Wall clock time and date at job start Tue Mar 31 2020 13:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38421 * 119.91409 * 2 1 4 4 C 1.38387 * 120.34765 * 180.02562 * 3 2 1 5 5 C 1.37914 * 120.16730 * 359.97438 * 4 3 2 6 6 C 1.39813 * 119.82633 * 359.97438 * 5 4 3 7 7 C 1.47205 * 120.17086 * 179.97438 * 6 5 4 8 8 C 1.34835 * 119.99800 * 359.97438 * 7 6 5 9 9 C 1.46377 * 120.00035 * 180.02562 * 8 7 6 10 10 O 1.21711 * 120.00043 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00101 * 180.02562 * 9 8 7 12 12 C 1.39814 * 120.00132 * 175.50431 * 11 9 8 13 13 C 1.38990 * 120.04083 * 215.16081 * 12 11 9 14 14 C 1.38152 * 120.06341 * 179.97438 * 13 12 11 15 15 C 1.38173 * 120.14241 * 359.74728 * 14 13 12 16 16 C 1.38910 * 120.07419 * 0.50888 * 15 14 13 17 17 O 1.35748 * 120.03063 * 179.76793 * 16 15 14 18 18 C 1.34833 * 116.99911 * 354.34338 * 17 16 15 19 19 H 1.07996 * 120.00084 * 5.03000 * 18 17 16 20 20 C 1.38660 * 120.00062 * 185.02661 * 18 17 16 21 21 N 1.31555 * 120.00096 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99793 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47024 * 90.00204 * 22 20 18 24 24 H 1.48501 * 109.47195 * 210.00253 * 22 20 18 25 25 H 1.48503 * 109.47158 * 330.00315 * 22 20 18 26 26 C 1.38742 * 120.03539 * 35.13892 * 12 11 9 27 27 C 1.37868 * 119.91488 * 180.23130 * 2 1 3 28 28 H 1.09002 * 109.47007 * 90.00011 * 1 2 3 29 29 H 1.08998 * 109.47169 * 210.00483 * 1 2 3 30 30 H 1.09004 * 109.47201 * 330.00354 * 1 2 3 31 31 H 1.08002 * 119.82823 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.91362 * 179.97438 * 4 3 2 33 33 H 1.07995 * 120.08214 * 180.02562 * 5 4 3 34 34 H 1.07993 * 120.00156 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.99767 * 0.02562 * 8 7 6 36 36 H 0.97002 * 119.99961 * 355.51004 * 11 9 8 37 37 H 1.07997 * 119.96786 * 0.02562 * 13 12 11 38 38 H 1.08005 * 119.92698 * 180.02562 * 14 13 12 39 39 H 1.07996 * 119.96198 * 180.27175 * 15 14 13 40 40 H 0.96999 * 119.99745 * 180.02562 * 21 20 18 41 41 H 1.07994 * 120.07598 * 0.04323 * 26 12 11 42 42 H 1.08002 * 120.08944 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1998 0.0000 4 6 3.5811 1.2103 -0.0005 5 6 4.2832 0.0232 -0.0005 6 6 3.5932 -1.1928 0.0005 7 6 4.3349 -2.4643 0.0000 8 6 5.6832 -2.4582 -0.0021 9 6 6.4208 -3.7226 -0.0032 10 8 5.8171 -4.7794 -0.0028 11 7 7.7686 -3.7165 -0.0048 12 6 8.4732 -4.9205 0.0890 13 6 9.6740 -4.9713 0.7871 14 6 10.3704 -6.1608 0.8805 15 6 9.8733 -7.3044 0.2853 16 6 8.6765 -7.2591 -0.4183 17 8 8.1913 -8.3821 -1.0067 18 6 8.9746 -9.4789 -0.9713 19 1 9.9034 -9.4617 -0.4204 20 6 8.5878 -10.6292 -1.6421 21 7 9.3518 -11.6995 -1.6071 22 14 6.9810 -10.6592 -2.5942 23 1 7.2262 -10.2244 -3.9929 24 1 6.4311 -12.0387 -2.5939 25 1 6.0082 -9.7385 -1.9529 26 6 7.9743 -6.0660 -0.5142 27 6 2.1946 -1.1950 -0.0048 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6531 2.1327 -0.0004 32 1 4.1126 2.1504 -0.0009 33 1 5.3631 0.0330 -0.0005 34 1 3.7992 -3.4020 0.0004 35 1 6.2190 -1.5205 -0.0029 36 1 8.2497 -2.8769 -0.0709 37 1 10.0627 -4.0803 1.2575 38 1 11.3031 -6.1979 1.4238 39 1 10.4179 -8.2337 0.3639 40 1 9.0813 -12.5040 -2.0767 41 1 7.0417 -6.0292 -1.0574 42 1 1.6546 -2.1303 -0.0082 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049294743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:03 Heat of formation + Delta-G solvation = 6.830762 kcal Electronic energy + Delta-G solvation = -24597.905078 eV Core-core repulsion = 20894.989857 eV Total energy + Delta-G solvation = -3702.915221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.29567 -39.68776 -38.72819 -36.71346 -34.75017 -34.13571 -32.60645 -32.33880 -30.58136 -29.55110 -28.54084 -27.23467 -25.26315 -24.62184 -22.56136 -22.37845 -21.39771 -20.59793 -19.26007 -18.02661 -17.84111 -17.36623 -16.67824 -15.80979 -15.45028 -15.22253 -15.16425 -15.00505 -14.47323 -14.20939 -14.02591 -13.81063 -13.71595 -13.60926 -13.53638 -12.84849 -12.66976 -12.65391 -12.38045 -12.29482 -12.25643 -11.63887 -11.57040 -11.30994 -11.18944 -10.96883 -10.81744 -10.55253 -10.21118 -9.86819 -9.71117 -9.24824 -9.14917 -8.82983 -8.58094 -7.78331 -7.28802 -6.37746 -4.04030 0.23540 0.99816 1.66216 2.11856 2.25943 3.17971 3.23557 3.29459 3.30762 3.48842 3.55838 4.28730 4.30089 4.36102 4.46467 4.51958 4.65123 4.81764 4.89123 4.92363 4.99804 5.05406 5.14970 5.19987 5.25665 5.40746 5.55947 5.58420 5.69230 5.74194 5.79825 5.92884 6.07765 6.08988 6.15002 6.19516 6.30232 6.32517 6.53631 6.57672 6.83541 6.95755 7.13782 7.34973 7.60840 7.63464 7.84382 8.06681 8.29287 8.97901 9.61427 10.69646 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.002300 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.001644 B =12170.338459 C =13700.608241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 C -0.113 4.113 4 C -0.118 4.118 5 C -0.108 4.108 6 C -0.068 4.068 7 C -0.024 4.024 8 C -0.203 4.203 9 C 0.539 3.461 10 O -0.516 6.516 11 N -0.664 5.664 12 C 0.172 3.828 13 C -0.227 4.227 14 C -0.060 4.060 15 C -0.232 4.232 16 C 0.172 3.828 17 O -0.214 6.214 18 C -0.388 4.388 19 H 0.107 0.893 20 C 0.064 3.936 21 N -0.879 5.879 22 Si 0.903 3.097 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.257 1.257 26 C -0.186 4.186 27 C -0.096 4.096 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.407 0.593 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.134 0.866 40 H 0.279 0.721 41 H 0.134 0.866 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.337 27.326 3.604 29.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.090 4.090 3 C -0.131 4.131 4 C -0.136 4.136 5 C -0.126 4.126 6 C -0.068 4.068 7 C -0.044 4.044 8 C -0.224 4.224 9 C 0.328 3.672 10 O -0.393 6.393 11 N -0.308 5.308 12 C 0.079 3.921 13 C -0.248 4.248 14 C -0.079 4.079 15 C -0.252 4.252 16 C 0.119 3.881 17 O -0.118 6.118 18 C -0.464 4.464 19 H 0.125 0.875 20 C -0.140 4.140 21 N -0.517 5.517 22 Si 0.728 3.272 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.181 1.181 26 C -0.208 4.208 27 C -0.114 4.114 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.242 0.758 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.152 0.848 40 H 0.089 0.911 41 H 0.152 0.848 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.991 26.302 3.425 29.109 hybrid contribution -0.079 0.284 -0.368 0.471 sum -12.070 26.586 3.058 29.357 Atomic orbital electron populations 1.20817 0.90891 1.02995 1.02555 1.19887 0.96326 0.92988 0.99750 1.21193 0.94337 0.97565 0.99996 1.21088 0.94235 0.98070 1.00235 1.21425 1.00109 0.91740 0.99342 1.19038 0.93340 0.92722 1.01661 1.22402 0.93989 0.96842 0.91124 1.22882 0.95268 0.97120 1.07124 1.18405 0.82029 0.89807 0.76926 1.90890 1.68202 1.32534 1.47653 1.43230 1.06174 1.08571 1.72784 1.17157 0.92500 0.85173 0.97275 1.20355 0.98022 0.98754 1.07646 1.20560 0.98205 0.91807 0.97349 1.21303 0.98931 0.99811 1.05110 1.18880 0.91312 0.86556 0.91336 1.83589 1.43519 1.16892 1.67818 1.20785 1.04588 0.87531 1.33466 0.87528 1.24456 0.98940 0.93902 0.96655 1.69646 1.37475 1.02514 1.42106 0.86209 0.83051 0.77586 0.80320 1.19885 1.20775 1.18136 1.20188 1.03331 0.90216 1.07023 1.21302 0.92992 0.98110 0.99025 0.90991 0.91294 0.91447 0.85956 0.85681 0.85442 0.84392 0.85205 0.75776 0.87154 0.86725 0.84819 0.91085 0.84820 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.09 -0.67 5.87 -104.69 -0.61 -1.29 16 3 C -0.11 -0.78 9.69 -39.46 -0.38 -1.16 16 4 C -0.12 -0.82 10.03 -39.65 -0.40 -1.22 16 5 C -0.11 -0.85 9.41 -39.11 -0.37 -1.22 16 6 C -0.07 -0.63 5.87 -105.06 -0.62 -1.24 16 7 C -0.02 -0.25 9.46 -37.15 -0.35 -0.61 16 8 C -0.20 -2.16 9.41 -37.52 -0.35 -2.51 16 9 C 0.54 8.08 7.58 -12.99 -0.10 7.98 16 10 O -0.52 -10.17 13.67 5.18 0.07 -10.10 16 11 N -0.66 -9.27 5.33 -11.15 -0.06 -9.33 16 12 C 0.17 3.13 6.29 -83.75 -0.53 2.60 16 13 C -0.23 -3.78 9.97 -39.33 -0.39 -4.18 16 14 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 15 C -0.23 -5.12 9.17 -39.36 -0.36 -5.49 16 16 C 0.17 4.22 6.64 -39.14 -0.26 3.96 16 17 O -0.21 -5.94 8.58 0.04 0.00 -5.94 16 18 C -0.39 -11.25 9.95 30.89 0.31 -10.94 16 19 H 0.11 3.12 5.43 -52.49 -0.29 2.83 16 20 C 0.06 1.83 5.49 -17.51 -0.10 1.74 16 21 N -0.88 -25.84 13.96 55.48 0.77 -25.07 16 22 Si 0.90 22.52 28.62 -169.99 -4.86 17.66 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.26 -6.58 7.11 56.52 0.40 -6.18 16 26 C -0.19 -4.14 8.63 -39.20 -0.34 -4.48 16 27 C -0.10 -0.83 9.44 -39.11 -0.37 -1.20 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.13 0.77 6.17 -52.49 -0.32 0.45 16 34 H 0.14 1.60 7.52 -52.49 -0.39 1.20 16 35 H 0.13 0.93 6.07 -52.49 -0.32 0.61 16 36 H 0.41 3.89 8.80 -40.82 -0.36 3.53 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 39 H 0.13 3.06 5.63 -52.49 -0.30 2.77 16 40 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.13 3.13 6.23 -52.49 -0.33 2.80 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -34.06 363.19 -8.68 -42.74 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.82 Total: 5.55 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -5.26 Total: -20.98 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.72 Total: -34.40 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.07 Total: -16.04 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.86 Total: 17.66 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.06 -8.68 -42.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.568 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds