Wall clock time and date at job start Tue Mar 31 2020 14:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21295 * 119.99681 * 2 1 4 4 C 1.46835 * 120.00109 * 179.97438 * 2 1 3 5 5 C 1.40083 * 120.09883 * 353.78290 * 4 2 1 6 6 C 1.36577 * 119.89958 * 180.25701 * 5 4 2 7 7 C 1.39267 * 120.09877 * 359.46555 * 6 5 4 8 8 N 1.39219 * 119.89887 * 180.28333 * 7 6 5 9 9 C 1.34776 * 119.99749 * 216.10448 * 8 7 6 10 10 O 1.21553 * 120.00267 * 355.02617 * 9 8 7 11 11 C 1.47846 * 120.00087 * 175.03300 * 9 8 7 12 12 C 1.39935 * 120.02529 * 359.71693 * 11 9 8 13 13 C 1.38327 * 120.35518 * 179.76890 * 12 11 9 14 14 C 1.37760 * 120.40964 * 0.51238 * 13 12 11 15 15 C 1.40745 * 120.04989 * 359.74959 * 14 13 12 16 16 C 1.41435 * 120.18066 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99912 * 327.51743 * 16 15 14 18 18 C 1.39932 * 120.00086 * 147.52009 * 16 15 14 19 19 N 1.30824 * 120.00593 * 359.84757 * 18 16 15 20 20 Si 1.86804 * 120.00124 * 179.85236 * 18 16 15 21 21 H 1.48507 * 109.46997 * 59.99512 * 20 18 16 22 22 H 1.48489 * 109.47502 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46915 * 300.00030 * 20 18 16 24 24 C 1.39015 * 120.02517 * 179.97438 * 11 9 8 25 25 C 1.39214 * 120.19608 * 0.51544 * 7 6 5 26 26 C 1.36620 * 120.10392 * 359.76466 * 25 7 6 27 27 C 1.50697 * 120.05388 * 179.97438 * 26 25 7 28 28 H 1.08999 * 109.47128 * 240.00243 * 1 2 3 29 29 H 1.09003 * 109.47288 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47012 * 120.00225 * 1 2 3 31 31 H 1.08001 * 120.04892 * 359.97438 * 5 4 2 32 32 H 1.08000 * 119.94899 * 179.70061 * 6 5 4 33 33 H 0.96994 * 120.00410 * 36.10223 * 8 7 6 34 34 H 1.08001 * 119.82268 * 0.02640 * 12 11 9 35 35 H 1.07999 * 119.79883 * 180.26374 * 13 12 11 36 36 H 1.08002 * 119.97601 * 179.76331 * 14 13 12 37 37 H 0.97002 * 120.00587 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.20619 * 359.95052 * 24 11 9 39 39 H 1.07999 * 119.95402 * 179.75015 * 25 7 6 40 40 H 1.08994 * 109.47164 * 262.95512 * 27 26 25 41 41 H 1.09000 * 109.46749 * 22.95657 * 27 26 25 42 42 H 1.09001 * 109.47152 * 142.95680 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 6 2.2412 -1.2716 0.0006 5 6 1.5491 -2.4824 0.1324 6 6 2.2366 -3.6625 0.1377 7 6 3.6225 -3.6640 0.0011 8 7 4.3185 -4.8697 0.0011 9 6 5.5343 -4.9459 0.5779 10 8 6.0623 -3.9433 1.0177 11 6 6.2258 -6.2491 0.6755 12 6 5.6159 -7.4046 0.1746 13 6 6.2588 -8.6266 0.2581 14 6 7.5017 -8.7220 0.8444 15 6 8.1285 -7.5716 1.3588 16 6 9.4048 -7.6663 1.9609 17 1 9.6833 -8.5607 2.4984 18 6 10.3068 -6.6012 1.8601 19 7 9.9707 -5.5189 1.2065 20 14 11.9909 -6.7246 2.6588 21 1 12.7295 -7.8762 2.0811 22 1 12.7507 -5.4737 2.4080 23 1 11.8315 -6.9226 4.1219 24 6 7.4800 -6.3282 1.2698 25 6 4.3144 -2.4632 -0.1305 26 6 3.6355 -1.2776 -0.1312 27 6 4.3857 0.0216 -0.2732 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 0.4739 -2.4824 0.2342 32 1 1.7042 -4.5961 0.2441 33 1 3.9286 -5.6549 -0.4138 34 1 4.6399 -7.3414 -0.2833 35 1 5.7816 -9.5120 -0.1353 36 1 7.9956 -9.6803 0.9093 37 1 10.5958 -4.7804 1.1369 38 1 7.9530 -5.4395 1.6608 39 1 5.3896 -2.4687 -0.2321 40 1 4.5538 0.4538 0.7132 41 1 5.3447 -0.1636 -0.7570 42 1 3.8011 0.7144 -0.8785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089410132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:41 Heat of formation + Delta-G solvation = -29.407235 kcal Electronic energy + Delta-G solvation = -25611.827143 eV Core-core repulsion = 21907.340524 eV Total energy + Delta-G solvation = -3704.486618 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.67257 -39.61819 -38.06996 -37.05710 -34.72433 -33.74614 -32.84441 -31.30501 -30.24186 -29.56364 -28.73497 -26.95605 -25.46205 -24.26057 -22.34660 -21.57584 -21.02201 -20.01272 -19.67301 -17.97335 -17.14886 -16.72764 -16.19450 -15.73460 -15.30958 -15.18231 -14.79879 -14.70350 -14.25044 -14.07178 -13.86875 -13.40489 -13.34449 -13.16400 -12.95010 -12.71287 -12.65187 -12.42024 -12.34485 -12.13323 -11.90732 -11.75503 -11.20019 -11.19392 -11.16430 -10.85394 -10.56416 -10.19485 -10.05800 -9.84669 -9.59256 -9.37281 -9.19279 -8.80750 -8.12149 -7.75465 -7.54540 -6.74977 -4.54221 0.60576 1.41148 1.95626 2.38280 2.73306 3.04785 3.06686 3.07943 3.31879 3.56274 3.84455 3.89604 4.02671 4.58768 4.66999 4.77479 4.91820 5.13721 5.16918 5.23331 5.29837 5.44230 5.48274 5.51418 5.69223 5.79899 5.84206 5.90150 5.99294 6.10656 6.12812 6.19588 6.35997 6.50702 6.58253 6.64175 6.83190 6.89624 7.04818 7.15544 7.25377 7.49198 7.52515 7.56300 7.74652 7.89741 8.08185 8.41023 8.58844 8.72840 8.76109 10.16117 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.002780 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.798310 B =10067.848689 C =11375.252272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.395 3.605 3 O -0.462 6.462 4 C -0.212 4.212 5 C -0.047 4.047 6 C -0.176 4.176 7 C 0.203 3.797 8 N -0.679 5.679 9 C 0.564 3.436 10 O -0.517 6.517 11 C -0.137 4.137 12 C -0.208 4.208 13 C -0.103 4.103 14 C -0.198 4.198 15 C 0.094 3.906 16 C -0.460 4.460 17 H 0.080 0.920 18 C 0.068 3.932 19 N -0.800 5.800 20 Si 0.918 3.082 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.077 4.077 25 C -0.144 4.144 26 C -0.001 4.001 27 C -0.120 4.120 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.413 0.587 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.284 0.716 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.491 4.748 -3.743 16.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.275 3.725 3 O -0.339 6.339 4 C -0.214 4.214 5 C -0.066 4.066 6 C -0.196 4.196 7 C 0.106 3.894 8 N -0.324 5.324 9 C 0.357 3.643 10 O -0.392 6.392 11 C -0.140 4.140 12 C -0.228 4.228 13 C -0.121 4.121 14 C -0.218 4.218 15 C 0.091 3.909 16 C -0.490 4.490 17 H 0.098 0.902 18 C -0.149 4.149 19 N -0.426 5.426 20 Si 0.743 3.257 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.097 4.097 25 C -0.164 4.164 26 C -0.002 4.002 27 C -0.176 4.176 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.250 0.750 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.618 6.181 -3.465 16.245 hybrid contribution 0.455 -0.779 0.045 0.903 sum -14.163 5.402 -3.420 15.539 Atomic orbital electron populations 1.22241 0.94262 1.04770 1.04325 1.22305 0.91347 0.87742 0.71126 1.90500 1.71595 1.34660 1.37147 1.20213 0.93967 0.94691 1.12488 1.20854 0.99519 0.90914 0.95314 1.20640 0.92612 0.99107 1.07258 1.18127 0.91074 0.86564 0.93666 1.43641 1.19697 1.11072 1.57966 1.19084 0.79261 0.90297 0.75674 1.90726 1.64535 1.37261 1.46702 1.19395 0.97295 0.90264 1.07061 1.20393 0.99701 0.92804 1.09924 1.20461 0.95605 0.95782 1.00292 1.21260 0.96975 0.98557 1.04996 1.17654 0.92515 0.90581 0.90117 1.19535 0.97621 1.01466 1.30376 0.90197 1.25947 1.01087 0.94227 0.93602 1.69692 1.36595 1.04568 1.31698 0.86200 0.80730 0.78522 0.80291 1.18996 1.20232 1.18873 1.21931 0.90519 1.00114 0.97183 1.21083 1.01967 0.90300 1.03087 1.19854 0.92244 0.95759 0.92331 1.21074 0.99354 0.93985 1.03213 0.89035 0.90011 0.89068 0.85038 0.85186 0.74960 0.89118 0.88601 0.88319 0.90484 0.83758 0.83483 0.90535 0.92007 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.37 9.01 36.01 0.32 -1.05 16 2 C 0.39 4.47 7.15 -30.83 -0.22 4.25 16 3 O -0.46 -6.55 14.07 5.54 0.08 -6.47 16 4 C -0.21 -2.63 5.87 -105.05 -0.62 -3.25 16 5 C -0.05 -0.49 9.41 -39.49 -0.37 -0.86 16 6 C -0.18 -2.04 9.90 -39.80 -0.39 -2.44 16 7 C 0.20 3.05 6.28 -83.76 -0.53 2.53 16 8 N -0.68 -10.79 5.25 -10.70 -0.06 -10.84 16 9 C 0.56 11.65 7.61 -12.33 -0.09 11.56 16 10 O -0.52 -12.19 13.77 5.32 0.07 -12.11 16 11 C -0.14 -3.04 5.87 -105.04 -0.62 -3.66 16 12 C -0.21 -4.06 9.54 -38.91 -0.37 -4.43 16 13 C -0.10 -2.06 10.01 -39.72 -0.40 -2.46 16 14 C -0.20 -4.47 9.78 -38.81 -0.38 -4.85 16 15 C 0.09 2.39 5.55 -106.87 -0.59 1.79 16 16 C -0.46 -11.74 9.06 -37.73 -0.34 -12.09 16 17 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 18 C 0.07 1.69 5.39 -17.35 -0.09 1.60 16 19 N -0.80 -20.76 10.60 55.55 0.59 -20.17 16 20 Si 0.92 18.57 29.56 -169.99 -5.02 13.54 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 C -0.08 -1.98 8.21 -38.43 -0.32 -2.29 16 25 C -0.14 -2.36 8.23 -39.80 -0.33 -2.69 16 26 C 0.00 -0.01 5.89 -104.53 -0.62 -0.63 16 27 C -0.12 -1.66 8.70 36.00 0.31 -1.35 16 28 H 0.09 0.48 7.89 -51.93 -0.41 0.07 16 29 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.13 0.87 6.97 -52.49 -0.37 0.50 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.41 5.34 6.85 -40.82 -0.28 5.06 16 34 H 0.09 1.41 6.39 -52.49 -0.34 1.07 16 35 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 38 H 0.14 4.03 5.69 -52.49 -0.30 3.73 16 39 H 0.15 2.75 6.23 -52.49 -0.33 2.42 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.81 8.02 -51.93 -0.42 0.40 16 42 H 0.09 1.20 5.89 -51.93 -0.31 0.90 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -29.86 354.70 -9.45 -39.31 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -4.82 Total: 11.69 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -5.64 Total: -20.30 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.53 Total: -31.01 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.15 Total: -18.59 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.86 -9.45 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089410132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.906 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds