Wall clock time and date at job start Tue Mar 31 2020 13:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41755 * 126.56252 * 2 1 4 4 C 1.41024 * 133.21954 * 359.97438 * 3 2 1 5 5 C 1.35347 * 120.76922 * 180.23077 * 4 3 2 6 6 C 1.41123 * 120.34974 * 359.57827 * 5 4 3 7 7 C 1.40362 * 120.86149 * 180.26142 * 6 5 4 8 8 C 1.36265 * 119.76601 * 180.16066 * 7 6 5 9 9 C 1.39200 * 120.93605 * 359.95618 * 8 7 6 10 10 C 1.36282 * 120.85893 * 0.02562 * 9 8 7 11 11 C 1.40282 * 119.71714 * 0.02562 * 10 9 8 12 12 C 1.39882 * 106.32731 * 179.97438 * 3 2 1 13 13 O 1.34548 * 107.73805 * 0.02562 * 12 3 2 14 14 C 1.34990 * 109.81624 * 359.97438 * 13 12 3 15 15 C 1.46896 * 125.37683 * 180.02562 * 14 13 12 16 16 O 1.21663 * 120.00101 * 179.97438 * 15 14 13 17 17 N 1.34777 * 120.00000 * 359.95121 * 15 14 13 18 18 C 1.46495 * 120.00187 * 180.02562 * 17 15 14 19 19 H 1.09003 * 109.47087 * 324.99908 * 18 17 15 20 20 C 1.53001 * 109.47262 * 84.99914 * 18 17 15 21 21 C 1.50700 * 109.47173 * 205.00230 * 18 17 15 22 22 H 1.07996 * 120.00178 * 359.97438 * 21 18 17 23 23 C 1.37881 * 119.99851 * 179.97438 * 21 18 17 24 24 N 1.31517 * 120.00128 * 359.97438 * 23 21 18 25 25 Si 1.86804 * 119.99902 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.46937 * 60.00116 * 25 23 21 27 27 H 1.48497 * 109.47194 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47082 * 300.00451 * 25 23 21 29 29 H 1.08997 * 109.47331 * 90.00562 * 1 2 3 30 30 H 1.09006 * 109.47084 * 210.00619 * 1 2 3 31 31 H 1.09002 * 109.47545 * 330.00486 * 1 2 3 32 32 H 1.08002 * 119.61157 * 359.94911 * 4 3 2 33 33 H 1.08000 * 119.83002 * 179.71924 * 5 4 3 34 34 H 1.07999 * 120.11785 * 0.15150 * 7 6 5 35 35 H 1.07994 * 119.53663 * 179.97438 * 8 7 6 36 36 H 1.07994 * 119.56896 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.13827 * 179.97438 * 10 9 8 38 38 H 0.96999 * 119.99746 * 0.02562 * 17 15 14 39 39 H 1.08998 * 109.47393 * 180.02562 * 20 18 17 40 40 H 1.08994 * 109.46994 * 300.00518 * 20 18 17 41 41 H 1.08998 * 109.46648 * 60.00120 * 20 18 17 42 42 H 0.96993 * 119.99538 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3514 1.1386 0.0000 4 6 2.1013 2.5265 -0.0005 5 6 3.1229 3.4142 -0.0050 6 6 4.4600 2.9626 -0.0004 7 6 5.5276 3.8738 0.0004 8 6 6.8101 3.4131 0.0016 9 6 7.0799 2.0475 0.0028 10 6 6.0678 1.1350 0.0024 11 6 4.7355 1.5742 0.0002 12 6 3.6639 0.6548 0.0006 13 8 3.6053 -0.6894 0.0004 14 6 2.3166 -1.0913 0.0002 15 6 1.8612 -2.4879 0.0005 16 8 0.6710 -2.7397 0.0008 17 7 2.7621 -3.4904 -0.0001 18 6 2.3080 -4.8832 -0.0004 19 1 1.3952 -4.9679 0.5893 20 6 2.0300 -5.3287 -1.4375 21 6 3.3767 -5.7601 0.5996 22 1 4.3018 -5.3236 0.9460 23 6 3.1734 -7.1197 0.7061 24 7 2.0467 -7.6511 0.2847 25 14 4.4985 -8.2067 1.4492 26 1 4.7693 -7.7741 2.8437 27 1 4.0377 -9.6184 1.4501 28 1 5.7415 -8.0917 0.6450 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5140 31 1 -0.3634 0.8900 0.5138 32 1 1.0825 2.8851 -0.0018 33 1 2.9139 4.4738 -0.0099 34 1 5.3335 4.9361 0.0000 35 1 7.6288 4.1174 0.0018 36 1 8.1047 1.7068 0.0041 37 1 6.2905 0.0782 0.0030 38 1 3.7111 -3.2896 -0.0003 39 1 1.6917 -6.3649 -1.4377 40 1 1.2571 -4.6944 -1.8713 41 1 2.9428 -5.2440 -2.0271 42 1 1.9036 -8.6075 0.3601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064346252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:52 Heat of formation + Delta-G solvation = -16.582215 kcal Electronic energy + Delta-G solvation = -26087.646234 eV Core-core repulsion = 22383.715750 eV Total energy + Delta-G solvation = -3703.930484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.93083 -40.86034 -40.28859 -37.26336 -36.86954 -34.74150 -34.38945 -33.26177 -31.34337 -30.81498 -29.78487 -28.52109 -27.39011 -25.32726 -24.47547 -23.32034 -23.18927 -21.68439 -20.89389 -20.04440 -18.92072 -18.30647 -17.70362 -17.53867 -17.30580 -16.84753 -16.44120 -16.28815 -15.74679 -15.57433 -14.91205 -14.82291 -14.50256 -14.37659 -14.26967 -14.14055 -14.02101 -13.75554 -13.67551 -13.25289 -13.06795 -12.94944 -12.92890 -12.78294 -12.32849 -12.28227 -12.18551 -12.15043 -11.85117 -11.20015 -11.12258 -10.81750 -10.65843 -10.63114 -9.97129 -9.17366 -8.85664 -8.22191 -6.40198 -0.65345 -0.34651 0.51745 0.96271 1.32173 1.42716 1.44867 1.52914 1.93929 2.15096 2.24248 2.45916 3.02931 3.08036 3.42335 3.46274 3.62528 3.85099 3.93062 3.98187 4.08524 4.26357 4.36545 4.39306 4.46633 4.67287 4.70970 4.73918 4.85173 4.86820 4.89040 4.98668 5.00227 5.02078 5.19995 5.28215 5.34010 5.36773 5.46181 5.50679 5.53024 5.55365 5.61783 5.78746 5.89353 5.99826 6.01387 6.62544 6.72340 7.12380 7.33375 8.84176 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.003171 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.583679 B = 8827.085966 C =10363.435825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.076 4.076 3 C -0.151 4.151 4 C -0.071 4.071 5 C -0.113 4.113 6 C -0.038 4.038 7 C -0.103 4.103 8 C -0.105 4.105 9 C -0.114 4.114 10 C -0.123 4.123 11 C -0.055 4.055 12 C 0.048 3.952 13 O -0.174 6.174 14 C -0.073 4.073 15 C 0.585 3.415 16 O -0.556 6.556 17 N -0.693 5.693 18 C 0.271 3.729 19 H 0.010 0.990 20 C -0.135 4.135 21 C -0.555 4.555 22 H 0.069 0.931 23 C 0.019 3.981 24 N -0.914 5.914 25 Si 0.974 3.026 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.265 1.265 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.403 0.597 39 H 0.073 0.927 40 H 0.017 0.983 41 H 0.038 0.962 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.770 27.165 -1.130 28.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.152 4.152 4 C -0.089 4.089 5 C -0.131 4.131 6 C -0.038 4.038 7 C -0.121 4.121 8 C -0.123 4.123 9 C -0.132 4.132 10 C -0.141 4.141 11 C -0.056 4.056 12 C -0.002 4.002 13 O -0.074 6.074 14 C -0.123 4.123 15 C 0.372 3.628 16 O -0.438 6.438 17 N -0.340 5.340 18 C 0.169 3.831 19 H 0.028 0.972 20 C -0.193 4.193 21 C -0.593 4.593 22 H 0.087 0.913 23 C -0.182 4.182 24 N -0.551 5.551 25 Si 0.798 3.202 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.190 1.190 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.175 0.825 33 H 0.194 0.806 34 H 0.187 0.813 35 H 0.179 0.821 36 H 0.166 0.834 37 H 0.138 0.862 38 H 0.238 0.762 39 H 0.092 0.908 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.079 26.543 -1.150 27.495 hybrid contribution 0.688 -1.464 0.294 1.644 sum 7.766 25.079 -0.856 26.268 Atomic orbital electron populations 1.20473 0.86422 1.04104 1.03619 1.20690 0.98392 0.89779 0.99077 1.19013 0.91295 0.95804 1.09094 1.20554 1.01821 0.88339 0.98153 1.21255 0.89814 1.01584 1.00400 1.18264 0.95994 0.90154 0.99384 1.21425 0.91208 1.00458 0.98978 1.21387 0.98057 0.95599 0.97218 1.21227 0.99828 0.93585 0.98569 1.21163 0.91690 1.00855 1.00408 1.17216 0.91033 0.91269 1.06035 1.20243 0.96518 0.80611 1.02864 1.84006 1.27515 1.21608 1.74225 1.21824 0.81322 0.94784 1.14359 1.16948 0.85969 0.82432 0.77500 1.90765 1.16369 1.83165 1.53525 1.46327 1.09555 1.07185 1.70945 1.18506 0.94994 0.75776 0.93854 0.97230 1.21917 0.98281 1.02162 0.96984 1.21466 1.02742 0.92875 1.42198 0.91312 1.25772 0.98038 0.99104 0.95266 1.70023 1.25794 1.12865 1.46448 0.85377 0.78814 0.77140 0.78907 1.19650 1.20671 1.18962 0.89828 0.91372 0.88307 0.82471 0.80630 0.81311 0.82124 0.83398 0.86161 0.76208 0.90795 0.96441 0.94310 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.54 9.78 71.24 0.70 -1.84 16 2 C -0.08 -2.53 6.21 -19.54 -0.12 -2.65 16 3 C -0.15 -4.35 6.14 -21.33 -0.13 -4.48 16 4 C -0.07 -1.41 10.00 22.29 0.22 -1.19 16 5 C -0.11 -1.78 9.71 22.31 0.22 -1.56 16 6 C -0.04 -0.72 5.75 -21.24 -0.12 -0.85 16 7 C -0.10 -1.28 9.75 22.33 0.22 -1.06 16 8 C -0.10 -1.23 9.95 22.04 0.22 -1.01 16 9 C -0.11 -1.82 9.96 22.04 0.22 -1.60 16 10 C -0.12 -2.83 9.76 22.31 0.22 -2.61 16 11 C -0.06 -1.43 5.75 -21.24 -0.12 -1.55 16 12 C 0.05 1.51 7.15 23.39 0.17 1.67 16 13 O -0.17 -6.34 10.36 -11.76 -0.12 -6.46 16 14 C -0.07 -2.81 7.08 23.99 0.17 -2.64 16 15 C 0.59 26.60 7.76 86.51 0.67 27.27 16 16 O -0.56 -27.91 14.27 -4.23 -0.06 -27.97 16 17 N -0.69 -32.34 5.07 -449.88 -2.28 -34.62 16 18 C 0.27 14.66 2.56 44.25 0.11 14.78 16 19 H 0.01 0.61 7.58 -2.39 -0.02 0.59 16 20 C -0.13 -7.03 9.26 71.98 0.67 -6.37 16 21 C -0.55 -30.52 8.73 25.60 0.22 -30.30 16 22 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 23 C 0.02 1.03 5.30 84.66 0.45 1.48 16 24 N -0.91 -52.69 11.32 21.45 0.24 -52.45 16 25 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.31 6.36 -2.38 -0.02 2.29 16 31 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 36 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.40 17.08 8.27 -92.71 -0.77 16.32 16 39 H 0.07 4.14 6.07 -2.39 -0.01 4.13 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -71.15 357.69 4.08 -67.07 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.30 Total: 24.17 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 3.97 Total: -14.51 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -2.04 Total: -87.07 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.18 Total: -34.43 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -71.15 4.08 -67.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.487 kcal (2) G-P(sol) polarization free energy of solvation -71.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds