Wall clock time and date at job start Tue Mar 31 2020 14:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00280 * 2 1 4 4 O 1.20830 * 119.99818 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00382 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47471 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99923 * 262.85686 * 6 5 3 8 8 H 1.07995 * 119.99992 * 142.29521 * 7 6 5 9 9 C 1.38820 * 119.99781 * 322.28761 * 7 6 5 10 10 N 1.31620 * 119.99697 * 156.56401 * 9 7 6 11 11 Si 1.86800 * 119.99878 * 336.56365 * 9 7 6 12 12 H 1.48498 * 109.46911 * 95.21182 * 11 9 7 13 13 H 1.48499 * 109.46834 * 215.21156 * 11 9 7 14 14 H 1.48499 * 109.47133 * 335.21180 * 11 9 7 15 15 C 1.46496 * 119.99890 * 82.84839 * 6 5 3 16 16 C 1.53000 * 109.47036 * 90.00560 * 15 6 5 17 17 S 1.81398 * 109.47084 * 179.97438 * 16 15 6 18 18 C 1.76208 * 102.99733 * 179.97438 * 17 16 15 19 19 C 1.38987 * 120.08028 * 0.02562 * 18 17 16 20 20 C 1.38059 * 119.91898 * 180.29895 * 19 18 17 21 21 C 1.38330 * 120.07683 * 359.43833 * 20 19 18 22 22 C 1.50708 * 119.91767 * 180.25526 * 21 20 19 23 23 C 1.38277 * 120.16139 * 0.56129 * 21 20 19 24 24 C 1.50705 * 119.95874 * 179.69993 * 23 21 20 25 25 C 1.38104 * 120.07908 * 359.72093 * 23 21 20 26 26 H 1.08990 * 109.47267 * 59.99625 * 1 2 3 27 27 H 1.09001 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46489 * 299.99398 * 1 2 3 29 29 H 1.09003 * 109.46593 * 60.00016 * 5 3 2 30 30 H 1.09002 * 109.47342 * 300.00334 * 5 3 2 31 31 H 0.97004 * 119.99258 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.47317 * 330.00404 * 15 6 5 33 33 H 1.09001 * 109.47399 * 210.00302 * 15 6 5 34 34 H 1.09000 * 109.47195 * 59.99770 * 16 15 6 35 35 H 1.09001 * 109.46816 * 300.00100 * 16 15 6 36 36 H 1.07998 * 120.04080 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.96365 * 179.69906 * 20 19 18 38 38 H 1.08997 * 109.47186 * 270.30439 * 22 21 20 39 39 H 1.09005 * 109.46557 * 30.30395 * 22 21 20 40 40 H 1.09002 * 109.46720 * 150.30272 * 22 21 20 41 41 H 1.09000 * 109.46704 * 270.01901 * 24 23 21 42 42 H 1.08997 * 109.46843 * 30.01863 * 24 23 21 43 43 H 1.08993 * 109.46813 * 150.02442 * 24 23 21 44 44 H 1.08002 * 120.03753 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.3169 3.2952 -1.1763 8 1 4.0425 4.3262 -1.3436 9 6 5.0094 2.5939 -2.1539 10 7 4.9391 2.9751 -3.4117 11 14 6.0411 1.1091 -1.6841 12 1 5.2415 -0.1282 -1.8706 13 1 7.2488 1.0528 -2.5463 14 1 6.4531 1.2226 -0.2619 15 6 4.0386 3.4260 1.2594 16 6 5.4310 3.2800 1.8765 17 16 5.5015 4.2048 3.4355 18 6 7.1504 3.9229 3.9892 19 6 8.0142 3.1382 3.2343 20 6 9.3035 2.9144 3.6744 21 6 9.7395 3.4797 4.8593 22 6 11.1495 3.2377 5.3334 23 6 8.8829 4.2609 5.6129 24 6 9.3607 4.8689 6.9064 25 6 7.5901 4.4843 5.1818 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 3.9557 0.7809 -0.8909 30 1 3.9565 0.7805 0.8891 31 1 5.4233 2.4852 -4.0947 32 1 3.2923 3.0320 1.9493 33 1 3.8352 4.4795 1.0670 34 1 6.1773 3.6740 1.1866 35 1 5.6344 2.2265 2.0690 36 1 7.6759 2.7004 2.3068 37 1 9.9738 2.3008 3.0908 38 1 11.1749 2.3438 5.9565 39 1 11.8035 3.0993 4.4724 40 1 11.4897 4.0952 5.9140 41 1 9.1617 4.1797 7.7271 42 1 10.4319 5.0602 6.8441 43 1 8.8338 5.8065 7.0835 44 1 6.9215 5.0943 5.7711 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080871856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:03 Heat of formation + Delta-G solvation = -43.690565 kcal Electronic energy + Delta-G solvation = -24531.452707 eV Core-core repulsion = 20961.790668 eV Total energy + Delta-G solvation = -3569.662039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.70922 -39.45020 -36.65914 -35.36555 -33.52726 -32.29304 -32.11803 -30.56829 -28.25121 -27.69159 -26.65977 -26.27412 -24.22196 -22.21804 -21.30928 -21.01011 -20.10879 -17.41481 -17.09167 -16.90686 -16.15522 -15.85612 -15.68329 -15.54404 -15.08801 -14.82779 -14.47640 -14.15048 -13.96049 -13.38598 -13.15847 -13.08283 -12.96961 -12.86543 -12.77972 -12.66549 -12.38841 -12.10335 -12.03046 -11.91666 -11.63640 -11.46328 -11.16863 -10.90016 -10.80681 -10.50951 -10.41001 -10.26863 -9.95019 -9.85438 -9.72978 -9.35621 -8.76736 -8.76141 -7.24711 -7.15146 -6.23127 -3.67517 1.21783 1.35969 1.75679 2.72173 2.96219 3.11430 3.26982 3.30667 3.34007 3.63419 4.27478 4.68669 4.75238 4.77379 4.93758 5.00348 5.08993 5.22785 5.33131 5.37418 5.39633 5.40335 5.45130 5.49050 5.50552 5.61816 5.65768 5.67848 5.69628 5.77014 5.88252 5.96715 5.99866 6.05192 6.06143 6.31134 6.34016 6.36421 6.58701 6.62143 6.93233 6.98100 7.71999 8.15419 8.47027 8.71336 9.41769 9.75719 10.91079 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.003293 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.331189 B = 8500.896889 C = 9467.024894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.376 6.376 3 C 0.428 3.572 4 O -0.494 6.494 5 C 0.139 3.861 6 N -0.563 5.563 7 C -0.278 4.278 8 H 0.087 0.913 9 C 0.043 3.957 10 N -0.881 5.881 11 Si 0.861 3.139 12 H -0.279 1.279 13 H -0.292 1.292 14 H -0.263 1.263 15 C 0.169 3.831 16 C -0.118 4.118 17 S -0.135 6.135 18 C -0.073 4.073 19 C -0.134 4.134 20 C -0.097 4.097 21 C -0.102 4.102 22 C -0.113 4.113 23 C -0.074 4.074 24 C -0.115 4.115 25 C -0.102 4.102 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.268 0.732 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 -2.860 16.945 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.293 6.293 3 C 0.267 3.733 4 O -0.379 6.379 5 C 0.009 3.991 6 N -0.283 5.283 7 C -0.407 4.407 8 H 0.104 0.896 9 C -0.160 4.160 10 N -0.519 5.519 11 Si 0.689 3.311 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.187 1.187 15 C 0.042 3.958 16 C -0.269 4.269 17 S 0.110 5.890 18 C -0.186 4.186 19 C -0.158 4.158 20 C -0.117 4.117 21 C -0.105 4.105 22 C -0.170 4.170 23 C -0.075 4.075 24 C -0.172 4.172 25 C -0.127 4.127 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.175 -1.886 17.155 18.018 hybrid contribution 1.334 -1.631 -0.721 2.227 sum 6.509 -3.517 16.435 18.023 Atomic orbital electron populations 1.23081 0.78444 1.02499 1.01968 1.86606 1.22144 1.35627 1.84909 1.26347 0.94091 0.80888 0.71930 1.90578 1.66771 1.36386 1.44208 1.21304 0.85391 0.89135 1.03232 1.43860 1.72625 1.07973 1.03814 1.18851 1.31719 0.99176 0.90908 0.89566 1.25527 0.97392 0.97924 0.95149 1.69887 1.41118 1.41322 0.99599 0.87154 0.81448 0.83155 0.79350 1.20606 1.21902 1.18739 1.20677 0.90399 0.98106 0.86647 1.24759 1.06550 1.01391 0.94182 1.85353 1.09635 1.66494 1.27555 1.21811 0.97877 1.00832 0.98064 1.21287 0.94269 0.99949 1.00282 1.20917 0.95509 0.99344 0.95899 1.19715 0.96259 0.99032 0.95469 1.20819 0.92655 1.02014 1.01493 1.19619 0.93278 0.97942 0.96702 1.20844 1.01668 1.00478 0.94163 1.20591 0.95515 1.01201 0.95343 0.92415 0.89117 0.92646 0.88128 0.90012 0.92185 0.92853 0.91087 0.88726 0.90375 0.85515 0.85956 0.91411 0.91752 0.91300 0.91189 0.91148 0.91581 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 101.05 1.07 1.56 16 2 O -0.38 -6.82 10.57 -39.24 -0.41 -7.24 16 3 C 0.43 9.00 8.01 36.00 0.29 9.28 16 4 O -0.49 -11.69 16.10 -18.75 -0.30 -11.99 16 5 C 0.14 2.90 4.86 -5.19 -0.03 2.87 16 6 N -0.56 -12.81 1.59 -174.61 -0.28 -13.09 16 7 C -0.28 -7.43 9.90 -15.06 -0.15 -7.58 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.04 1.17 5.23 -17.43 -0.09 1.07 16 10 N -0.88 -25.66 13.97 55.49 0.78 -24.89 16 11 Si 0.86 19.96 25.15 -169.99 -4.28 15.68 16 12 H -0.28 -6.24 6.67 56.52 0.38 -5.86 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 15 C 0.17 3.30 5.59 -4.04 -0.02 3.28 16 16 C -0.12 -2.07 4.66 37.16 0.17 -1.89 16 17 S -0.13 -2.13 21.92 -107.50 -2.36 -4.48 16 18 C -0.07 -1.09 6.11 -39.04 -0.24 -1.33 16 19 C -0.13 -1.99 9.36 -39.37 -0.37 -2.36 16 20 C -0.10 -1.25 9.69 -39.61 -0.38 -1.63 16 21 C -0.10 -1.18 5.88 -104.57 -0.62 -1.80 16 22 C -0.11 -0.95 9.60 36.01 0.35 -0.60 16 23 C -0.07 -0.85 5.88 -104.65 -0.62 -1.47 16 24 C -0.11 -0.95 9.60 36.01 0.35 -0.60 16 25 C -0.10 -1.35 9.45 -39.37 -0.37 -1.72 16 26 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.10 2.24 3.76 -51.93 -0.20 2.04 16 30 H 0.08 1.44 8.12 -51.93 -0.42 1.01 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 34 H 0.09 1.79 7.75 -51.92 -0.40 1.39 16 35 H 0.08 1.33 7.75 -51.92 -0.40 0.92 16 36 H 0.13 1.96 5.88 -52.49 -0.31 1.65 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 40 H 0.07 0.49 5.94 -51.93 -0.31 0.18 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.49 5.94 -51.93 -0.31 0.18 16 43 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 44 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -30.86 375.14 -8.42 -39.28 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.56 Total: 4.00 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.66 Total: -2.93 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.50 Total: -37.97 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.72 Total: -19.23 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.28 Total: 15.68 kcal Atomic # 16 Polarization: -2.13 SS G_CDS: -2.36 Total: -4.48 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.86 -8.42 -39.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080871856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.411 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds