Wall clock time and date at job start Tue Mar 31 2020 14:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38163 * 120.02715 * 2 1 4 4 C 1.38243 * 120.05438 * 179.97438 * 3 2 1 5 5 C 1.38289 * 120.11362 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.05159 * 0.02562 * 5 4 3 7 7 C 1.38708 * 120.02785 * 179.97438 * 2 1 3 8 8 O 1.35899 * 120.05461 * 359.97438 * 7 2 1 9 9 C 1.42903 * 116.99930 * 180.02562 * 8 7 2 10 10 C 1.53002 * 109.47006 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46786 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.47111 * 180.02562 * 11 10 9 13 13 C 1.46498 * 119.99871 * 270.00461 * 12 11 10 14 14 C 1.34779 * 120.00099 * 89.99805 * 12 11 10 15 15 O 1.21281 * 119.99652 * 0.02562 * 14 12 11 16 16 C 1.50696 * 120.00079 * 179.97438 * 14 12 11 17 17 S 1.81004 * 109.46836 * 180.02562 * 16 14 12 18 18 C 1.76205 * 99.99576 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00356 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99686 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00040 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47184 * 60.00147 * 22 20 18 24 24 H 1.48500 * 109.47162 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47291 * 299.99779 * 22 20 18 26 26 H 1.08998 * 109.47128 * 270.02582 * 1 2 3 27 27 H 1.08999 * 109.46873 * 30.02607 * 1 2 3 28 28 H 1.09000 * 109.47139 * 150.02308 * 1 2 3 29 29 H 1.08001 * 119.97024 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.94070 * 180.02562 * 4 3 2 31 31 H 1.07993 * 119.96940 * 180.28495 * 5 4 3 32 32 H 1.08000 * 120.02364 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47294 * 300.00489 * 9 8 7 34 34 H 1.08995 * 109.47056 * 60.00501 * 9 8 7 35 35 H 1.08993 * 109.47487 * 299.99875 * 10 9 8 36 36 H 1.09003 * 109.46669 * 60.00618 * 10 9 8 37 37 H 1.08998 * 109.47491 * 300.00452 * 11 10 9 38 38 H 1.09003 * 109.46925 * 60.00881 * 11 10 9 39 39 H 1.09002 * 109.47303 * 90.00238 * 13 12 11 40 40 H 1.09007 * 109.46998 * 209.99409 * 13 12 11 41 41 H 1.08996 * 109.47304 * 329.99848 * 13 12 11 42 42 H 1.08999 * 109.47447 * 300.00535 * 16 14 12 43 43 H 1.08999 * 109.46592 * 60.00581 * 16 14 12 44 44 H 0.97003 * 119.99608 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2753 0.0009 0.0016 6 6 3.5887 -1.1976 0.0016 7 6 2.2012 -1.2009 0.0005 8 8 1.5234 -2.3788 0.0016 9 6 2.3034 -3.5762 0.0027 10 6 1.3732 -4.7909 0.0031 11 6 2.2084 -6.0728 0.0036 12 7 1.3177 -7.2360 0.0034 13 6 0.8718 -7.8173 1.2720 14 6 0.9084 -7.7712 -1.1639 15 8 1.2779 -7.2901 -2.2141 16 6 -0.0073 -8.9680 -1.1641 17 16 -0.3730 -9.4475 -2.8707 18 6 -1.4299 -10.8273 -2.5809 19 1 -1.6606 -11.1279 -1.5696 20 6 -1.9652 -11.5285 -3.6525 21 7 -1.6837 -11.1624 -4.8852 22 14 -3.0851 -12.9917 -3.3454 23 1 -4.2754 -12.5508 -2.5747 24 1 -3.5213 -13.5626 -4.6450 25 1 -2.3495 -14.0244 -2.5725 26 1 -0.3633 0.0005 1.0276 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6584 2.1315 -0.0004 30 1 4.1195 2.1330 0.0010 31 1 5.3552 0.0042 0.0067 32 1 4.1314 -2.1313 0.0029 33 1 2.9324 -3.6009 -0.8872 34 1 2.9322 -3.5993 0.8927 35 1 0.7440 -4.7664 0.8928 36 1 0.7447 -4.7675 -0.8872 37 1 2.8373 -6.0971 -0.8863 38 1 2.8371 -6.0965 0.8937 39 1 -0.0548 -7.3367 1.5862 40 1 0.7007 -8.8859 1.1418 41 1 1.6375 -7.6619 2.0320 42 1 0.4785 -9.7974 -0.6501 43 1 -0.9350 -8.7156 -0.6505 44 1 -2.0582 -11.6522 -5.6341 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055871053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:51 Heat of formation + Delta-G solvation = -78.162459 kcal Electronic energy + Delta-G solvation = -23581.745458 eV Core-core repulsion = 20010.588605 eV Total energy + Delta-G solvation = -3571.156852 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23800 -40.83124 -38.55611 -36.93026 -34.59106 -34.19376 -33.50443 -31.12948 -30.53572 -28.13213 -27.69883 -27.61978 -26.37912 -23.77709 -22.65963 -21.99911 -20.66955 -19.56938 -18.97834 -18.10448 -17.44295 -17.11151 -16.89079 -16.81636 -16.70311 -16.48156 -15.80812 -15.32750 -15.19790 -14.71298 -14.55861 -14.44769 -14.22239 -14.03627 -14.01028 -13.59660 -13.29227 -13.19172 -13.17514 -13.12138 -12.92146 -12.86663 -12.65608 -12.56708 -12.24964 -12.20093 -11.74793 -11.68430 -11.58972 -11.13362 -10.92021 -10.28188 -9.77187 -9.76470 -9.07587 -8.68622 -8.34993 -6.13848 0.37462 0.49408 1.24728 1.43705 1.44845 1.53022 1.56143 1.99135 2.26776 2.35683 2.81373 2.98932 3.25870 3.67463 3.81470 3.86318 3.88750 4.02208 4.09875 4.20188 4.22099 4.26009 4.31519 4.37977 4.41254 4.46437 4.48722 4.58903 4.67225 4.73114 4.77343 4.78903 4.94642 4.96011 4.97596 5.11079 5.30136 5.40681 5.41802 5.52583 5.55620 5.60617 5.90159 6.18745 6.24056 6.45926 7.05838 7.12418 8.74003 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.001934 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.860196 B =14474.932333 C =14820.685606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.141 4.141 3 C -0.090 4.090 4 C -0.160 4.160 5 C -0.093 4.093 6 C -0.216 4.216 7 C 0.105 3.895 8 O -0.331 6.331 9 C 0.067 3.933 10 C -0.125 4.125 11 C 0.122 3.878 12 N -0.611 5.611 13 C 0.070 3.930 14 C 0.529 3.471 15 O -0.564 6.564 16 C -0.124 4.124 17 S -0.156 6.156 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.261 1.261 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.488 20.969 18.987 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.142 4.142 3 C -0.108 4.108 4 C -0.178 4.178 5 C -0.111 4.111 6 C -0.235 4.235 7 C 0.060 3.940 8 O -0.245 6.245 9 C -0.009 4.009 10 C -0.164 4.164 11 C -0.001 4.001 12 N -0.345 5.345 13 C -0.072 4.072 14 C 0.316 3.684 15 O -0.442 6.442 16 C -0.275 4.275 17 S 0.071 5.929 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.185 1.185 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.141 0.859 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.809 21.595 17.294 29.702 hybrid contribution -0.965 -1.528 0.681 1.931 sum 9.844 20.067 17.974 28.682 Atomic orbital electron populations 1.20603 0.90187 1.02707 1.02546 1.19631 0.97277 0.90956 1.06319 1.21207 0.94744 0.96995 0.97818 1.21412 0.94221 0.99103 1.03049 1.21292 1.01080 0.91596 0.97111 1.21514 0.92590 1.00770 1.08612 1.19160 0.91296 0.85714 0.97850 1.86024 1.36883 1.12902 1.88713 1.22739 0.93921 0.81591 1.02618 1.21784 0.99017 0.92671 1.02952 1.21412 0.91555 0.82528 1.04607 1.47834 1.49294 1.31064 1.06281 1.22143 1.01839 0.99393 0.83821 1.20188 0.80358 0.84027 0.83786 1.90681 1.57461 1.63269 1.32836 1.23381 1.02002 0.99115 1.02973 1.85601 1.63182 1.39325 1.04752 1.23163 1.33953 1.16104 0.96173 0.89834 1.26157 0.98024 1.01094 0.93971 1.70187 1.44044 1.41317 0.99237 0.84990 0.78052 0.77028 0.77845 1.18655 1.20425 1.18513 0.90895 0.90186 0.92923 0.83385 0.83512 0.83594 0.84277 0.92014 0.89180 0.89649 0.94005 0.91460 0.85875 0.91455 0.90641 0.87494 0.87184 0.87628 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 9.79 71.24 0.70 -1.18 16 2 C -0.14 -2.85 5.89 -19.77 -0.12 -2.96 16 3 C -0.09 -1.41 9.70 22.25 0.22 -1.19 16 4 C -0.16 -2.23 10.04 22.28 0.22 -2.01 16 5 C -0.09 -1.38 10.04 22.25 0.22 -1.16 16 6 C -0.22 -3.92 9.04 22.36 0.20 -3.72 16 7 C 0.10 2.32 6.66 22.50 0.15 2.47 16 8 O -0.33 -7.91 9.18 -92.41 -0.85 -8.75 16 9 C 0.07 1.25 4.74 71.98 0.34 1.59 16 10 C -0.13 -2.70 5.91 30.60 0.18 -2.52 16 11 C 0.12 2.50 5.45 86.38 0.47 2.97 16 12 N -0.61 -15.61 2.87 -846.75 -2.43 -18.05 16 13 C 0.07 1.13 10.29 127.77 1.31 2.45 16 14 C 0.53 19.99 7.69 87.66 0.67 20.67 16 15 O -0.56 -26.64 15.44 -3.03 -0.05 -26.68 16 16 C -0.12 -4.98 4.71 71.23 0.34 -4.65 16 17 S -0.16 -8.78 20.57 -56.49 -1.16 -9.94 16 18 C -0.55 -31.37 9.50 67.95 0.65 -30.73 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.70 5.49 84.86 0.47 1.17 16 21 N -0.91 -56.47 13.22 21.65 0.29 -56.18 16 22 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 28 H 0.05 1.14 7.53 -2.39 -0.02 1.12 16 29 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 30 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.14 2.04 6.30 -2.91 -0.02 2.03 16 33 H 0.06 1.18 7.66 -2.39 -0.02 1.17 16 34 H 0.09 1.17 7.66 -2.39 -0.02 1.15 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.69 7.42 -2.39 -0.02 1.68 16 38 H 0.12 1.43 7.89 -2.39 -0.02 1.41 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.29 6.44 -2.38 -0.02 1.27 16 41 H 0.11 0.99 7.89 -2.39 -0.02 0.97 16 42 H 0.11 3.96 7.40 -2.40 -0.02 3.94 16 43 H 0.11 3.89 8.11 -2.40 -0.02 3.87 16 44 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -80.87 382.36 4.83 -76.05 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.98 Total: 16.66 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 6.02 Total: -18.79 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -2.15 Total: -74.23 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.90 Total: -35.44 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -80.87 4.83 -76.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055871053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.115 kcal (2) G-P(sol) polarization free energy of solvation -80.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds