Wall clock time and date at job start Tue Mar 31 2020 13:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41755 * 126.56252 * 2 1 4 4 C 1.41024 * 133.21954 * 359.97438 * 3 2 1 5 5 C 1.35347 * 120.76922 * 180.23077 * 4 3 2 6 6 C 1.41123 * 120.34974 * 359.57827 * 5 4 3 7 7 C 1.40362 * 120.86149 * 180.26142 * 6 5 4 8 8 C 1.36265 * 119.76601 * 180.16066 * 7 6 5 9 9 C 1.39200 * 120.93605 * 359.95618 * 8 7 6 10 10 C 1.36282 * 120.85893 * 0.02562 * 9 8 7 11 11 C 1.40282 * 119.71714 * 0.02562 * 10 9 8 12 12 C 1.39882 * 106.32731 * 179.97438 * 3 2 1 13 13 O 1.34548 * 107.73805 * 0.02562 * 12 3 2 14 14 C 1.34990 * 109.81624 * 359.97438 * 13 12 3 15 15 C 1.46896 * 125.37683 * 180.02562 * 14 13 12 16 16 O 1.21663 * 120.00101 * 179.97438 * 15 14 13 17 17 N 1.34777 * 120.00000 * 359.95121 * 15 14 13 18 18 C 1.46495 * 120.00187 * 180.02562 * 17 15 14 19 19 H 1.09003 * 109.47087 * 324.99908 * 18 17 15 20 20 C 1.53001 * 109.47262 * 84.99914 * 18 17 15 21 21 C 1.50700 * 109.47173 * 205.00230 * 18 17 15 22 22 H 1.07996 * 120.00178 * 359.97438 * 21 18 17 23 23 C 1.37881 * 119.99851 * 179.97438 * 21 18 17 24 24 N 1.31517 * 120.00128 * 359.97438 * 23 21 18 25 25 Si 1.86804 * 119.99902 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.46937 * 60.00116 * 25 23 21 27 27 H 1.48497 * 109.47194 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47082 * 300.00451 * 25 23 21 29 29 H 1.08997 * 109.47331 * 90.00562 * 1 2 3 30 30 H 1.09006 * 109.47084 * 210.00619 * 1 2 3 31 31 H 1.09002 * 109.47545 * 330.00486 * 1 2 3 32 32 H 1.08002 * 119.61157 * 359.94911 * 4 3 2 33 33 H 1.08000 * 119.83002 * 179.71924 * 5 4 3 34 34 H 1.07999 * 120.11785 * 0.15150 * 7 6 5 35 35 H 1.07994 * 119.53663 * 179.97438 * 8 7 6 36 36 H 1.07994 * 119.56896 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.13827 * 179.97438 * 10 9 8 38 38 H 0.96999 * 119.99746 * 0.02562 * 17 15 14 39 39 H 1.08998 * 109.47393 * 180.02562 * 20 18 17 40 40 H 1.08994 * 109.46994 * 300.00518 * 20 18 17 41 41 H 1.08998 * 109.46648 * 60.00120 * 20 18 17 42 42 H 0.96993 * 119.99538 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3514 1.1386 0.0000 4 6 2.1013 2.5265 -0.0005 5 6 3.1229 3.4142 -0.0050 6 6 4.4600 2.9626 -0.0004 7 6 5.5276 3.8738 0.0004 8 6 6.8101 3.4131 0.0016 9 6 7.0799 2.0475 0.0028 10 6 6.0678 1.1350 0.0024 11 6 4.7355 1.5742 0.0002 12 6 3.6639 0.6548 0.0006 13 8 3.6053 -0.6894 0.0004 14 6 2.3166 -1.0913 0.0002 15 6 1.8612 -2.4879 0.0005 16 8 0.6710 -2.7397 0.0008 17 7 2.7621 -3.4904 -0.0001 18 6 2.3080 -4.8832 -0.0004 19 1 1.3952 -4.9679 0.5893 20 6 2.0300 -5.3287 -1.4375 21 6 3.3767 -5.7601 0.5996 22 1 4.3018 -5.3236 0.9460 23 6 3.1734 -7.1197 0.7061 24 7 2.0467 -7.6511 0.2847 25 14 4.4985 -8.2067 1.4492 26 1 4.7693 -7.7741 2.8437 27 1 4.0377 -9.6184 1.4501 28 1 5.7415 -8.0917 0.6450 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5140 31 1 -0.3634 0.8900 0.5138 32 1 1.0825 2.8851 -0.0018 33 1 2.9139 4.4738 -0.0099 34 1 5.3335 4.9361 0.0000 35 1 7.6288 4.1174 0.0018 36 1 8.1047 1.7068 0.0041 37 1 6.2905 0.0782 0.0030 38 1 3.7111 -3.2896 -0.0003 39 1 1.6917 -6.3649 -1.4377 40 1 1.2571 -4.6944 -1.8713 41 1 2.9428 -5.2440 -2.0271 42 1 1.9036 -8.6075 0.3601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:53 Heat of formation + Delta-G solvation = 0.145701 kcal Electronic energy + Delta-G solvation = -26086.920857 eV Core-core repulsion = 22383.715750 eV Total energy + Delta-G solvation = -3703.205107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.78534 -39.87480 -38.72695 -36.31465 -35.04593 -33.54725 -32.59198 -32.28868 -30.02375 -29.54766 -28.68244 -27.21112 -25.29912 -24.14395 -23.63238 -22.39490 -21.67718 -20.01297 -19.66296 -18.65705 -17.83911 -16.93810 -16.45630 -16.34579 -15.78235 -15.58898 -15.29183 -14.68239 -14.31197 -14.10468 -14.04620 -13.50935 -13.41412 -13.34490 -13.05362 -12.89091 -12.60064 -12.47808 -12.41942 -11.90410 -11.74926 -11.43252 -11.40457 -11.13527 -11.02749 -10.99094 -10.81493 -10.37923 -10.26821 -9.94051 -9.62063 -9.42055 -9.11675 -8.60716 -8.26248 -8.06437 -7.88330 -6.15921 -4.25482 0.37409 0.47621 1.67591 1.81630 2.51596 2.86905 3.24798 3.29798 3.31241 3.67191 3.83823 3.85094 4.32449 4.35858 4.48952 4.67074 4.73031 4.74588 4.84091 5.05014 5.11596 5.15859 5.16696 5.32010 5.40328 5.61577 5.70622 5.78462 5.82077 5.86592 6.02743 6.03189 6.20277 6.27306 6.33114 6.40647 6.50083 6.65504 6.76443 6.89767 6.95657 7.07408 7.29756 7.48657 7.64381 7.84444 8.08128 8.50838 8.66976 8.91124 9.41491 10.90159 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.003171 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.583679 B = 8827.085966 C =10363.435825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.054 4.054 5 C -0.132 4.132 6 C -0.026 4.026 7 C -0.110 4.110 8 C -0.109 4.109 9 C -0.122 4.122 10 C -0.094 4.094 11 C -0.027 4.027 12 C 0.066 3.934 13 O -0.159 6.159 14 C -0.029 4.029 15 C 0.584 3.416 16 O -0.525 6.525 17 N -0.691 5.691 18 C 0.264 3.736 19 H 0.053 0.947 20 C -0.148 4.148 21 C -0.537 4.537 22 H 0.062 0.938 23 C 0.068 3.932 24 N -0.883 5.883 25 Si 0.903 3.097 26 H -0.276 1.276 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.395 0.605 39 H 0.093 0.907 40 H 0.016 0.984 41 H 0.028 0.972 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.608 23.110 -1.306 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.073 4.073 5 C -0.150 4.150 6 C -0.026 4.026 7 C -0.128 4.128 8 C -0.128 4.128 9 C -0.140 4.140 10 C -0.112 4.112 11 C -0.027 4.027 12 C 0.015 3.985 13 O -0.057 6.057 14 C -0.080 4.080 15 C 0.367 3.633 16 O -0.405 6.405 17 N -0.337 5.337 18 C 0.163 3.837 19 H 0.071 0.929 20 C -0.207 4.207 21 C -0.575 4.575 22 H 0.080 0.920 23 C -0.136 4.136 24 N -0.520 5.520 25 Si 0.731 3.269 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.228 0.772 39 H 0.111 0.889 40 H 0.035 0.965 41 H 0.047 0.953 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.900 22.460 -1.321 23.026 hybrid contribution 1.231 -0.478 0.352 1.366 sum 6.131 21.982 -0.969 22.841 Atomic orbital electron populations 1.20421 0.87647 1.03730 1.02962 1.20310 0.97503 0.89686 1.01932 1.18758 0.92257 0.94536 1.08369 1.20234 0.99743 0.90008 0.97266 1.20753 0.90939 0.99756 1.03584 1.17829 0.94264 0.90843 0.99657 1.20955 0.91918 0.99042 1.00867 1.20913 0.96882 0.95734 0.99222 1.20862 0.99409 0.93066 1.00630 1.21094 0.91267 1.00601 0.98273 1.16865 0.91011 0.90407 1.04413 1.19658 0.94925 0.81271 1.02663 1.84089 1.28221 1.20151 1.73246 1.22504 0.80040 0.96063 1.09419 1.16679 0.86525 0.81302 0.78801 1.90803 1.15270 1.82080 1.52306 1.46569 1.08923 1.08191 1.70018 1.18879 0.96719 0.73794 0.94354 0.92906 1.22094 0.98004 1.03514 0.97068 1.21161 1.02363 0.92224 1.41773 0.91987 1.24876 0.95854 0.97777 0.95063 1.69885 1.23981 1.12490 1.45672 0.86476 0.81517 0.79244 0.79705 1.20112 1.21068 1.20096 0.90777 0.88784 0.91779 0.85264 0.84905 0.85130 0.85746 0.85588 0.84994 0.77223 0.88860 0.96455 0.95285 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 9.78 36.01 0.35 -0.92 16 2 C -0.09 -1.47 6.21 -104.13 -0.65 -2.11 16 3 C -0.14 -2.01 6.14 -106.88 -0.66 -2.66 16 4 C -0.05 -0.61 10.00 -39.56 -0.40 -1.01 16 5 C -0.13 -1.31 9.71 -39.52 -0.38 -1.69 16 6 C -0.03 -0.29 5.75 -106.74 -0.61 -0.90 16 7 C -0.11 -0.95 9.75 -39.49 -0.38 -1.34 16 8 C -0.11 -0.89 9.95 -39.93 -0.40 -1.29 16 9 C -0.12 -1.13 9.96 -39.93 -0.40 -1.52 16 10 C -0.09 -1.09 9.76 -39.52 -0.39 -1.48 16 11 C -0.03 -0.35 5.75 -106.74 -0.61 -0.96 16 12 C 0.07 1.00 7.15 -37.85 -0.27 0.73 16 13 O -0.16 -2.69 10.36 3.12 0.03 -2.66 16 14 C -0.03 -0.53 7.08 -36.92 -0.26 -0.79 16 15 C 0.58 12.30 7.76 -12.76 -0.10 12.20 16 16 O -0.52 -12.21 14.27 5.22 0.07 -12.14 16 17 N -0.69 -15.05 5.07 -56.18 -0.28 -15.33 16 18 C 0.26 6.72 2.56 -69.08 -0.18 6.54 16 19 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 20 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 21 C -0.54 -14.27 8.73 -34.44 -0.30 -14.57 16 22 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 23 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 24 N -0.88 -24.67 11.32 55.43 0.63 -24.04 16 25 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 1.51 6.36 -51.93 -0.33 1.18 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.39 7.79 8.27 -40.82 -0.34 7.46 16 39 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -30.42 357.69 -9.71 -40.13 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.15 Total: 6.46 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -5.38 Total: -13.40 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.34 Total: -39.37 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.11 Total: -14.80 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.42 -9.71 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.271 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds