0.125 0.875 19 C -0.226 4.226 20 N -0.564 5.564 21 Si 0.844 3.156 22 H -0.169 1.169 23 H -0.195 1.195 24 H -0.193 1.193 25 C -0.237 4.237 26 C -0.115 4.115 27 C -0.148 4.148 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.132 0.868 34 H 0.192 0.808 35 H 0.273 0.727 36 H 0.184 0.816 37 H 0.179 0.821 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.167 0.833 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -26.580 -10.078 -6.674 29.200 hybrid contribution 1.004 0.517 0.398 1.197 sum -25.577 -9.561 -6.275 28.017 Atomic orbital electron populations 1.20898 0.89226 1.03894 1.03297 1.20508 0.97726 0.93031 0.96677 1.21256 0.93621 0.98946 1.01376 1.21601 0.95073 0.97575 0.97956 1.19026 0.91349 0.94822 1.04879 1.22430 0.92918 0.98430 0.89693 1.22810 0.89866 1.01228 1.08784 1.19228 0.89848 0.83067 0.75407 1.90900 1.71318 1.33160 1.50214 1.43126 1.03993 1.10233 1.72013 1.17359 0.82858 0.95445 0.95748 1.20921 0.94713 1.01617 1.05040 1.21056 0.93464 0.96399 0.95787 1.21339 1.01014 0.98509 1.06602 1.19694 0.91688 0.88753 0.92489 1.83963 1.20354 1.41183 1.68828 1.21974 0.78285 1.15011 1.33694 0.87533 1.26751 1.06538 0.94447 0.94835 1.70233 1.38397 1.15386 1.32339 0.84441 0.72800 0.79357 0.78977 1.16922 1.19468 1.19257 1.20221 0.91012 1.03652 1.08786 1.21693 0.94831 0.97595 0.97395 1.21326 0.93837 0.98767 1.00870 0.90066 0.90263 0.90753 0.84124 0.85276 0.86810 0.80825 0.72686 0.81631 0.82087 0.85836 0.91890 0.88282 0.83323 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.00 71.24 0.71 -0.09 16 2 C -0.08 -0.98 5.89 -19.78 -0.12 -1.10 16 3 C -0.13 -1.92 9.68 22.23 0.22 -1.70 16 4 C -0.10 -1.85 9.80 22.58 0.22 -1.62 16 5 C -0.10 -1.90 5.87 -20.15 -0.12 -2.01 16 6 C -0.01 -0.34 9.46 23.84 0.23 -0.12 16 7 C -0.21 -4.49 9.41 23.61 0.22 -4.27 16 8 C 0.53 17.20 7.58 86.36 0.65 17.85 16 9 O -0.58 -25.95 13.67 -4.35 -0.06 -26.01 16 10 N -0.65 -18.17 5.33 -307.41 -1.64 -19.81 16 11 C 0.18 6.73 6.29 38.17 0.24 6.98 16 12 C -0.20 -6.16 9.96 22.43 0.22 -5.93 16 13 C -0.05 -1.63 10.03 22.23 0.22 -1.41 16 14 C -0.25 -11.49 9.17 22.42 0.21 -11.29 16 15 C 0.12 6.83 6.64 22.56 0.15 6.98 16 16 O -0.24 -15.52 9.76 -22.75 -0.22 -15.74 16 17 C -0.41 -25.40 9.49 67.92 0.64 -24.76 16 18 H 0.11 5.90 5.20 -2.91 -0.02 5.89 16 19 C -0.03 -1.73 5.49 84.84 0.47 -1.27 16 20 N -0.93 -60.13 13.67 21.61 0.30 -59.83 16 21 Si 1.03 44.57 29.55 68.60 2.03 46.60 16 22 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 C -0.22 -10.81 8.63 22.52 0.19 -10.61 16 26 C -0.10 -1.38 9.41 22.57 0.21 -1.17 16 27 C -0.13 -1.55 9.68 22.23 0.22 -1.34 16 28 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 0.38 8.08 -2.39 -0.02 0.36 16 30 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16 31 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 32 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 33 H 0.11 3.14 7.52 -2.91 -0.02 3.12 16 34 H 0.17 2.08 6.07 -2.91 -0.02 2.06 16 35 H 0.43 7.26 8.80 -92.71 -0.82 6.44 16 36 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.16 3.88 8.06 -2.91 -0.02 3.85 16 38 H 0.12 5.56 5.63 -2.91 -0.02 5.54 16 39 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 40 H 0.10 5.60 6.23 -2.91 -0.02 5.58 16 41 H 0.15 1.36 6.17 -2.91 -0.02 1.34 16 42 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -88.93 364.30 5.45 -83.48 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.25 Total: 28.17 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 4.79 Total: -36.86 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -1.34 Total: -79.64 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.28 Total: -41.75 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -88.93 5.45 -83.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049293575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.185 kcal (2) G-P(sol) polarization free energy of solvation -88.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds