Wall clock time and date at job start Tue Mar 31 2020 14:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38260 * 119.99776 * 2 1 4 4 C 1.38215 * 119.99902 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99967 * 0.02562 * 4 3 2 6 6 S 1.76204 * 119.99795 * 179.97438 * 5 4 3 7 7 O 1.42099 * 106.40034 * 1.49649 * 6 5 4 8 8 O 1.42098 * 106.39813 * 228.57758 * 6 5 4 9 9 N 1.65600 * 107.21641 * 115.03886 * 6 5 4 10 10 C 1.46490 * 119.99923 * 278.55198 * 9 6 5 11 11 C 1.50697 * 109.47696 * 265.00243 * 10 9 6 12 12 H 1.08004 * 119.99404 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00651 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99582 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00451 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.46853 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47100 * 119.99851 * 15 13 11 18 18 H 1.48492 * 109.46870 * 240.00101 * 15 13 11 19 19 C 1.46503 * 119.99643 * 98.55851 * 9 6 5 20 20 C 1.53003 * 109.47029 * 96.32591 * 19 9 6 21 21 C 1.52997 * 117.49619 * 243.74247 * 20 19 9 22 22 C 1.52995 * 117.49648 * 175.08527 * 20 19 9 23 23 C 1.38216 * 120.00022 * 0.25604 * 5 4 3 24 24 C 1.50702 * 119.99886 * 179.72908 * 23 5 4 25 25 C 1.38214 * 119.99959 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47007 * 90.00540 * 1 2 3 27 27 H 1.09000 * 109.46685 * 209.99893 * 1 2 3 28 28 H 1.09000 * 109.47290 * 330.00020 * 1 2 3 29 29 H 1.08000 * 120.00251 * 359.97331 * 3 2 1 30 30 H 1.07997 * 120.00202 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.47594 * 25.00825 * 10 9 6 32 32 H 1.09005 * 109.47130 * 145.00567 * 10 9 6 33 33 H 0.97007 * 120.00139 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.47465 * 336.32560 * 19 9 6 35 35 H 1.09000 * 109.46466 * 216.32346 * 19 9 6 36 36 H 1.08998 * 115.54990 * 29.41326 * 20 19 9 37 37 H 1.09003 * 117.50235 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.50068 * 145.02251 * 21 20 19 39 39 H 1.09008 * 117.49909 * 214.98009 * 22 20 19 40 40 H 1.09000 * 117.50150 * 359.97438 * 22 20 19 41 41 H 1.08992 * 109.46934 * 83.97992 * 24 23 5 42 42 H 1.09003 * 109.46843 * 203.97789 * 24 23 5 43 43 H 1.09001 * 109.47067 * 323.97740 * 24 23 5 44 44 H 1.07998 * 120.00384 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 16 6.0338 0.0002 0.0005 7 8 6.4349 1.3629 0.0361 8 8 6.4350 -0.9017 -1.0217 9 7 6.5240 -0.6693 1.4337 10 6 6.5605 0.1476 2.6491 11 6 7.9504 0.6963 2.8441 12 1 8.7287 0.4604 2.1334 13 6 8.2286 1.4994 3.9297 14 7 7.2808 1.7870 4.7948 15 14 9.9514 2.1801 4.1711 16 1 10.8271 1.7138 3.0661 17 1 9.9019 3.6643 4.1701 18 1 10.4945 1.7037 5.4684 19 6 6.9212 -2.0785 1.4859 20 6 8.4431 -2.1840 1.3697 21 6 9.0099 -2.9029 0.1439 22 6 9.0684 -3.5723 1.5192 23 6 3.5807 -1.1969 -0.0053 24 6 4.3343 -2.5020 -0.0115 25 6 2.1981 -1.1970 0.0005 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1327 0.0001 31 1 5.8543 0.9725 2.5539 32 1 6.2885 -0.4663 3.5078 33 1 7.4765 2.3518 5.5589 34 1 6.4556 -2.6181 0.6612 35 1 6.5981 -2.5121 2.4323 36 1 9.0043 -1.3346 1.7592 37 1 8.2985 -3.3004 -0.5801 38 1 9.9442 -2.5268 -0.2729 39 1 10.0413 -3.6363 2.0067 40 1 8.3956 -4.4104 1.7007 41 1 4.6091 -2.7676 1.0092 42 1 3.7028 -3.2841 -0.4330 43 1 5.2358 -2.3981 -0.6153 44 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078440993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:00 Heat of formation + Delta-G solvation = -42.692758 kcal Electronic energy + Delta-G solvation = -26442.120819 eV Core-core repulsion = 22872.502048 eV Total energy + Delta-G solvation = -3569.618771 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52454 -38.96361 -38.26034 -36.83601 -36.38442 -34.72907 -34.31346 -33.09169 -29.71957 -28.38560 -27.99811 -27.02485 -24.35294 -23.40934 -23.06647 -22.26807 -21.51406 -19.85762 -18.90256 -18.64265 -18.12711 -17.36317 -16.70411 -16.25934 -16.04914 -16.02026 -15.46098 -15.25788 -15.04462 -14.97587 -14.44628 -14.27373 -14.15167 -14.01930 -13.79228 -13.35193 -13.18764 -13.15365 -13.03324 -12.96574 -12.90013 -12.65587 -12.59995 -12.55101 -12.38712 -12.23927 -12.11450 -11.94428 -11.48604 -11.45330 -11.12373 -10.64059 -10.56096 -10.07511 -9.82646 -9.73505 -8.17691 -6.26470 -0.54046 -0.17051 0.29299 1.37161 1.40127 1.51074 2.05363 2.41811 2.48800 2.84989 3.04921 3.14393 3.41574 3.67162 3.81485 3.83858 3.94936 4.03204 4.17999 4.25897 4.31763 4.39180 4.48257 4.50487 4.62946 4.65189 4.69654 4.82356 4.85432 4.89287 4.95946 5.02705 5.08651 5.11999 5.15231 5.21324 5.25847 5.31236 5.37403 5.41744 5.46703 5.61648 5.73898 5.91891 5.96443 6.14207 6.81271 7.40876 8.90726 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.005318 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.803414 B = 5264.033624 C = 6609.367058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.030 4.030 3 C -0.156 4.156 4 C -0.041 4.041 5 C -0.700 4.700 6 S 2.691 3.309 7 O -0.998 6.998 8 O -0.976 6.976 9 N -0.980 5.980 10 C 0.274 3.726 11 C -0.530 4.530 12 H 0.057 0.943 13 C 0.012 3.988 14 N -0.927 5.927 15 Si 0.950 3.050 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.271 1.271 19 C 0.148 3.852 20 C -0.202 4.202 21 C -0.181 4.181 22 C -0.154 4.154 23 C 0.014 3.986 24 C -0.183 4.183 25 C -0.149 4.149 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.153 0.847 30 H 0.126 0.874 31 H 0.009 0.991 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.203 -11.105 -8.610 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.031 4.031 3 C -0.175 4.175 4 C -0.061 4.061 5 C -0.789 4.789 6 S 2.785 3.215 7 O -0.988 6.988 8 O -0.966 6.966 9 N -0.818 5.818 10 C 0.151 3.849 11 C -0.569 4.569 12 H 0.076 0.924 13 C -0.186 4.186 14 N -0.568 5.568 15 Si 0.776 3.224 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.196 1.196 19 C 0.023 3.977 20 C -0.222 4.222 21 C -0.218 4.218 22 C -0.192 4.192 23 C 0.012 3.988 24 C -0.239 4.239 25 C -0.167 4.167 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.171 0.829 30 H 0.144 0.856 31 H 0.027 0.973 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.135 0.865 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.112 0.888 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.693 -10.704 -9.098 18.278 hybrid contribution 0.617 1.154 0.721 1.494 sum -11.076 -9.550 -8.377 16.854 Atomic orbital electron populations 1.20997 0.87602 1.04641 1.04122 1.20699 0.98439 0.92493 0.91419 1.21447 0.92932 0.99859 1.03260 1.21091 0.96236 0.96310 0.92428 1.30673 1.26160 1.00445 1.21659 1.01600 0.74572 0.72446 0.72853 1.93505 1.81953 1.36679 1.86680 1.93430 1.82366 1.64894 1.55932 1.57166 1.79298 1.20030 1.25315 1.18627 0.95792 0.88766 0.81758 1.21844 0.96823 1.29732 1.08534 0.92448 1.25667 1.00821 0.96415 0.95741 1.70018 1.34086 1.38533 1.14136 0.85626 0.80426 0.78163 0.78233 1.19513 1.20791 1.19631 1.21287 0.92466 0.80084 1.03840 1.23007 0.97106 0.97567 1.04494 1.23097 1.02911 1.04310 0.91516 1.22998 1.02603 0.94676 0.98898 1.19837 0.95344 0.93216 0.90365 1.21990 1.02769 0.94169 1.04971 1.21454 0.92593 0.99587 1.03110 0.88863 0.89402 0.90114 0.82914 0.85607 0.97285 0.95079 0.92577 0.87645 0.89269 0.89182 0.87676 0.89611 0.88584 0.86535 0.88360 0.86705 0.88797 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 10.01 71.24 0.71 -0.78 16 2 C -0.03 -0.66 5.88 -19.86 -0.12 -0.78 16 3 C -0.16 -4.13 9.70 22.27 0.22 -3.92 16 4 C -0.04 -1.42 9.55 22.27 0.21 -1.21 16 5 C -0.70 -25.13 5.91 22.27 0.13 -25.00 16 6 S 2.69 113.95 4.99 -56.49 -0.28 113.67 16 7 O -1.00 -51.31 16.26 -128.00 -2.08 -53.40 16 8 O -0.98 -39.81 14.33 -128.00 -1.83 -41.65 16 9 N -0.98 -41.32 2.76 -519.86 -1.43 -42.76 16 10 C 0.27 14.06 5.12 85.63 0.44 14.50 16 11 C -0.53 -30.02 8.62 25.60 0.22 -29.80 16 12 H 0.06 3.28 6.16 -2.91 -0.02 3.26 16 13 C 0.01 0.71 5.46 84.65 0.46 1.17 16 14 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 15 Si 0.95 45.41 29.54 68.60 2.03 47.43 16 16 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 C 0.15 5.03 4.40 86.38 0.38 5.41 16 20 C -0.20 -7.12 5.89 -10.80 -0.06 -7.19 16 21 C -0.18 -5.38 10.18 30.62 0.31 -5.07 16 22 C -0.15 -4.06 10.25 30.62 0.31 -3.75 16 23 C 0.01 0.40 5.87 -19.86 -0.12 0.28 16 24 C -0.18 -4.32 7.90 71.24 0.56 -3.76 16 25 C -0.15 -3.37 9.33 22.27 0.21 -3.17 16 26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 28 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 29 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.13 4.60 7.33 -2.91 -0.02 4.57 16 31 H 0.01 0.51 7.84 -2.39 -0.02 0.49 16 32 H 0.03 1.61 8.02 -2.38 -0.02 1.59 16 33 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 34 H 0.11 2.99 3.89 -2.39 -0.01 2.98 16 35 H 0.09 2.75 8.02 -2.39 -0.02 2.73 16 36 H 0.09 3.90 5.68 -2.39 -0.01 3.88 16 37 H 0.10 2.88 8.03 -2.39 -0.02 2.86 16 38 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.10 2.13 6.56 -2.39 -0.02 2.12 16 42 H 0.11 1.84 8.05 -2.39 -0.02 1.82 16 43 H 0.09 2.57 4.03 -2.39 -0.01 2.56 16 44 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -73.88 363.36 1.56 -72.32 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 1.00 Total: 22.06 kcal Atomic # 6 Polarization: -66.93 SS G_CDS: 3.87 Total: -63.06 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -1.15 Total: -97.38 kcal Atomic # 8 Polarization: -91.13 SS G_CDS: -3.92 Total: -95.05 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 113.95 SS G_CDS: -0.28 Total: 113.67 kcal Total: -73.88 1.56 -72.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078440993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.630 kcal (2) G-P(sol) polarization free energy of solvation -73.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds