Wall clock time and date at job start Tue Mar 31 2020 14:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38260 * 119.99776 * 2 1 4 4 C 1.38215 * 119.99902 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99967 * 0.02562 * 4 3 2 6 6 S 1.76204 * 119.99795 * 179.97438 * 5 4 3 7 7 O 1.42099 * 106.40034 * 1.49649 * 6 5 4 8 8 O 1.42098 * 106.39813 * 228.57758 * 6 5 4 9 9 N 1.65600 * 107.21641 * 115.03886 * 6 5 4 10 10 C 1.46490 * 119.99923 * 278.55198 * 9 6 5 11 11 C 1.50697 * 109.47696 * 265.00243 * 10 9 6 12 12 H 1.08004 * 119.99404 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00651 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99582 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00451 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46853 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47100 * 119.99851 * 15 13 11 18 18 H 1.48492 * 109.46870 * 240.00101 * 15 13 11 19 19 C 1.46503 * 119.99643 * 98.55851 * 9 6 5 20 20 C 1.53003 * 109.47029 * 96.32591 * 19 9 6 21 21 C 1.52997 * 117.49619 * 243.74247 * 20 19 9 22 22 C 1.52995 * 117.49648 * 175.08527 * 20 19 9 23 23 C 1.38216 * 120.00022 * 0.25604 * 5 4 3 24 24 C 1.50702 * 119.99886 * 179.72908 * 23 5 4 25 25 C 1.38214 * 119.99959 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47007 * 90.00540 * 1 2 3 27 27 H 1.09000 * 109.46685 * 209.99893 * 1 2 3 28 28 H 1.09000 * 109.47290 * 330.00020 * 1 2 3 29 29 H 1.08000 * 120.00251 * 359.97331 * 3 2 1 30 30 H 1.07997 * 120.00202 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.47594 * 25.00825 * 10 9 6 32 32 H 1.09005 * 109.47130 * 145.00567 * 10 9 6 33 33 H 0.97007 * 120.00139 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47465 * 336.32560 * 19 9 6 35 35 H 1.09000 * 109.46466 * 216.32346 * 19 9 6 36 36 H 1.08998 * 115.54990 * 29.41326 * 20 19 9 37 37 H 1.09003 * 117.50235 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.50068 * 145.02251 * 21 20 19 39 39 H 1.09008 * 117.49909 * 214.98009 * 22 20 19 40 40 H 1.09000 * 117.50150 * 359.97438 * 22 20 19 41 41 H 1.08992 * 109.46934 * 83.97992 * 24 23 5 42 42 H 1.09003 * 109.46843 * 203.97789 * 24 23 5 43 43 H 1.09001 * 109.47067 * 323.97740 * 24 23 5 44 44 H 1.07998 * 120.00384 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 16 6.0338 0.0002 0.0005 7 8 6.4349 1.3629 0.0361 8 8 6.4350 -0.9017 -1.0217 9 7 6.5240 -0.6693 1.4337 10 6 6.5605 0.1476 2.6491 11 6 7.9504 0.6963 2.8441 12 1 8.7287 0.4604 2.1334 13 6 8.2286 1.4994 3.9297 14 7 7.2808 1.7870 4.7948 15 14 9.9514 2.1801 4.1711 16 1 10.8271 1.7138 3.0661 17 1 9.9019 3.6643 4.1701 18 1 10.4945 1.7037 5.4684 19 6 6.9212 -2.0785 1.4859 20 6 8.4431 -2.1840 1.3697 21 6 9.0099 -2.9029 0.1439 22 6 9.0684 -3.5723 1.5192 23 6 3.5807 -1.1969 -0.0053 24 6 4.3343 -2.5020 -0.0115 25 6 2.1981 -1.1970 0.0005 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1327 0.0001 31 1 5.8543 0.9725 2.5539 32 1 6.2885 -0.4663 3.5078 33 1 7.4765 2.3518 5.5589 34 1 6.4556 -2.6181 0.6612 35 1 6.5981 -2.5121 2.4323 36 1 9.0043 -1.3346 1.7592 37 1 8.2985 -3.3004 -0.5801 38 1 9.9442 -2.5268 -0.2729 39 1 10.0413 -3.6363 2.0067 40 1 8.3956 -4.4104 1.7007 41 1 4.6091 -2.7676 1.0092 42 1 3.7028 -3.2841 -0.4330 43 1 5.2358 -2.3981 -0.6153 44 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078440993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:01 Heat of formation + Delta-G solvation = -23.388579 kcal Electronic energy + Delta-G solvation = -26441.283727 eV Core-core repulsion = 22872.502048 eV Total energy + Delta-G solvation = -3568.781679 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.44086 -37.57615 -36.63338 -35.16459 -34.78993 -33.63973 -32.37832 -31.97219 -28.01984 -27.43789 -26.80493 -25.43283 -22.53931 -22.20057 -21.85842 -21.17098 -20.14363 -18.40730 -17.39551 -16.88248 -16.38454 -15.91255 -15.16373 -15.03820 -14.75633 -14.35977 -14.24983 -14.11702 -13.81916 -13.44265 -13.28880 -13.20656 -12.76680 -12.50383 -12.37510 -12.22960 -12.03971 -11.79943 -11.60558 -11.44880 -11.18606 -11.13747 -11.10945 -11.03139 -11.00845 -10.75870 -10.55779 -10.19938 -10.13104 -9.80759 -9.48934 -9.36332 -8.97714 -8.69298 -8.42484 -8.08072 -6.04485 -4.07117 0.85672 1.13857 1.39896 3.32240 3.40090 3.42214 3.45809 3.77615 4.27869 4.37848 4.46964 4.59560 4.73882 4.84905 4.98224 5.20005 5.21409 5.26109 5.29066 5.35582 5.38502 5.44016 5.49796 5.60550 5.62706 5.70541 5.72290 5.84281 5.94656 5.98891 6.00617 6.16242 6.22975 6.25671 6.31800 6.39112 6.47687 6.49546 6.55119 6.95294 6.97022 7.23345 7.40254 7.59774 7.94246 8.21973 8.94877 9.57374 11.04402 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.005318 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.803414 B = 5264.033624 C = 6609.367058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.038 4.038 3 C -0.151 4.151 4 C -0.011 4.011 5 C -0.681 4.681 6 S 2.688 3.312 7 O -0.945 6.945 8 O -0.972 6.972 9 N -0.978 5.978 10 C 0.257 3.743 11 C -0.520 4.520 12 H 0.065 0.935 13 C 0.062 3.938 14 N -0.897 5.897 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.285 1.285 19 C 0.153 3.847 20 C -0.165 4.165 21 C -0.183 4.183 22 C -0.183 4.183 23 C 0.024 3.976 24 C -0.179 4.179 25 C -0.149 4.149 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.128 0.872 30 H 0.143 0.857 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.111 0.889 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 -8.685 -8.238 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.038 4.038 3 C -0.170 4.170 4 C -0.031 4.031 5 C -0.765 4.765 6 S 2.777 3.223 7 O -0.935 6.935 8 O -0.962 6.962 9 N -0.817 5.817 10 C 0.135 3.865 11 C -0.559 4.559 12 H 0.083 0.917 13 C -0.140 4.140 14 N -0.536 5.536 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.211 1.211 19 C 0.027 3.973 20 C -0.185 4.185 21 C -0.220 4.220 22 C -0.221 4.221 23 C 0.023 3.977 24 C -0.235 4.235 25 C -0.168 4.168 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.146 0.854 30 H 0.161 0.839 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.785 -8.264 -8.717 15.493 hybrid contribution 0.141 0.437 0.676 0.817 sum -9.645 -7.827 -8.040 14.796 Atomic orbital electron populations 1.20888 0.90948 1.03184 1.02563 1.20151 0.96095 0.93354 0.94204 1.21115 0.94202 0.97744 1.03941 1.21009 0.94542 0.97053 0.90451 1.31229 1.28699 0.98643 1.17931 1.02147 0.73409 0.73687 0.73089 1.93580 1.80013 1.33886 1.86032 1.93447 1.81319 1.65360 1.56113 1.57355 1.78347 1.19026 1.26981 1.19100 0.97795 0.89158 0.80402 1.21536 0.95745 1.29807 1.08828 0.91666 1.24915 0.97304 0.95992 0.95799 1.69929 1.32407 1.37719 1.13575 0.86504 0.84478 0.78969 0.77888 1.19614 1.20891 1.21078 1.20997 0.92408 0.81751 1.02138 1.23136 0.97049 0.96603 1.01700 1.23021 1.02972 1.04808 0.91161 1.22877 1.02293 0.96286 1.00594 1.19473 0.93966 0.93501 0.90775 1.21918 1.02948 0.94178 1.04481 1.20979 0.93495 0.97696 1.04639 0.90741 0.91223 0.91097 0.85376 0.83891 0.94707 0.94469 0.92821 0.90232 0.90478 0.85338 0.88728 0.89463 0.89269 0.89313 0.89225 0.90282 0.87087 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.04 -0.47 5.88 -104.62 -0.62 -1.09 16 3 C -0.15 -2.08 9.70 -39.58 -0.38 -2.46 16 4 C -0.01 -0.19 9.55 -39.58 -0.38 -0.57 16 5 C -0.68 -11.94 5.91 -39.58 -0.23 -12.17 16 6 S 2.69 54.17 4.99 -107.50 -0.54 53.63 16 7 O -0.94 -22.52 16.26 -57.17 -0.93 -23.45 16 8 O -0.97 -19.31 14.33 -57.17 -0.82 -20.13 16 9 N -0.98 -19.82 2.76 -115.67 -0.32 -20.14 16 10 C 0.26 6.27 5.12 -5.20 -0.03 6.24 16 11 C -0.52 -14.08 8.62 -34.44 -0.30 -14.37 16 12 H 0.07 1.76 6.16 -52.48 -0.32 1.44 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C 0.15 2.61 4.40 -4.04 -0.02 2.59 16 20 C -0.17 -2.89 5.89 -90.62 -0.53 -3.43 16 21 C -0.18 -2.79 10.18 -26.70 -0.27 -3.06 16 22 C -0.18 -2.58 10.25 -26.70 -0.27 -2.85 16 23 C 0.02 0.36 5.87 -104.62 -0.61 -0.25 16 24 C -0.18 -2.33 7.90 36.01 0.28 -2.04 16 25 C -0.15 -1.95 9.33 -39.58 -0.37 -2.32 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.14 2.36 7.33 -52.49 -0.38 1.98 16 31 H 0.04 0.91 7.84 -51.93 -0.41 0.50 16 32 H 0.04 0.92 8.02 -51.93 -0.42 0.50 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 34 H 0.08 1.17 3.89 -51.93 -0.20 0.97 16 35 H 0.08 1.21 8.02 -51.93 -0.42 0.80 16 36 H 0.13 2.64 5.68 -51.93 -0.30 2.35 16 37 H 0.09 1.37 8.03 -51.93 -0.42 0.95 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.08 6.56 -51.93 -0.34 0.74 16 42 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 43 H 0.11 1.60 4.03 -51.93 -0.21 1.39 16 44 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -32.29 363.36 -11.22 -43.51 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.34 Total: 4.43 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: -3.47 Total: -34.83 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.42 Total: -45.22 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -1.75 Total: -43.59 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 54.17 SS G_CDS: -0.54 Total: 53.63 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.29 -11.22 -43.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078440993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.120 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds