Wall clock time and date at job start Tue Mar 31 2020 13:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38421 * 119.91409 * 2 1 4 4 C 1.38387 * 120.34765 * 180.02562 * 3 2 1 5 5 C 1.37914 * 120.16730 * 359.97438 * 4 3 2 6 6 C 1.39813 * 119.82633 * 359.97438 * 5 4 3 7 7 C 1.47205 * 120.17086 * 179.97438 * 6 5 4 8 8 C 1.34835 * 119.99800 * 359.97438 * 7 6 5 9 9 C 1.46377 * 120.00035 * 180.02562 * 8 7 6 10 10 O 1.21711 * 120.00043 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00101 * 180.02562 * 9 8 7 12 12 C 1.39814 * 120.00132 * 175.50431 * 11 9 8 13 13 C 1.38990 * 120.04083 * 215.16081 * 12 11 9 14 14 C 1.38152 * 120.06341 * 179.97438 * 13 12 11 15 15 C 1.38173 * 120.14241 * 359.74728 * 14 13 12 16 16 C 1.38910 * 120.07419 * 0.50888 * 15 14 13 17 17 O 1.35748 * 120.03063 * 179.76793 * 16 15 14 18 18 C 1.34833 * 116.99911 * 354.34338 * 17 16 15 19 19 H 1.07996 * 120.00084 * 5.03000 * 18 17 16 20 20 C 1.38660 * 120.00062 * 185.02661 * 18 17 16 21 21 N 1.31555 * 120.00096 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99793 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47024 * 90.00204 * 22 20 18 24 24 H 1.48501 * 109.47195 * 210.00253 * 22 20 18 25 25 H 1.48503 * 109.47158 * 330.00315 * 22 20 18 26 26 C 1.38742 * 120.03539 * 35.13892 * 12 11 9 27 27 C 1.37868 * 119.91488 * 180.23130 * 2 1 3 28 28 H 1.09002 * 109.47007 * 90.00011 * 1 2 3 29 29 H 1.08998 * 109.47169 * 210.00483 * 1 2 3 30 30 H 1.09004 * 109.47201 * 330.00354 * 1 2 3 31 31 H 1.08002 * 119.82823 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.91362 * 179.97438 * 4 3 2 33 33 H 1.07995 * 120.08214 * 180.02562 * 5 4 3 34 34 H 1.07993 * 120.00156 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.99767 * 0.02562 * 8 7 6 36 36 H 0.97002 * 119.99961 * 355.51004 * 11 9 8 37 37 H 1.07997 * 119.96786 * 0.02562 * 13 12 11 38 38 H 1.08005 * 119.92698 * 180.02562 * 14 13 12 39 39 H 1.07996 * 119.96198 * 180.27175 * 15 14 13 40 40 H 0.96999 * 119.99745 * 180.02562 * 21 20 18 41 41 H 1.07994 * 120.07598 * 0.04323 * 26 12 11 42 42 H 1.08002 * 120.08944 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1998 0.0000 4 6 3.5811 1.2103 -0.0005 5 6 4.2832 0.0232 -0.0005 6 6 3.5932 -1.1928 0.0005 7 6 4.3349 -2.4643 0.0000 8 6 5.6832 -2.4582 -0.0021 9 6 6.4208 -3.7226 -0.0032 10 8 5.8171 -4.7794 -0.0028 11 7 7.7686 -3.7165 -0.0048 12 6 8.4732 -4.9205 0.0890 13 6 9.6740 -4.9713 0.7871 14 6 10.3704 -6.1608 0.8805 15 6 9.8733 -7.3044 0.2853 16 6 8.6765 -7.2591 -0.4183 17 8 8.1913 -8.3821 -1.0067 18 6 8.9746 -9.4789 -0.9713 19 1 9.9034 -9.4617 -0.4204 20 6 8.5878 -10.6292 -1.6421 21 7 9.3518 -11.6995 -1.6071 22 14 6.9810 -10.6592 -2.5942 23 1 7.2262 -10.2244 -3.9929 24 1 6.4311 -12.0387 -2.5939 25 1 6.0082 -9.7385 -1.9529 26 6 7.9743 -6.0660 -0.5142 27 6 2.1946 -1.1950 -0.0048 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6531 2.1327 -0.0004 32 1 4.1126 2.1504 -0.0009 33 1 5.3631 0.0330 -0.0005 34 1 3.7992 -3.4020 0.0004 35 1 6.2190 -1.5205 -0.0029 36 1 8.2497 -2.8769 -0.0709 37 1 10.0627 -4.0803 1.2575 38 1 11.3031 -6.1979 1.4238 39 1 10.4179 -8.2337 0.3639 40 1 9.0813 -12.5040 -2.0767 41 1 7.0417 -6.0292 -1.0574 42 1 1.6546 -2.1303 -0.0082 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049294743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:02 Heat of formation + Delta-G solvation = -13.635011 kcal Electronic energy + Delta-G solvation = -24598.792540 eV Core-core repulsion = 20894.989857 eV Total energy + Delta-G solvation = -3703.802683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63083 -40.55571 -40.17848 -38.35026 -35.60910 -35.46863 -34.45562 -33.15343 -31.61661 -31.03448 -29.93866 -27.72993 -27.26473 -25.68615 -23.82041 -23.04629 -22.88266 -21.85818 -20.24238 -19.86468 -19.30158 -18.57118 -17.43798 -17.16907 -16.91119 -16.55739 -16.33450 -15.99245 -15.85052 -15.67770 -15.43383 -15.11850 -14.68589 -14.56059 -14.30825 -14.26979 -14.20207 -14.06875 -13.31972 -13.23074 -13.18571 -12.99193 -12.92387 -12.75866 -12.51627 -12.12758 -12.07745 -11.84826 -11.53972 -11.32941 -11.28590 -10.91709 -10.84256 -9.70269 -9.44952 -9.23792 -8.91752 -8.52774 -6.24533 -0.52834 0.40240 0.45307 0.63005 1.02383 1.26028 1.29913 1.48200 2.02289 2.19225 2.25442 2.74871 2.91311 2.99782 3.16536 3.56254 3.77630 3.98787 4.03208 4.10373 4.12545 4.30984 4.34022 4.37622 4.43339 4.45658 4.62669 4.68875 4.71764 4.82029 4.90344 4.94138 4.98735 5.11230 5.19368 5.29440 5.34026 5.40638 5.41930 5.52758 5.63648 5.65535 5.66353 5.76637 5.89381 6.04553 6.20267 6.47264 6.82097 7.14995 7.58417 8.58616 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.002300 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.001644 B =12170.338459 C =13700.608241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.101 4.101 3 C -0.114 4.114 4 C -0.122 4.122 5 C -0.110 4.110 6 C -0.088 4.088 7 C -0.016 4.016 8 C -0.204 4.204 9 C 0.534 3.466 10 O -0.573 6.573 11 N -0.647 5.647 12 C 0.180 3.820 13 C -0.193 4.193 14 C -0.052 4.052 15 C -0.248 4.248 16 C 0.132 3.868 17 O -0.249 6.249 18 C -0.398 4.398 19 H 0.088 0.912 20 C 0.014 3.986 21 N -0.918 5.918 22 Si 0.963 3.037 23 H -0.264 1.264 24 H -0.261 1.261 25 H -0.275 1.275 26 C -0.205 4.205 27 C -0.113 4.113 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.116 0.884 35 H 0.174 0.826 36 H 0.433 0.567 37 H 0.168 0.832 38 H 0.157 0.843 39 H 0.114 0.886 40 H 0.285 0.715 41 H 0.112 0.888 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.182 32.297 4.454 34.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.101 4.101 3 C -0.131 4.131 4 C -0.140 4.140 5 C -0.128 4.128 6 C -0.088 4.088 7 C -0.036 4.036 8 C -0.224 4.224 9 C 0.327 3.673 10 O -0.454 6.454 11 N -0.293 5.293 12 C 0.085 3.915 13 C -0.213 4.213 14 C -0.071 4.071 15 C -0.268 4.268 16 C 0.083 3.917 17 O -0.157 6.157 18 C -0.474 4.474 19 H 0.106 0.894 20 C -0.185 4.185 21 N -0.559 5.559 22 Si 0.786 3.214 23 H -0.189 1.189 24 H -0.186 1.186 25 H -0.201 1.201 26 C -0.226 4.226 27 C -0.131 4.131 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.134 0.866 35 H 0.191 0.809 36 H 0.274 0.726 37 H 0.185 0.815 38 H 0.175 0.825 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.130 0.870 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.807 31.357 4.285 33.779 hybrid contribution -0.144 -0.860 -0.474 0.993 sum -11.951 30.497 3.811 32.976 Atomic orbital electron populations 1.20855 0.89621 1.03670 1.03077 1.20171 0.97465 0.92886 0.99535 1.21573 0.94815 0.98164 0.98583 1.21453 0.94407 0.98838 0.99268 1.21705 1.01282 0.91287 0.98508 1.19036 0.93566 0.92575 1.03672 1.22428 0.94317 0.96983 0.89884 1.22827 0.94865 0.96333 1.08370 1.19170 0.82210 0.90583 0.75363 1.90885 1.69270 1.35005 1.50207 1.43125 1.05973 1.08222 1.71973 1.17323 0.92986 0.85398 0.95769 1.20957 0.95965 1.00003 1.04392 1.21038 0.99462 0.90586 0.95975 1.21365 0.98365 1.00968 1.06096 1.19394 0.93104 0.86497 0.92742 1.83537 1.44247 1.17583 1.70336 1.20769 1.04407 0.88636 1.33612 0.89418 1.25178 1.02001 0.93605 0.97721 1.69708 1.39163 1.03174 1.43820 0.85333 0.78964 0.77986 0.79111 1.18887 1.18562 1.20050 1.20244 1.02805 0.91243 1.08335 1.21475 0.93219 0.98822 0.99603 0.90488 0.91375 0.90072 0.83712 0.83054 0.83349 0.86620 0.80880 0.72613 0.81490 0.82515 0.86782 0.90505 0.87037 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.01 71.24 0.71 -0.33 16 2 C -0.10 -1.34 5.87 -19.91 -0.12 -1.46 16 3 C -0.11 -1.23 9.69 22.35 0.22 -1.01 16 4 C -0.12 -1.25 10.03 22.23 0.22 -1.03 16 5 C -0.11 -1.38 9.41 22.57 0.21 -1.17 16 6 C -0.09 -1.52 5.87 -20.15 -0.12 -1.63 16 7 C -0.02 -0.34 9.46 23.85 0.23 -0.11 16 8 C -0.20 -3.89 9.41 23.61 0.22 -3.66 16 9 C 0.53 15.46 7.58 86.36 0.65 16.11 16 10 O -0.57 -23.38 13.67 -4.38 -0.06 -23.44 16 11 N -0.65 -16.16 5.33 -307.40 -1.64 -17.79 16 12 C 0.18 6.16 6.29 38.17 0.24 6.40 16 13 C -0.19 -5.54 9.97 22.43 0.22 -5.31 16 14 C -0.05 -1.73 10.03 22.23 0.22 -1.51 16 15 C -0.25 -11.21 9.17 22.42 0.21 -11.01 16 16 C 0.13 6.80 6.64 22.56 0.15 6.95 16 17 O -0.25 -14.83 8.58 -22.75 -0.20 -15.03 16 18 C -0.40 -24.61 9.95 67.92 0.68 -23.94 16 19 H 0.09 5.55 5.43 -2.91 -0.02 5.53 16 20 C 0.01 0.83 5.49 84.84 0.47 1.30 16 21 N -0.92 -56.25 13.96 21.61 0.30 -55.95 16 22 Si 0.96 48.63 28.62 68.60 1.96 50.59 16 23 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.28 -14.54 7.11 99.48 0.71 -13.83 16 26 C -0.20 -9.36 8.63 22.52 0.19 -9.16 16 27 C -0.11 -1.88 9.44 22.58 0.21 -1.66 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 30 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 31 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 32 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.15 1.11 6.17 -2.91 -0.02 1.10 16 34 H 0.12 2.87 7.52 -2.91 -0.02 2.84 16 35 H 0.17 1.68 6.07 -2.91 -0.02 1.67 16 36 H 0.43 6.13 8.80 -92.71 -0.82 5.31 16 37 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 39 H 0.11 5.55 5.63 -2.91 -0.02 5.54 16 40 H 0.29 16.01 8.31 -92.71 -0.77 15.24 16 41 H 0.11 5.56 6.23 -2.91 -0.02 5.54 16 42 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -81.70 363.19 5.45 -76.26 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.25 Total: 17.61 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 4.82 Total: -32.25 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -1.34 Total: -73.74 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.26 Total: -38.47 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 1.96 Total: 50.59 kcal Total: -81.70 5.45 -76.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.621 kcal (2) G-P(sol) polarization free energy of solvation -81.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds