Wall clock time and date at job start Tue Mar 31 2020 14:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38260 * 120.00075 * 2 1 4 4 C 1.38208 * 119.99730 * 180.26976 * 3 2 1 5 5 C 1.38258 * 120.00214 * 359.75293 * 4 3 2 6 6 C 1.38213 * 120.00022 * 359.97364 * 5 4 3 7 7 C 1.38217 * 119.99870 * 179.74647 * 2 1 3 8 8 C 1.50693 * 119.99955 * 359.97438 * 7 2 1 9 9 H 1.09003 * 115.56500 * 334.03520 * 8 7 2 10 10 C 1.53081 * 117.49430 * 188.32577 * 8 7 2 11 11 C 1.53006 * 59.98378 * 252.51478 * 10 8 7 12 12 H 1.08992 * 117.49636 * 107.49984 * 11 10 8 13 13 N 1.46500 * 117.49456 * 252.49662 * 11 10 8 14 14 S 1.65598 * 119.99523 * 213.74774 * 13 11 10 15 15 O 1.42101 * 104.28071 * 308.93108 * 14 13 11 16 16 O 1.42103 * 104.27787 * 181.07577 * 14 13 11 17 17 C 1.81403 * 104.45114 * 65.00132 * 14 13 11 18 18 C 1.52994 * 109.47158 * 179.97438 * 17 14 13 19 19 C 1.52996 * 109.47119 * 179.97438 * 18 17 14 20 20 C 1.50702 * 109.47159 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72211 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48496 * 109.47341 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46983 * 120.00379 * 24 22 20 27 27 H 1.48503 * 109.47491 * 240.00192 * 24 22 20 28 28 H 1.08996 * 109.47436 * 270.25280 * 1 2 3 29 29 H 1.08999 * 109.47187 * 30.25447 * 1 2 3 30 30 H 1.08996 * 109.47223 * 150.25058 * 1 2 3 31 31 H 1.07999 * 120.00011 * 0.04859 * 3 2 1 32 32 H 1.08005 * 120.00019 * 179.77017 * 4 3 2 33 33 H 1.08000 * 120.00255 * 179.97438 * 5 4 3 34 34 H 1.07998 * 120.00106 * 179.97438 * 6 5 4 35 35 H 1.09004 * 117.51133 * 145.03403 * 10 8 7 36 36 H 1.08994 * 117.48880 * 0.02562 * 10 8 7 37 37 H 0.96997 * 120.00089 * 33.75221 * 13 11 10 38 38 H 1.08998 * 109.46785 * 60.00241 * 17 14 13 39 39 H 1.08994 * 109.46954 * 300.00048 * 17 14 13 40 40 H 1.09004 * 109.46806 * 60.00263 * 18 17 14 41 41 H 1.09000 * 109.47828 * 300.00567 * 18 17 14 42 42 H 1.09004 * 109.47066 * 60.00422 * 19 18 17 43 43 H 1.08994 * 109.47405 * 300.00252 * 19 18 17 44 44 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0056 5 6 4.2717 -0.0001 -0.0061 6 6 3.5806 -1.1970 -0.0004 7 6 2.1981 -1.1970 0.0053 8 6 1.4446 -2.5020 0.0117 9 1 0.4439 -2.4653 0.4424 10 6 2.2548 -3.7849 0.2139 11 6 1.6736 -3.4558 -1.1626 12 1 2.3690 -3.1391 -1.9398 13 7 0.5313 -4.2498 -1.6220 14 16 0.3576 -4.5960 -3.2320 15 8 0.4768 -3.3351 -3.8765 16 8 -0.8492 -5.3431 -3.3016 17 6 1.7817 -5.6488 -3.6249 18 6 1.7336 -6.0409 -5.1029 19 6 2.9351 -6.9284 -5.4344 20 6 2.8881 -7.3142 -6.8904 21 1 2.0821 -6.9613 -7.5169 22 6 3.8774 -8.1125 -7.4244 23 7 4.8590 -8.5418 -6.6616 24 14 3.8233 -8.5844 -9.2309 25 1 2.6259 -7.9771 -9.8655 26 1 5.0477 -8.0881 -9.9091 27 1 3.7535 -10.0626 -9.3547 28 1 -0.3634 0.0045 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5099 31 1 1.6583 2.1327 0.0008 32 1 4.1204 2.1326 -0.0094 33 1 5.3516 -0.0002 -0.0109 34 1 4.1205 -2.1323 -0.0012 35 1 1.7872 -4.5922 0.7778 36 1 3.3324 -3.6843 0.3427 37 1 -0.1232 -4.5726 -0.9830 38 1 1.7495 -6.5479 -3.0096 39 1 2.7035 -5.1032 -3.4231 40 1 1.7656 -5.1420 -5.7185 41 1 0.8118 -6.5866 -5.3044 42 1 2.9036 -7.8274 -4.8188 43 1 3.8566 -6.3823 -5.2332 44 1 5.5548 -9.1038 -7.0372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077400559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:15 Heat of formation + Delta-G solvation = -43.891641 kcal Electronic energy + Delta-G solvation = -24389.274832 eV Core-core repulsion = 20819.604074 eV Total energy + Delta-G solvation = -3569.670758 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.16389 -37.75344 -36.88405 -35.78662 -34.68691 -33.22236 -32.79835 -32.19902 -30.23740 -27.82610 -27.08440 -24.24642 -23.73914 -22.43445 -21.64561 -20.76849 -20.39758 -19.34128 -17.70727 -16.91185 -16.75288 -16.48664 -15.72553 -15.61024 -15.13809 -15.07866 -14.49567 -14.41796 -14.21695 -14.01650 -13.31130 -13.11553 -12.66656 -12.52865 -12.49532 -12.41654 -12.28641 -12.15919 -11.97780 -11.92439 -11.81757 -11.79651 -11.30367 -11.24279 -11.12057 -10.94392 -10.84995 -10.68403 -10.40330 -9.96768 -9.62172 -9.34766 -9.11639 -8.94741 -8.54043 -8.42029 -6.06814 -4.09692 0.39796 1.10413 1.18305 2.71956 3.28829 3.32650 3.36426 3.41410 3.74846 3.95195 4.23969 4.40965 4.42110 4.51621 4.55942 4.66225 4.69921 4.74423 4.82634 4.95692 5.08947 5.15591 5.22850 5.29995 5.33031 5.39219 5.41836 5.48705 5.63556 5.77537 5.83850 5.86014 5.94080 5.96553 6.24946 6.29100 6.31935 6.43269 6.44842 6.78027 6.80734 6.86032 7.56022 7.65604 7.91409 8.31805 8.96783 9.55135 11.04456 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.002630 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.147466 B =10644.953418 C =11454.225752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.076 4.076 3 C -0.119 4.119 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.118 4.118 7 C -0.051 4.051 8 C -0.124 4.124 9 H 0.119 0.881 10 C -0.181 4.181 11 C 0.102 3.898 12 H 0.139 0.861 13 N -1.094 6.094 14 S 2.599 3.401 15 O -0.957 6.957 16 O -0.961 6.961 17 C -0.606 4.606 18 C -0.106 4.106 19 C 0.031 3.969 20 C -0.525 4.525 21 H 0.059 0.941 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.894 3.106 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.415 0.585 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 16.194 19.303 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.137 4.137 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.136 4.136 7 C -0.052 4.052 8 C -0.144 4.144 9 H 0.137 0.863 10 C -0.220 4.220 11 C -0.006 4.006 12 H 0.156 0.844 13 N -0.847 5.847 14 S 2.695 3.305 15 O -0.947 6.947 16 O -0.952 6.952 17 C -0.738 4.738 18 C -0.146 4.146 19 C -0.008 4.008 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.144 4.144 23 N -0.534 5.534 24 Si 0.722 3.278 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.249 0.751 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.137 16.471 18.598 25.368 hybrid contribution 0.507 -0.756 -0.354 0.977 sum -4.630 15.714 18.244 24.520 Atomic orbital electron populations 1.20855 0.91260 1.03347 1.02144 1.19719 0.96111 0.92420 0.99393 1.21017 0.94309 0.97358 1.01042 1.21133 0.94305 0.98101 1.00408 1.21114 0.99918 0.92423 1.00548 1.21085 0.93535 0.98509 1.00439 1.18940 0.93041 0.92646 1.00540 1.21576 1.00410 0.88610 1.03831 0.86305 1.23678 1.00746 0.98112 0.99497 1.21487 0.90463 0.96373 0.92319 0.84373 1.55396 1.34476 1.66527 1.28343 1.05412 0.76858 0.75733 0.72447 1.93590 1.87338 1.40157 1.73622 1.93587 1.42816 1.73984 1.84798 1.30547 1.18972 1.15244 1.09075 1.21513 1.03613 1.01818 0.87650 1.19066 0.91097 0.93899 0.96721 1.21295 1.09260 1.30842 0.94987 0.92311 1.25023 0.95350 0.95931 0.98107 1.69969 1.12508 1.35338 1.35612 0.86500 0.78069 0.78234 0.85019 1.19594 1.20939 1.20937 0.91259 0.91475 0.90917 0.86113 0.86175 0.86006 0.85647 0.87602 0.87300 0.75089 0.85169 0.85462 0.91534 0.91538 0.96100 0.96098 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.33 36.01 0.34 -0.64 16 2 C -0.08 -0.74 5.88 -104.62 -0.62 -1.36 16 3 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 4 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 5 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 6 C -0.12 -1.09 9.30 -39.58 -0.37 -1.46 16 7 C -0.05 -0.51 5.61 -104.63 -0.59 -1.09 16 8 C -0.12 -1.09 5.07 -91.73 -0.47 -1.55 16 9 H 0.12 0.94 6.92 -51.93 -0.36 0.58 16 10 C -0.18 -1.36 9.79 -26.69 -0.26 -1.63 16 11 C 0.10 1.00 5.97 -67.92 -0.41 0.59 16 12 H 0.14 1.39 8.11 -51.93 -0.42 0.97 16 13 N -1.09 -11.34 5.93 -4.89 -0.03 -11.37 16 14 S 2.60 37.36 5.44 -107.50 -0.58 36.78 16 15 O -0.96 -16.78 17.81 -57.54 -1.03 -17.80 16 16 O -0.96 -16.56 18.08 -57.54 -1.04 -17.60 16 17 C -0.61 -9.11 6.07 37.15 0.23 -8.88 16 18 C -0.11 -2.14 5.16 -26.74 -0.14 -2.28 16 19 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 20 C -0.53 -14.76 9.11 -34.44 -0.31 -15.08 16 21 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 24 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.07 0.63 6.66 -51.93 -0.35 0.29 16 31 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.13 0.95 6.02 -52.49 -0.32 0.64 16 35 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 0.72 6.18 -51.93 -0.32 0.40 16 37 H 0.42 3.42 8.92 -34.47 -0.31 3.11 16 38 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 39 H 0.13 1.69 8.14 -51.93 -0.42 1.26 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -35.59 379.17 -11.94 -47.53 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.68 Total: 1.56 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: -4.01 Total: -35.59 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.71 Total: -37.12 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -2.07 Total: -35.41 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 37.36 SS G_CDS: -0.58 Total: 36.78 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.59 -11.94 -47.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077400559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.637 kcal (2) G-P(sol) polarization free energy of solvation -35.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds