Wall clock time and date at job start Tue Mar 31 2020 14:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38260 * 120.00075 * 2 1 4 4 C 1.38208 * 119.99730 * 180.26976 * 3 2 1 5 5 C 1.38258 * 120.00214 * 359.75293 * 4 3 2 6 6 C 1.38213 * 120.00022 * 359.97364 * 5 4 3 7 7 C 1.38217 * 119.99870 * 179.74647 * 2 1 3 8 8 C 1.50693 * 119.99955 * 359.97438 * 7 2 1 9 9 H 1.09003 * 115.56500 * 334.03520 * 8 7 2 10 10 C 1.53081 * 117.49430 * 188.32577 * 8 7 2 11 11 C 1.53006 * 59.98378 * 252.51478 * 10 8 7 12 12 H 1.08992 * 117.49636 * 107.49984 * 11 10 8 13 13 N 1.46500 * 117.49456 * 252.49662 * 11 10 8 14 14 S 1.65598 * 119.99523 * 213.74774 * 13 11 10 15 15 O 1.42101 * 104.28071 * 308.93108 * 14 13 11 16 16 O 1.42103 * 104.27787 * 181.07577 * 14 13 11 17 17 C 1.81403 * 104.45114 * 65.00132 * 14 13 11 18 18 C 1.52994 * 109.47158 * 179.97438 * 17 14 13 19 19 C 1.52996 * 109.47119 * 179.97438 * 18 17 14 20 20 C 1.50702 * 109.47159 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72211 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48496 * 109.47341 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46983 * 120.00379 * 24 22 20 27 27 H 1.48503 * 109.47491 * 240.00192 * 24 22 20 28 28 H 1.08996 * 109.47436 * 270.25280 * 1 2 3 29 29 H 1.08999 * 109.47187 * 30.25447 * 1 2 3 30 30 H 1.08996 * 109.47223 * 150.25058 * 1 2 3 31 31 H 1.07999 * 120.00011 * 0.04859 * 3 2 1 32 32 H 1.08005 * 120.00019 * 179.77017 * 4 3 2 33 33 H 1.08000 * 120.00255 * 179.97438 * 5 4 3 34 34 H 1.07998 * 120.00106 * 179.97438 * 6 5 4 35 35 H 1.09004 * 117.51133 * 145.03403 * 10 8 7 36 36 H 1.08994 * 117.48880 * 0.02562 * 10 8 7 37 37 H 0.96997 * 120.00089 * 33.75221 * 13 11 10 38 38 H 1.08998 * 109.46785 * 60.00241 * 17 14 13 39 39 H 1.08994 * 109.46954 * 300.00048 * 17 14 13 40 40 H 1.09004 * 109.46806 * 60.00263 * 18 17 14 41 41 H 1.09000 * 109.47828 * 300.00567 * 18 17 14 42 42 H 1.09004 * 109.47066 * 60.00422 * 19 18 17 43 43 H 1.08994 * 109.47405 * 300.00252 * 19 18 17 44 44 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0056 5 6 4.2717 -0.0001 -0.0061 6 6 3.5806 -1.1970 -0.0004 7 6 2.1981 -1.1970 0.0053 8 6 1.4446 -2.5020 0.0117 9 1 0.4439 -2.4653 0.4424 10 6 2.2548 -3.7849 0.2139 11 6 1.6736 -3.4558 -1.1626 12 1 2.3690 -3.1391 -1.9398 13 7 0.5313 -4.2498 -1.6220 14 16 0.3576 -4.5960 -3.2320 15 8 0.4768 -3.3351 -3.8765 16 8 -0.8492 -5.3431 -3.3016 17 6 1.7817 -5.6488 -3.6249 18 6 1.7336 -6.0409 -5.1029 19 6 2.9351 -6.9284 -5.4344 20 6 2.8881 -7.3142 -6.8904 21 1 2.0821 -6.9613 -7.5169 22 6 3.8774 -8.1125 -7.4244 23 7 4.8590 -8.5418 -6.6616 24 14 3.8233 -8.5844 -9.2309 25 1 2.6259 -7.9771 -9.8655 26 1 5.0477 -8.0881 -9.9091 27 1 3.7535 -10.0626 -9.3547 28 1 -0.3634 0.0045 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5099 31 1 1.6583 2.1327 0.0008 32 1 4.1204 2.1326 -0.0094 33 1 5.3516 -0.0002 -0.0109 34 1 4.1205 -2.1323 -0.0012 35 1 1.7872 -4.5922 0.7778 36 1 3.3324 -3.6843 0.3427 37 1 -0.1232 -4.5726 -0.9830 38 1 1.7495 -6.5479 -3.0096 39 1 2.7035 -5.1032 -3.4231 40 1 1.7656 -5.1420 -5.7185 41 1 0.8118 -6.5866 -5.3044 42 1 2.9036 -7.8274 -4.8188 43 1 3.8566 -6.3823 -5.2332 44 1 5.5548 -9.1038 -7.0372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077400559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:14 Heat of formation + Delta-G solvation = -66.583281 kcal Electronic energy + Delta-G solvation = -24390.258816 eV Core-core repulsion = 20819.604074 eV Total energy + Delta-G solvation = -3570.654741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.81655 -38.50208 -38.12563 -37.08521 -36.47018 -34.16691 -33.95098 -33.52510 -30.92023 -29.65920 -27.71348 -25.63141 -24.87882 -23.18268 -22.45934 -22.27993 -21.11358 -20.45673 -18.83372 -18.54997 -17.73980 -17.44300 -17.11789 -16.64437 -16.45241 -16.05117 -15.75097 -15.60691 -15.08515 -14.66040 -14.50942 -14.10508 -13.94667 -13.83881 -13.53026 -13.36919 -13.28526 -13.17947 -13.14633 -13.10766 -12.99286 -12.89811 -12.77603 -12.60812 -12.58270 -12.15232 -11.96061 -11.76251 -11.74147 -11.39609 -11.32735 -11.04096 -10.58069 -10.25633 -9.61635 -9.23673 -8.23097 -6.33758 -0.78734 0.43184 0.51904 1.39352 1.40241 1.53354 1.68909 2.39566 2.63303 2.74326 3.10592 3.14467 3.20702 3.64229 3.73024 3.80472 3.88878 3.93688 4.01640 4.05045 4.10483 4.23259 4.34079 4.39770 4.47313 4.65621 4.71073 4.79651 4.82273 4.89264 4.95509 5.02202 5.05966 5.16844 5.18883 5.26146 5.33785 5.45639 5.63126 5.63970 5.66969 5.78122 5.79537 6.04502 6.17023 6.19718 6.82033 7.35566 8.88567 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.002630 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.147466 B =10644.953418 C =11454.225752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.130 4.130 5 C -0.134 4.134 6 C -0.129 4.129 7 C -0.069 4.069 8 C -0.122 4.122 9 H 0.127 0.873 10 C -0.161 4.161 11 C 0.077 3.923 12 H 0.132 0.868 13 N -1.077 6.077 14 S 2.631 3.369 15 O -0.989 6.989 16 O -0.989 6.989 17 C -0.607 4.607 18 C -0.108 4.108 19 C 0.031 3.969 20 C -0.552 4.552 21 H 0.059 0.941 22 C 0.003 3.997 23 N -0.929 5.929 24 Si 0.962 3.038 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.276 1.276 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.428 0.572 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.004 0.996 43 H 0.004 0.996 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.747 16.596 20.069 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.147 4.147 7 C -0.069 4.069 8 C -0.143 4.143 9 H 0.145 0.855 10 C -0.200 4.200 11 C -0.031 4.031 12 H 0.150 0.850 13 N -0.835 5.835 14 S 2.727 3.273 15 O -0.979 6.979 16 O -0.980 6.980 17 C -0.738 4.738 18 C -0.147 4.147 19 C -0.007 4.007 20 C -0.590 4.590 21 H 0.078 0.922 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.787 3.213 25 H -0.188 1.188 26 H -0.202 1.202 27 H -0.202 1.202 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.265 0.735 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.229 16.870 19.369 26.212 hybrid contribution 0.570 -0.820 -0.507 1.120 sum -4.659 16.050 18.861 25.201 Atomic orbital electron populations 1.20866 0.90512 1.03157 1.02948 1.20023 0.96977 0.92830 0.99697 1.21294 0.94783 0.97877 1.00971 1.21444 0.94455 0.98977 0.99881 1.21418 1.00940 0.92468 1.00341 1.21343 0.93628 0.99361 1.00391 1.19165 0.93526 0.93149 1.01084 1.21616 1.01074 0.88669 1.02939 0.85524 1.23798 1.01440 0.97619 0.97136 1.21661 0.90520 0.97727 0.93233 0.84998 1.54884 1.35289 1.66388 1.26925 1.04213 0.75621 0.74523 0.72965 1.93550 1.87542 1.41557 1.75226 1.93543 1.44184 1.74515 1.85737 1.30501 1.20669 1.16708 1.05882 1.21325 1.01269 1.00835 0.91252 1.18960 0.92569 0.93904 0.95267 1.21773 1.09434 1.31098 0.96659 0.92247 1.25924 0.94946 0.95847 1.02821 1.70074 1.13212 1.35981 1.37655 0.85439 0.78388 0.78103 0.79395 1.18846 1.20222 1.20193 0.89941 0.91025 0.91705 0.84678 0.84352 0.84420 0.84370 0.85960 0.86208 0.73515 0.83306 0.83671 0.91614 0.91525 0.97775 0.97785 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.33 71.24 0.66 -1.15 16 2 C -0.10 -1.78 5.88 -19.86 -0.12 -1.89 16 3 C -0.13 -2.24 9.70 22.27 0.22 -2.03 16 4 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 5 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 6 C -0.13 -2.25 9.30 22.27 0.21 -2.04 16 7 C -0.07 -1.28 5.61 -19.87 -0.11 -1.39 16 8 C -0.12 -1.95 5.07 -11.51 -0.06 -2.01 16 9 H 0.13 1.77 6.92 -2.39 -0.02 1.75 16 10 C -0.16 -2.02 9.79 30.62 0.30 -1.72 16 11 C 0.08 1.37 5.97 45.00 0.27 1.64 16 12 H 0.13 2.53 8.11 -2.39 -0.02 2.51 16 13 N -1.08 -20.60 5.93 -169.38 -1.00 -21.60 16 14 S 2.63 73.46 5.44 -56.49 -0.31 73.15 16 15 O -0.99 -34.34 17.81 -127.65 -2.27 -36.61 16 16 O -0.99 -33.33 18.08 -127.65 -2.31 -35.64 16 17 C -0.61 -17.71 6.07 71.98 0.44 -17.27 16 18 C -0.11 -4.34 5.16 30.59 0.16 -4.18 16 19 C 0.03 1.60 4.97 29.85 0.15 1.75 16 20 C -0.55 -31.34 9.11 25.60 0.23 -31.11 16 21 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 22 C 0.00 0.16 5.46 84.66 0.46 0.62 16 23 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 24 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 25 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 30 H 0.06 1.08 6.66 -2.39 -0.02 1.06 16 31 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.14 1.88 6.02 -2.91 -0.02 1.86 16 35 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.12 1.26 6.18 -2.39 -0.01 1.25 16 37 H 0.43 6.16 8.92 -96.75 -0.86 5.30 16 38 H 0.15 3.77 8.14 -2.39 -0.02 3.75 16 39 H 0.15 3.69 8.14 -2.39 -0.02 3.67 16 40 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 41 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 43 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 Total: -1.00 -76.26 379.17 -0.19 -76.45 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.14 Total: 17.87 kcal Atomic # 6 Polarization: -67.88 SS G_CDS: 3.26 Total: -64.63 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -0.72 Total: -76.80 kcal Atomic # 8 Polarization: -67.67 SS G_CDS: -4.58 Total: -72.25 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 73.46 SS G_CDS: -0.31 Total: 73.15 kcal Total: -76.26 -0.19 -76.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077400559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.871 kcal (2) G-P(sol) polarization free energy of solvation -76.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds