Wall clock time and date at job start Tue Mar 31 2020 14:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00280 * 2 1 4 4 O 1.20830 * 119.99818 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00382 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47471 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99923 * 262.85686 * 6 5 3 8 8 H 1.07995 * 119.99992 * 142.29521 * 7 6 5 9 9 C 1.38820 * 119.99781 * 322.28761 * 7 6 5 10 10 N 1.31620 * 119.99697 * 156.56401 * 9 7 6 11 11 Si 1.86800 * 119.99878 * 336.56365 * 9 7 6 12 12 H 1.48498 * 109.46911 * 95.21182 * 11 9 7 13 13 H 1.48499 * 109.46834 * 215.21156 * 11 9 7 14 14 H 1.48499 * 109.47133 * 335.21180 * 11 9 7 15 15 C 1.46496 * 119.99890 * 82.84839 * 6 5 3 16 16 C 1.53000 * 109.47036 * 90.00560 * 15 6 5 17 17 S 1.81398 * 109.47084 * 179.97438 * 16 15 6 18 18 C 1.76208 * 102.99733 * 179.97438 * 17 16 15 19 19 C 1.38987 * 120.08028 * 0.02562 * 18 17 16 20 20 C 1.38059 * 119.91898 * 180.29895 * 19 18 17 21 21 C 1.38330 * 120.07683 * 359.43833 * 20 19 18 22 22 C 1.50708 * 119.91767 * 180.25526 * 21 20 19 23 23 C 1.38277 * 120.16139 * 0.56129 * 21 20 19 24 24 C 1.50705 * 119.95874 * 179.69993 * 23 21 20 25 25 C 1.38104 * 120.07908 * 359.72093 * 23 21 20 26 26 H 1.08990 * 109.47267 * 59.99625 * 1 2 3 27 27 H 1.09001 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46489 * 299.99398 * 1 2 3 29 29 H 1.09003 * 109.46593 * 60.00016 * 5 3 2 30 30 H 1.09002 * 109.47342 * 300.00334 * 5 3 2 31 31 H 0.97004 * 119.99258 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.47317 * 330.00404 * 15 6 5 33 33 H 1.09001 * 109.47399 * 210.00302 * 15 6 5 34 34 H 1.09000 * 109.47195 * 59.99770 * 16 15 6 35 35 H 1.09001 * 109.46816 * 300.00100 * 16 15 6 36 36 H 1.07998 * 120.04080 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.96365 * 179.69906 * 20 19 18 38 38 H 1.08997 * 109.47186 * 270.30439 * 22 21 20 39 39 H 1.09005 * 109.46557 * 30.30395 * 22 21 20 40 40 H 1.09002 * 109.46720 * 150.30272 * 22 21 20 41 41 H 1.09000 * 109.46704 * 270.01901 * 24 23 21 42 42 H 1.08997 * 109.46843 * 30.01863 * 24 23 21 43 43 H 1.08993 * 109.46813 * 150.02442 * 24 23 21 44 44 H 1.08002 * 120.03753 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.3169 3.2952 -1.1763 8 1 4.0425 4.3262 -1.3436 9 6 5.0094 2.5939 -2.1539 10 7 4.9391 2.9751 -3.4117 11 14 6.0411 1.1091 -1.6841 12 1 5.2415 -0.1282 -1.8706 13 1 7.2488 1.0528 -2.5463 14 1 6.4531 1.2226 -0.2619 15 6 4.0386 3.4260 1.2594 16 6 5.4310 3.2800 1.8765 17 16 5.5015 4.2048 3.4355 18 6 7.1504 3.9229 3.9892 19 6 8.0142 3.1382 3.2343 20 6 9.3035 2.9144 3.6744 21 6 9.7395 3.4797 4.8593 22 6 11.1495 3.2377 5.3334 23 6 8.8829 4.2609 5.6129 24 6 9.3607 4.8689 6.9064 25 6 7.5901 4.4843 5.1818 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 3.9557 0.7809 -0.8909 30 1 3.9565 0.7805 0.8891 31 1 5.4233 2.4852 -4.0947 32 1 3.2923 3.0320 1.9493 33 1 3.8352 4.4795 1.0670 34 1 6.1773 3.6740 1.1866 35 1 5.6344 2.2265 2.0690 36 1 7.6759 2.7004 2.3068 37 1 9.9738 2.3008 3.0908 38 1 11.1749 2.3438 5.9565 39 1 11.8035 3.0993 4.4724 40 1 11.4897 4.0952 5.9140 41 1 9.1617 4.1797 7.7271 42 1 10.4319 5.0602 6.8441 43 1 8.8338 5.8065 7.0835 44 1 6.9215 5.0943 5.7711 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080871856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:02 Heat of formation + Delta-G solvation = -59.368164 kcal Electronic energy + Delta-G solvation = -24532.132538 eV Core-core repulsion = 20961.790668 eV Total energy + Delta-G solvation = -3570.341870 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31949 -40.38619 -38.32670 -37.03201 -34.46530 -34.15398 -33.08012 -32.17982 -29.81029 -28.49957 -27.79208 -27.53877 -25.88872 -23.35606 -22.77516 -21.96742 -21.77222 -19.25481 -18.68726 -18.10588 -17.76114 -17.21218 -16.94828 -16.83802 -16.61376 -16.13198 -15.72494 -15.26558 -15.16562 -14.86694 -14.60636 -14.42417 -14.18680 -14.16466 -13.89081 -13.62960 -13.56218 -13.39688 -13.15701 -13.03677 -12.90957 -12.69693 -12.64260 -12.24795 -12.12861 -12.05799 -11.82867 -11.76394 -11.71741 -11.47456 -11.18296 -10.74894 -10.37268 -9.71793 -9.12255 -8.33557 -8.31166 -5.76562 0.22059 0.37454 0.50676 1.27036 1.29576 1.40115 1.46315 1.51245 1.84715 2.32500 2.66000 2.92431 3.19399 3.81813 3.89692 3.92510 3.97289 4.04173 4.13785 4.20974 4.28253 4.33125 4.34114 4.35143 4.37474 4.48402 4.56237 4.68417 4.73564 4.75575 4.79761 4.84954 4.96764 4.99717 5.05378 5.19270 5.29218 5.32958 5.42937 5.43796 5.69105 5.76590 6.02114 6.07788 6.65098 6.94123 7.39273 7.77430 8.87546 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.003293 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.331189 B = 8500.896889 C = 9467.024894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.372 6.372 3 C 0.432 3.568 4 O -0.530 6.530 5 C 0.133 3.867 6 N -0.575 5.575 7 C -0.275 4.275 8 H 0.037 0.963 9 C -0.009 4.009 10 N -0.936 5.936 11 Si 0.928 3.072 12 H -0.260 1.260 13 H -0.300 1.300 14 H -0.238 1.238 15 C 0.174 3.826 16 C -0.106 4.106 17 S -0.133 6.133 18 C -0.094 4.094 19 C -0.154 4.154 20 C -0.106 4.106 21 C -0.101 4.101 22 C -0.112 4.112 23 C -0.075 4.075 24 C -0.114 4.114 25 C -0.111 4.111 26 H 0.048 0.952 27 H 0.135 0.865 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.269 0.731 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.050 -4.941 20.118 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.273 3.727 4 O -0.418 6.418 5 C 0.004 3.996 6 N -0.296 5.296 7 C -0.405 4.405 8 H 0.055 0.945 9 C -0.208 4.208 10 N -0.577 5.577 11 Si 0.753 3.247 12 H -0.186 1.186 13 H -0.228 1.228 14 H -0.161 1.161 15 C 0.047 3.953 16 C -0.256 4.256 17 S 0.110 5.890 18 C -0.207 4.207 19 C -0.178 4.178 20 C -0.126 4.126 21 C -0.103 4.103 22 C -0.169 4.169 23 C -0.077 4.077 24 C -0.170 4.170 25 C -0.135 4.135 26 H 0.067 0.933 27 H 0.153 0.847 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.141 0.859 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.156 0.844 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.859 -3.998 20.373 21.866 hybrid contribution 0.739 -0.931 -1.592 1.987 sum 7.597 -4.929 18.781 20.851 Atomic orbital electron populations 1.23463 0.75884 1.05394 1.01888 1.86554 1.24496 1.33647 1.84151 1.26171 0.94272 0.81135 0.71117 1.90572 1.67545 1.37697 1.46019 1.21413 0.85578 0.87963 1.04606 1.43817 1.73496 1.08775 1.03477 1.18571 1.31625 0.97626 0.92663 0.94527 1.26165 0.98300 1.01768 0.94544 1.70026 1.42779 1.43957 1.00950 0.86083 0.78971 0.79646 0.80043 1.18622 1.22774 1.16123 1.20586 0.92092 0.96776 0.85812 1.24338 1.04192 1.02179 0.94936 1.85199 1.11249 1.66612 1.25916 1.21856 0.97120 1.02483 0.99272 1.21306 0.95413 1.00833 1.00204 1.21188 0.94962 0.99696 0.96754 1.20162 0.97858 0.97680 0.94609 1.20901 0.90436 1.03329 1.02204 1.20052 0.92490 0.97299 0.97862 1.20926 1.02712 1.00813 0.92547 1.20825 0.96618 1.01180 0.94836 0.93332 0.84720 0.92019 0.89132 0.85879 0.92205 0.91503 0.93003 0.90672 0.89363 0.86798 0.84379 0.90053 0.91056 0.89650 0.89831 0.89451 0.90939 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.37 -12.75 10.57 -51.36 -0.54 -13.29 16 3 C 0.43 17.80 8.01 71.24 0.57 18.38 16 4 O -0.53 -25.30 16.10 21.95 0.35 -24.94 16 5 C 0.13 5.38 4.86 85.63 0.42 5.80 16 6 N -0.58 -26.54 1.59 -706.34 -1.12 -27.66 16 7 C -0.28 -15.43 9.90 84.04 0.83 -14.60 16 8 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16 9 C -0.01 -0.52 5.23 84.86 0.44 -0.08 16 10 N -0.94 -57.00 13.97 21.65 0.30 -56.69 16 11 Si 0.93 41.40 25.15 68.60 1.73 43.12 16 12 H -0.26 -10.78 6.67 99.48 0.66 -10.11 16 13 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 14 H -0.24 -9.58 7.11 99.48 0.71 -8.87 16 15 C 0.17 6.92 5.59 86.38 0.48 7.40 16 16 C -0.11 -3.72 4.66 71.98 0.34 -3.38 16 17 S -0.13 -4.19 21.92 -56.49 -1.24 -5.43 16 18 C -0.09 -2.78 6.11 22.62 0.14 -2.64 16 19 C -0.15 -4.47 9.36 22.41 0.21 -4.26 16 20 C -0.11 -2.56 9.69 22.25 0.22 -2.34 16 21 C -0.10 -2.05 5.88 -19.83 -0.12 -2.17 16 22 C -0.11 -1.45 9.60 71.24 0.68 -0.77 16 23 C -0.08 -1.55 5.88 -19.89 -0.12 -1.66 16 24 C -0.11 -1.47 9.60 71.24 0.68 -0.78 16 25 C -0.11 -2.76 9.45 22.41 0.21 -2.55 16 26 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 27 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 29 H 0.09 3.88 3.76 -2.39 -0.01 3.87 16 30 H 0.12 3.94 8.12 -2.39 -0.02 3.92 16 31 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 33 H 0.05 2.22 8.04 -2.39 -0.02 2.20 16 34 H 0.07 2.92 7.75 -2.39 -0.02 2.90 16 35 H 0.09 2.89 7.75 -2.39 -0.02 2.87 16 36 H 0.11 3.52 5.88 -2.91 -0.02 3.50 16 37 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.85 8.09 -2.38 -0.02 0.83 16 40 H 0.08 0.84 5.94 -2.39 -0.01 0.83 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 0.85 5.94 -2.39 -0.01 0.83 16 43 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 44 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -70.69 375.14 6.62 -64.07 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.95 Total: 22.59 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 6.19 Total: -1.76 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -0.82 Total: -84.36 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.19 Total: -38.24 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.73 Total: 43.12 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -1.24 Total: -5.43 kcal Total: -70.69 6.62 -64.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080871856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.701 kcal (2) G-P(sol) polarization free energy of solvation -70.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds