Wall clock time and date at job start Tue Mar 31 2020 14:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21295 * 119.99681 * 2 1 4 4 C 1.46835 * 120.00109 * 179.97438 * 2 1 3 5 5 C 1.40083 * 120.09883 * 353.78290 * 4 2 1 6 6 C 1.36577 * 119.89958 * 180.25701 * 5 4 2 7 7 C 1.39267 * 120.09877 * 359.46555 * 6 5 4 8 8 N 1.39219 * 119.89887 * 180.28333 * 7 6 5 9 9 C 1.34776 * 119.99749 * 216.10448 * 8 7 6 10 10 O 1.21553 * 120.00267 * 355.02617 * 9 8 7 11 11 C 1.47846 * 120.00087 * 175.03300 * 9 8 7 12 12 C 1.39935 * 120.02529 * 359.71693 * 11 9 8 13 13 C 1.38327 * 120.35518 * 179.76890 * 12 11 9 14 14 C 1.37760 * 120.40964 * 0.51238 * 13 12 11 15 15 C 1.40745 * 120.04989 * 359.74959 * 14 13 12 16 16 C 1.41435 * 120.18066 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99912 * 327.51743 * 16 15 14 18 18 C 1.39932 * 120.00086 * 147.52009 * 16 15 14 19 19 N 1.30824 * 120.00593 * 359.84757 * 18 16 15 20 20 Si 1.86804 * 120.00124 * 179.85236 * 18 16 15 21 21 H 1.48507 * 109.46997 * 59.99512 * 20 18 16 22 22 H 1.48489 * 109.47502 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46915 * 300.00030 * 20 18 16 24 24 C 1.39015 * 120.02517 * 179.97438 * 11 9 8 25 25 C 1.39214 * 120.19608 * 0.51544 * 7 6 5 26 26 C 1.36620 * 120.10392 * 359.76466 * 25 7 6 27 27 C 1.50697 * 120.05388 * 179.97438 * 26 25 7 28 28 H 1.08999 * 109.47128 * 240.00243 * 1 2 3 29 29 H 1.09003 * 109.47288 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47012 * 120.00225 * 1 2 3 31 31 H 1.08001 * 120.04892 * 359.97438 * 5 4 2 32 32 H 1.08000 * 119.94899 * 179.70061 * 6 5 4 33 33 H 0.96994 * 120.00410 * 36.10223 * 8 7 6 34 34 H 1.08001 * 119.82268 * 0.02640 * 12 11 9 35 35 H 1.07999 * 119.79883 * 180.26374 * 13 12 11 36 36 H 1.08002 * 119.97601 * 179.76331 * 14 13 12 37 37 H 0.97002 * 120.00587 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.20619 * 359.95052 * 24 11 9 39 39 H 1.07999 * 119.95402 * 179.75015 * 25 7 6 40 40 H 1.08994 * 109.47164 * 262.95512 * 27 26 25 41 41 H 1.09000 * 109.46749 * 22.95657 * 27 26 25 42 42 H 1.09001 * 109.47152 * 142.95680 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 6 2.2412 -1.2716 0.0006 5 6 1.5491 -2.4824 0.1324 6 6 2.2366 -3.6625 0.1377 7 6 3.6225 -3.6640 0.0011 8 7 4.3185 -4.8697 0.0011 9 6 5.5343 -4.9459 0.5779 10 8 6.0623 -3.9433 1.0177 11 6 6.2258 -6.2491 0.6755 12 6 5.6159 -7.4046 0.1746 13 6 6.2588 -8.6266 0.2581 14 6 7.5017 -8.7220 0.8444 15 6 8.1285 -7.5716 1.3588 16 6 9.4048 -7.6663 1.9609 17 1 9.6833 -8.5607 2.4984 18 6 10.3068 -6.6012 1.8601 19 7 9.9707 -5.5189 1.2065 20 14 11.9909 -6.7246 2.6588 21 1 12.7295 -7.8762 2.0811 22 1 12.7507 -5.4737 2.4080 23 1 11.8315 -6.9226 4.1219 24 6 7.4800 -6.3282 1.2698 25 6 4.3144 -2.4632 -0.1305 26 6 3.6355 -1.2776 -0.1312 27 6 4.3857 0.0216 -0.2732 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 0.4739 -2.4824 0.2342 32 1 1.7042 -4.5961 0.2441 33 1 3.9286 -5.6549 -0.4138 34 1 4.6399 -7.3414 -0.2833 35 1 5.7816 -9.5120 -0.1353 36 1 7.9956 -9.6803 0.9093 37 1 10.5958 -4.7804 1.1369 38 1 7.9530 -5.4395 1.6608 39 1 5.3896 -2.4687 -0.2321 40 1 4.5538 0.4538 0.7132 41 1 5.3447 -0.1636 -0.7570 42 1 3.8011 0.7144 -0.8785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089410132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:40 Heat of formation + Delta-G solvation = -45.929020 kcal Electronic energy + Delta-G solvation = -25612.543581 eV Core-core repulsion = 21907.340524 eV Total energy + Delta-G solvation = -3705.203057 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90516 -40.83519 -39.37951 -38.61258 -36.13018 -35.50956 -33.84437 -32.63246 -31.54333 -31.29084 -29.77867 -27.99679 -27.26204 -25.59107 -23.68640 -22.88868 -22.56388 -21.34402 -20.85993 -19.61415 -18.50551 -17.73545 -17.68046 -17.04074 -16.82484 -16.47202 -16.12915 -16.01365 -15.72717 -15.20564 -15.09938 -14.91019 -14.55567 -14.45579 -14.34447 -14.15345 -13.83149 -13.60714 -13.38255 -13.14369 -12.99135 -12.88020 -12.82405 -12.79152 -12.56445 -12.22800 -12.22303 -11.91459 -11.57842 -11.37858 -11.15827 -10.89005 -10.43905 -9.87756 -9.60916 -9.33408 -9.18498 -8.56148 -6.45583 -0.44605 0.29944 0.39873 0.99488 1.35704 1.38416 1.46616 1.48489 1.96598 2.02480 2.19486 2.73593 2.82356 3.20998 3.61401 3.66331 3.82168 3.91410 4.17893 4.22339 4.35321 4.36726 4.47236 4.54991 4.62835 4.66732 4.73622 4.76871 4.82040 4.88195 5.05347 5.10301 5.11503 5.14852 5.24353 5.30450 5.32290 5.37039 5.48735 5.57695 5.81074 5.85639 5.92582 6.05931 6.25394 6.37939 6.59330 6.63964 6.88004 6.92282 7.09498 8.35765 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.002780 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.798310 B =10067.848689 C =11375.252272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.392 3.608 3 O -0.500 6.500 4 C -0.213 4.213 5 C -0.028 4.028 6 C -0.159 4.159 7 C 0.175 3.825 8 N -0.656 5.656 9 C 0.562 3.438 10 O -0.560 6.560 11 C -0.146 4.146 12 C -0.181 4.181 13 C -0.102 4.102 14 C -0.200 4.200 15 C 0.059 3.941 16 C -0.497 4.497 17 H 0.083 0.917 18 C 0.022 3.978 19 N -0.843 5.843 20 Si 0.987 3.013 21 H -0.254 1.254 22 H -0.276 1.276 23 H -0.259 1.259 24 C -0.117 4.117 25 C -0.169 4.169 26 C -0.025 4.025 27 C -0.115 4.115 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.186 0.814 32 H 0.170 0.830 33 H 0.429 0.571 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.282 0.718 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.234 2.849 -4.525 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.275 3.725 3 O -0.379 6.379 4 C -0.215 4.215 5 C -0.046 4.046 6 C -0.179 4.179 7 C 0.079 3.921 8 N -0.302 5.302 9 C 0.354 3.646 10 O -0.439 6.439 11 C -0.149 4.149 12 C -0.201 4.201 13 C -0.120 4.120 14 C -0.219 4.219 15 C 0.057 3.943 16 C -0.528 4.528 17 H 0.101 0.899 18 C -0.190 4.190 19 N -0.470 5.470 20 Si 0.808 3.192 21 H -0.178 1.178 22 H -0.201 1.201 23 H -0.183 1.183 24 C -0.138 4.138 25 C -0.189 4.189 26 C -0.026 4.026 27 C -0.171 4.171 28 H 0.136 0.864 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.204 0.796 32 H 0.188 0.812 33 H 0.270 0.730 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.130 0.870 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.425 4.250 -4.275 20.338 hybrid contribution 1.633 -0.180 0.191 1.654 sum -17.791 4.070 -4.083 18.702 Atomic orbital electron populations 1.22272 0.89806 1.05874 1.06763 1.22976 0.93587 0.86449 0.69536 1.90499 1.72873 1.35716 1.38856 1.20623 0.92931 0.96819 1.11122 1.21417 1.01893 0.89030 0.92286 1.21059 0.90578 1.01408 1.04819 1.18367 0.92669 0.85268 0.95796 1.43229 1.17964 1.12216 1.56832 1.18954 0.80570 0.89198 0.75914 1.90719 1.65995 1.38373 1.48797 1.19664 0.96520 0.92282 1.06476 1.20973 1.01077 0.91294 1.06746 1.20982 0.94477 0.97671 0.98827 1.21571 0.98082 0.98010 1.04276 1.17996 0.93171 0.91653 0.91506 1.19814 0.98610 1.02246 1.32097 0.89887 1.26841 1.04784 0.93574 0.93802 1.69853 1.37780 1.05433 1.33934 0.85162 0.76020 0.78655 0.79342 1.17844 1.20057 1.18331 1.21695 0.92603 0.99241 1.00266 1.20876 1.00413 0.92214 1.05424 1.19966 0.93940 0.94943 0.93752 1.20997 0.99209 0.94279 1.02634 0.86356 0.89884 0.86287 0.79647 0.81241 0.73013 0.83841 0.83795 0.87000 0.90744 0.87573 0.87465 0.91484 0.92750 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 9.01 71.24 0.64 -1.05 16 2 C 0.39 7.92 7.15 27.94 0.20 8.12 16 3 O -0.50 -13.95 14.07 -3.08 -0.04 -13.99 16 4 C -0.21 -4.82 5.87 -20.14 -0.12 -4.94 16 5 C -0.03 -0.43 9.41 22.33 0.21 -0.22 16 6 C -0.16 -2.97 9.90 22.13 0.22 -2.75 16 7 C 0.17 5.05 6.28 38.45 0.24 5.29 16 8 N -0.66 -19.96 5.25 -306.05 -1.61 -21.57 16 9 C 0.56 23.90 7.61 86.79 0.66 24.56 16 10 O -0.56 -28.64 13.77 -3.88 -0.05 -28.69 16 11 C -0.15 -6.60 5.87 -20.14 -0.12 -6.72 16 12 C -0.18 -6.52 9.54 22.70 0.22 -6.30 16 13 C -0.10 -3.72 10.01 22.18 0.22 -3.49 16 14 C -0.20 -8.89 9.78 22.77 0.22 -8.66 16 15 C 0.06 3.13 5.55 -21.32 -0.12 3.01 16 16 C -0.50 -26.82 9.06 23.47 0.21 -26.61 16 17 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 18 C 0.02 1.16 5.39 85.25 0.46 1.62 16 19 N -0.84 -47.48 10.60 21.82 0.23 -47.25 16 20 Si 0.99 40.05 29.56 68.60 2.03 42.07 16 21 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 23 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 24 C -0.12 -6.39 8.21 23.01 0.19 -6.20 16 25 C -0.17 -5.82 8.23 22.13 0.18 -5.64 16 26 C -0.03 -0.76 5.89 -19.80 -0.12 -0.87 16 27 C -0.12 -3.46 8.70 71.24 0.62 -2.84 16 28 H 0.12 0.49 7.89 -2.39 -0.02 0.47 16 29 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 30 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.19 0.93 6.97 -2.91 -0.02 0.91 16 32 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.43 9.50 6.85 -92.71 -0.64 8.87 16 34 H 0.14 3.60 6.39 -2.91 -0.02 3.58 16 35 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 37 H 0.28 14.86 8.30 -92.71 -0.77 14.09 16 38 H 0.11 6.55 5.69 -2.91 -0.02 6.53 16 39 H 0.11 4.51 6.23 -2.91 -0.02 4.49 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.05 1.63 8.02 -2.39 -0.02 1.61 16 42 H 0.09 2.64 5.89 -2.39 -0.01 2.63 16 Total: -1.00 -75.89 354.70 5.02 -70.87 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.44 Total: 32.25 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 4.03 Total: -33.69 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -1.37 Total: -68.82 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.10 Total: -42.68 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.07 kcal Total: -75.89 5.02 -70.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089410132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.941 kcal (2) G-P(sol) polarization free energy of solvation -75.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds