Wall clock time and date at job start Tue Mar 31 2020 14:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38236 * 119.99699 * 2 1 4 4 C 1.38239 * 119.99669 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99565 * 179.97438 * 4 3 2 6 6 C 1.38228 * 120.00178 * 359.97234 * 4 3 2 7 7 C 1.50696 * 120.00447 * 179.97438 * 6 4 3 8 8 C 1.38235 * 120.00053 * 359.97438 * 6 4 3 9 9 S 1.76203 * 120.00304 * 179.97438 * 8 6 4 10 10 O 1.42098 * 106.39961 * 329.70163 * 9 8 6 11 11 O 1.42104 * 106.40216 * 196.77771 * 9 8 6 12 12 N 1.65601 * 107.21458 * 83.23967 * 9 8 6 13 13 C 1.36937 * 120.00073 * 90.00686 * 12 9 8 14 14 H 1.08001 * 119.99559 * 303.61670 * 13 12 9 15 15 C 1.38806 * 120.00556 * 123.61696 * 13 12 9 16 16 N 1.31621 * 120.00260 * 167.05509 * 15 13 12 17 17 Si 1.86807 * 119.99916 * 347.05887 * 15 13 12 18 18 H 1.48497 * 109.47098 * 95.71189 * 17 15 13 19 19 H 1.48490 * 109.47167 * 215.71488 * 17 15 13 20 20 H 1.48503 * 109.46916 * 335.71611 * 17 15 13 21 21 C 1.46497 * 119.99858 * 270.27347 * 12 9 8 22 22 C 1.53004 * 117.49752 * 181.15952 * 21 12 9 23 23 C 1.53003 * 117.49856 * 112.50550 * 21 12 9 24 24 C 1.38233 * 119.99892 * 180.16258 * 2 1 3 25 25 C 1.50696 * 120.00507 * 0.06636 * 24 2 1 26 26 H 1.09009 * 109.46775 * 92.60541 * 1 2 3 27 27 H 1.08995 * 109.46957 * 212.60484 * 1 2 3 28 28 H 1.08998 * 109.47261 * 332.60904 * 1 2 3 29 29 H 1.08000 * 120.00390 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47290 * 269.96879 * 5 4 3 31 31 H 1.08995 * 109.47573 * 29.98081 * 5 4 3 32 32 H 1.09002 * 109.46545 * 149.97785 * 5 4 3 33 33 H 1.08998 * 109.47298 * 269.98374 * 7 6 4 34 34 H 1.09005 * 109.46558 * 29.97972 * 7 6 4 35 35 H 1.08999 * 109.47616 * 149.98176 * 7 6 4 36 36 H 0.97006 * 119.99666 * 180.02562 * 16 15 13 37 37 H 1.08996 * 115.55456 * 326.82982 * 21 12 9 38 38 H 1.08998 * 117.50151 * 0.02562 * 22 21 12 39 39 H 1.09009 * 117.49866 * 145.02233 * 22 21 12 40 40 H 1.09002 * 117.49716 * 214.98448 * 23 21 12 41 41 H 1.09003 * 117.49634 * 359.97261 * 23 21 12 42 42 H 1.08994 * 109.47474 * 253.70972 * 25 24 2 43 43 H 1.09011 * 109.46741 * 13.70433 * 25 24 2 44 44 H 1.09000 * 109.47183 * 133.69812 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3340 2.5023 0.0000 6 6 4.2717 0.0001 0.0016 7 6 5.7787 0.0000 0.0016 8 6 3.5806 -1.1971 0.0028 9 16 4.4616 -2.7230 0.0035 10 8 5.6812 -2.4825 -0.6849 11 8 3.5317 -3.7234 -0.3889 12 7 4.8685 -3.0533 1.5744 13 6 4.0170 -3.7786 2.3643 14 1 2.9999 -3.4457 2.5096 15 6 4.4609 -4.9417 2.9782 16 7 3.7420 -5.4997 3.9291 17 14 6.0789 -5.7150 2.4549 18 1 7.1615 -5.2611 3.3644 19 1 5.9647 -7.1941 2.5208 20 1 6.3966 -5.3044 1.0636 21 6 6.1368 -2.5644 2.1208 22 6 6.4676 -2.9257 3.5703 23 6 6.0702 -1.4920 3.2101 24 6 2.1982 -1.1971 -0.0034 25 6 1.4448 -2.5023 -0.0086 26 1 -0.3633 -0.0467 -1.0267 27 1 -0.3633 -0.8657 0.5537 28 1 -0.3634 0.9124 0.4728 29 1 1.6582 2.1325 -0.0004 30 1 4.5165 2.8161 -1.0278 31 1 3.7446 3.2624 0.5127 32 1 5.2860 2.3724 0.5146 33 1 6.1420 -0.0012 -1.0260 34 1 6.1420 0.8907 0.5144 35 1 6.1421 -0.8893 0.5166 36 1 4.0525 -6.3123 4.3584 37 1 6.9646 -2.5127 1.4136 38 1 5.7418 -3.5274 4.1172 39 1 7.5131 -3.1112 3.8167 40 1 6.8543 -0.7349 3.2196 41 1 5.0827 -1.1500 3.5198 42 1 1.5118 -2.9644 0.9762 43 1 0.3986 -2.3169 -0.2525 44 1 1.8788 -3.1693 -0.7534 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065264803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:44 Heat of formation + Delta-G solvation = -7.219876 kcal Electronic energy + Delta-G solvation = -27484.187213 eV Core-core repulsion = 23916.106662 eV Total energy + Delta-G solvation = -3568.080551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.65031 -37.57013 -36.57695 -34.87512 -34.47776 -32.99645 -32.59860 -31.34237 -29.28647 -28.84766 -25.53186 -24.78155 -23.95911 -22.52903 -21.79804 -20.89751 -19.29385 -18.51923 -17.24295 -16.89873 -16.25303 -16.03929 -15.09868 -14.97248 -14.48883 -14.32876 -13.79816 -13.56712 -13.37402 -13.25539 -13.06701 -12.93702 -12.61539 -12.47825 -12.41040 -12.23285 -11.98591 -11.85873 -11.71054 -11.52477 -11.37386 -11.23244 -11.03044 -10.93568 -10.76058 -10.63022 -10.53070 -10.21170 -10.05182 -9.83754 -9.57178 -9.43208 -8.86212 -8.64136 -7.97821 -7.75268 -6.42525 -4.23715 1.15842 1.48755 1.58721 3.20578 3.31607 3.40484 3.64773 4.09020 4.26325 4.53978 4.65709 4.82732 4.90079 4.99204 5.10321 5.25978 5.31138 5.36798 5.43994 5.58960 5.61167 5.65920 5.70488 5.75720 5.76886 5.78380 5.83664 5.95430 6.03103 6.06264 6.18654 6.21198 6.31792 6.32295 6.44496 6.52483 6.55837 6.71231 6.74777 6.77260 7.02869 7.05638 7.26384 7.36050 7.63279 8.27093 9.09369 9.13503 10.63587 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.006396 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.649567 B = 4376.782478 C = 5041.660739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.125 4.125 3 C -0.068 4.068 4 C -0.126 4.126 5 C -0.111 4.111 6 C 0.020 3.980 7 C -0.142 4.142 8 C -0.658 4.658 9 S 2.640 3.360 10 O -0.997 6.997 11 O -0.955 6.955 12 N -0.835 5.835 13 C -0.297 4.297 14 H 0.097 0.903 15 C 0.084 3.916 16 N -0.859 5.859 17 Si 0.877 3.123 18 H -0.262 1.262 19 H -0.289 1.289 20 H -0.264 1.264 21 C 0.068 3.932 22 C -0.180 4.180 23 C -0.192 4.192 24 C 0.028 3.972 25 C -0.166 4.166 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.276 0.724 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 12.261 -4.225 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.125 4.125 3 C -0.087 4.087 4 C -0.127 4.127 5 C -0.167 4.167 6 C 0.018 3.982 7 C -0.198 4.198 8 C -0.743 4.743 9 S 2.741 3.259 10 O -0.987 6.987 11 O -0.944 6.944 12 N -0.664 5.664 13 C -0.433 4.433 14 H 0.115 0.885 15 C -0.127 4.127 16 N -0.495 5.495 17 Si 0.703 3.297 18 H -0.187 1.187 19 H -0.216 1.216 20 H -0.188 1.188 21 C -0.039 4.039 22 C -0.218 4.218 23 C -0.232 4.232 24 C 0.027 3.973 25 C -0.223 4.223 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.025 11.680 -4.982 12.698 hybrid contribution 0.327 0.280 0.223 0.485 sum 0.352 11.960 -4.759 12.877 Atomic orbital electron populations 1.20783 0.91161 1.02744 1.02070 1.19803 0.96030 0.92695 1.04002 1.20996 0.93477 0.97236 0.96942 1.19713 0.93728 0.94846 1.04428 1.20786 1.00198 0.93730 1.02007 1.19350 0.95752 0.91195 0.91860 1.21401 0.90459 1.04028 1.03934 1.30909 1.05459 1.20421 1.17497 1.04618 0.73228 0.73528 0.74509 1.93425 1.44728 1.86364 1.74157 1.93377 1.63233 1.56453 1.81382 1.52399 1.24823 1.63481 1.25673 1.18530 0.95412 1.03405 1.25945 0.88539 1.25698 0.97833 0.94847 0.94362 1.69805 1.38524 1.19718 1.21444 0.86837 0.83878 0.78173 0.80818 1.18701 1.21583 1.18842 1.21721 0.89349 1.01791 0.91088 1.23486 1.01652 0.98802 0.97888 1.23291 1.02508 0.91893 1.05525 1.19552 0.91490 0.95883 0.90400 1.21850 0.99302 0.94107 1.06993 0.91540 0.90825 0.91966 0.86181 0.91558 0.91961 0.91031 0.89695 0.91128 0.89324 0.91431 0.86330 0.85852 0.89721 0.89818 0.88506 0.88932 0.91981 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.16 36.01 0.33 -1.04 16 2 C -0.12 -1.97 5.88 -104.62 -0.62 -2.59 16 3 C -0.07 -0.99 9.35 -39.58 -0.37 -1.36 16 4 C -0.13 -1.91 5.88 -104.63 -0.62 -2.53 16 5 C -0.11 -1.25 9.60 36.00 0.35 -0.90 16 6 C 0.02 0.35 5.87 -104.63 -0.61 -0.27 16 7 C -0.14 -2.29 8.06 36.00 0.29 -2.00 16 8 C -0.66 -13.09 5.97 -39.58 -0.24 -13.33 16 9 S 2.64 59.72 5.11 -107.50 -0.55 59.17 16 10 O -1.00 -22.90 13.84 -57.17 -0.79 -23.69 16 11 O -0.95 -23.40 12.91 -57.17 -0.74 -24.14 16 12 N -0.84 -19.28 2.42 -53.43 -0.13 -19.41 16 13 C -0.30 -7.59 8.55 -15.06 -0.13 -7.72 16 14 H 0.10 2.61 7.27 -52.49 -0.38 2.23 16 15 C 0.08 2.19 3.86 -17.43 -0.07 2.12 16 16 N -0.86 -23.30 13.97 55.49 0.78 -22.52 16 17 Si 0.88 20.89 24.70 -169.99 -4.20 16.69 16 18 H -0.26 -5.70 6.13 56.52 0.35 -5.35 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.07 1.40 3.13 -67.93 -0.21 1.18 16 22 C -0.18 -3.52 6.77 -26.69 -0.18 -3.70 16 23 C -0.19 -3.39 10.23 -26.69 -0.27 -3.67 16 24 C 0.03 0.52 5.88 -104.62 -0.62 -0.09 16 25 C -0.17 -3.08 8.14 36.00 0.29 -2.79 16 26 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.07 0.91 6.53 -51.93 -0.34 0.57 16 28 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.07 0.76 5.95 -51.93 -0.31 0.45 16 33 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 34 H 0.07 0.91 5.95 -51.93 -0.31 0.60 16 35 H 0.09 1.56 3.11 -51.93 -0.16 1.40 16 36 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.12 2.29 6.99 -51.93 -0.36 1.93 16 38 H 0.12 2.76 5.28 -51.93 -0.27 2.48 16 39 H 0.08 1.47 7.96 -51.92 -0.41 1.06 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 42 H 0.09 1.86 7.35 -51.93 -0.38 1.48 16 43 H 0.06 0.94 5.93 -51.92 -0.31 0.63 16 44 H 0.12 2.52 5.29 -52.13 -0.28 2.24 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -29.43 340.39 -9.25 -38.68 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.08 Total: 8.77 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: -2.67 Total: -38.67 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.65 Total: -41.94 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -1.53 Total: -47.83 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.20 Total: 16.69 kcal Atomic # 16 Polarization: 59.72 SS G_CDS: -0.55 Total: 59.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.43 -9.25 -38.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065264803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.459 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds