Wall clock time and date at job start Tue Mar 31 2020 14:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21294 * 119.99972 * 2 1 4 4 C 1.46835 * 119.99624 * 180.02562 * 2 1 3 5 5 C 1.40081 * 120.10191 * 354.29061 * 4 2 1 6 6 C 1.36574 * 119.90221 * 180.02562 * 5 4 2 7 7 C 1.39275 * 120.09704 * 0.02562 * 6 5 4 8 8 N 1.39184 * 119.90025 * 179.97438 * 7 6 5 9 9 C 1.34780 * 120.00179 * 33.64469 * 8 7 6 10 10 O 1.21593 * 119.99398 * 5.94740 * 9 8 7 11 11 C 1.47579 * 120.00194 * 185.94264 * 9 8 7 12 12 C 1.40038 * 119.89493 * 179.97438 * 11 9 8 13 13 C 1.36302 * 120.10045 * 179.74852 * 12 11 9 14 14 C 1.40892 * 119.89901 * 0.25752 * 13 12 11 15 15 C 1.41085 * 120.10700 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99712 * 25.99143 * 15 14 13 17 17 C 1.40232 * 120.00213 * 205.98924 * 15 14 13 18 18 N 1.30636 * 120.00171 * 18.15607 * 17 15 14 19 19 Si 1.86800 * 119.99982 * 198.15704 * 17 15 14 20 20 H 1.48499 * 109.47407 * 90.00304 * 19 17 15 21 21 H 1.48501 * 109.47389 * 209.99969 * 19 17 15 22 22 H 1.48501 * 109.47293 * 330.00037 * 19 17 15 23 23 C 1.40906 * 119.79496 * 359.97438 * 14 13 12 24 24 C 1.36301 * 119.89064 * 0.02562 * 23 14 13 25 25 C 1.39233 * 120.19749 * 0.25271 * 7 6 5 26 26 C 1.36616 * 120.09443 * 359.48688 * 25 7 6 27 27 C 1.50699 * 120.04753 * 180.25610 * 26 25 7 28 28 H 1.09007 * 109.47398 * 239.99143 * 1 2 3 29 29 H 1.09001 * 109.47379 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47792 * 119.99726 * 1 2 3 31 31 H 1.08000 * 120.04851 * 0.02562 * 5 4 2 32 32 H 1.08004 * 119.95273 * 179.97438 * 6 5 4 33 33 H 0.96998 * 120.00049 * 213.63926 * 8 7 6 34 34 H 1.08000 * 119.95184 * 0.02562 * 12 11 9 35 35 H 1.08010 * 120.05009 * 180.27383 * 13 12 11 36 36 H 0.97007 * 120.00252 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.05548 * 180.02562 * 23 14 13 38 38 H 1.08004 * 119.94417 * 179.97438 * 24 23 14 39 39 H 1.07997 * 119.95267 * 179.74402 * 25 7 6 40 40 H 1.08993 * 109.47271 * 264.08362 * 27 26 25 41 41 H 1.09002 * 109.47055 * 24.08148 * 27 26 25 42 42 H 1.09004 * 109.47072 * 144.08127 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2411 -1.2717 -0.0006 5 6 1.5480 -2.4831 0.1195 6 6 2.2349 -3.6635 0.1190 7 6 3.6225 -3.6640 -0.0001 8 7 4.3185 -4.8693 0.0005 9 6 3.7629 -5.9686 -0.5468 10 8 2.7026 -5.8846 -1.1360 11 6 4.4415 -7.2739 -0.4310 12 6 3.8620 -8.4148 -1.0000 13 6 4.4876 -9.6216 -0.9000 14 6 5.7166 -9.7212 -0.2182 15 6 6.3682 -10.9681 -0.1125 16 1 6.1952 -11.7325 -0.8556 17 6 7.2406 -11.2149 0.9574 18 7 7.1906 -10.4665 2.0270 19 14 8.4741 -12.6138 0.8531 20 1 9.7406 -12.1139 0.2603 21 1 8.7400 -13.1420 2.2153 22 1 7.9226 -13.6976 0.0008 23 6 6.2934 -8.5714 0.3569 24 6 5.6605 -7.3689 0.2518 25 6 4.3161 -2.4620 -0.1138 26 6 3.6365 -1.2769 -0.1195 27 6 4.3878 0.0231 -0.2485 28 1 -0.3634 -0.5140 0.8899 29 1 -0.3634 1.0277 0.0005 30 1 -0.3635 -0.5138 -0.8900 31 1 0.4720 -2.4836 0.2122 32 1 1.7013 -4.5979 0.2119 33 1 5.2035 -4.9182 0.3946 34 1 2.9201 -8.3375 -1.5227 35 1 4.0421 -10.5001 -1.3429 36 1 7.7938 -10.6375 2.7672 37 1 7.2355 -8.6429 0.8802 38 1 6.1016 -6.4871 0.6927 39 1 5.3925 -2.4668 -0.2017 40 1 4.5608 0.4426 0.7425 41 1 5.3445 -0.1572 -0.7388 42 1 3.8015 0.7242 -0.8425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089918154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:43 Heat of formation + Delta-G solvation = -48.689602 kcal Electronic energy + Delta-G solvation = -25225.289269 eV Core-core repulsion = 21519.966505 eV Total energy + Delta-G solvation = -3705.322765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.81405 -40.79108 -39.41449 -38.62703 -35.93920 -35.71200 -33.86146 -32.58618 -31.54694 -31.34979 -29.95730 -27.94878 -27.70603 -24.90323 -23.76391 -22.89043 -22.68927 -21.24723 -20.70819 -19.41339 -19.04279 -17.86125 -17.67141 -17.22408 -16.84871 -16.09375 -15.98268 -15.80829 -15.71608 -15.26091 -15.16970 -14.96256 -14.54183 -14.39389 -14.16446 -14.01123 -13.75483 -13.68398 -13.43172 -13.25804 -13.06306 -12.98588 -12.89238 -12.78503 -12.64168 -12.41045 -12.18108 -11.78708 -11.40759 -11.38403 -11.15547 -10.84359 -10.41763 -9.87811 -9.63079 -9.51244 -9.13231 -8.83728 -6.52126 -0.42407 0.37190 0.39860 1.12455 1.32995 1.39778 1.46581 1.52867 2.04679 2.10585 2.15372 2.67633 2.83157 3.21098 3.64215 3.72810 3.81815 4.04185 4.17941 4.22276 4.26496 4.38217 4.40832 4.48011 4.62563 4.69720 4.76779 4.80321 4.87702 4.90618 4.99543 5.06769 5.09720 5.18239 5.24135 5.27034 5.31789 5.44143 5.55339 5.55938 5.76569 5.86839 5.95225 5.95903 6.18869 6.45694 6.50555 6.61748 6.73037 6.84072 7.21042 8.11833 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.031367 B = 0.002216 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.444141 B =12633.968595 C =13198.400874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.397 3.603 3 O -0.492 6.492 4 C -0.218 4.218 5 C -0.033 4.033 6 C -0.167 4.167 7 C 0.186 3.814 8 N -0.669 5.669 9 C 0.575 3.425 10 O -0.574 6.574 11 C -0.296 4.296 12 C -0.026 4.026 13 C -0.252 4.252 14 C 0.103 3.897 15 C -0.469 4.469 16 H 0.087 0.913 17 C 0.038 3.962 18 N -0.795 5.795 19 Si 0.987 3.013 20 H -0.259 1.259 21 H -0.266 1.266 22 H -0.257 1.257 23 C -0.197 4.197 24 C -0.052 4.052 25 C -0.172 4.172 26 C -0.012 4.012 27 C -0.116 4.116 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.164 0.836 32 H 0.122 0.878 33 H 0.421 0.579 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.298 0.702 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.148 0.852 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 13.754 0.538 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.279 3.721 3 O -0.371 6.371 4 C -0.220 4.220 5 C -0.052 4.052 6 C -0.188 4.188 7 C 0.090 3.910 8 N -0.313 5.313 9 C 0.371 3.629 10 O -0.456 6.456 11 C -0.301 4.301 12 C -0.046 4.046 13 C -0.271 4.271 14 C 0.100 3.900 15 C -0.495 4.495 16 H 0.105 0.895 17 C -0.181 4.181 18 N -0.418 5.418 19 Si 0.807 3.193 20 H -0.183 1.183 21 H -0.190 1.190 22 H -0.181 1.181 23 C -0.216 4.216 24 C -0.071 4.071 25 C -0.193 4.193 26 C -0.013 4.013 27 C -0.172 4.172 28 H 0.131 0.869 29 H 0.106 0.894 30 H 0.127 0.873 31 H 0.182 0.818 32 H 0.140 0.860 33 H 0.260 0.740 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.166 0.834 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.633 14.304 0.394 15.041 hybrid contribution 0.906 -1.130 0.262 1.472 sum -3.727 13.174 0.657 13.707 Atomic orbital electron populations 1.22279 0.90951 1.05806 1.06211 1.22741 0.93117 0.86583 0.69660 1.90476 1.72509 1.35309 1.38833 1.20514 0.94071 0.95517 1.11863 1.21257 1.01304 0.89654 0.92973 1.20955 0.93187 0.99744 1.04867 1.18317 0.92376 0.85689 0.94643 1.43373 1.21543 1.07369 1.59055 1.18515 0.83947 0.84125 0.76287 1.90648 1.24242 1.86517 1.44164 1.18990 1.01649 0.92183 1.17254 1.20513 0.97440 0.91917 0.94693 1.20873 0.97779 0.97006 1.11470 1.18163 0.89832 0.93893 0.88100 1.20151 1.21413 0.99676 1.08306 0.89473 1.26926 0.97766 1.00251 0.93190 1.69750 1.31530 1.36523 1.03997 0.85111 0.77761 0.77364 0.79087 1.18321 1.18993 1.18067 1.20971 1.01598 0.92010 1.07023 1.20726 0.93337 0.97444 0.95624 1.20702 1.01239 0.90009 1.07328 1.19979 0.93077 0.95731 0.92506 1.21054 0.99615 0.93246 1.03254 0.86891 0.89418 0.87313 0.81821 0.86011 0.73973 0.87501 0.87588 0.89060 0.87013 0.85774 0.83421 0.90396 0.90758 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.29 9.00 71.24 0.64 -1.65 16 2 C 0.40 8.04 7.15 27.94 0.20 8.24 16 3 O -0.49 -12.54 14.04 -3.07 -0.04 -12.58 16 4 C -0.22 -4.96 5.87 -20.14 -0.12 -5.08 16 5 C -0.03 -0.74 9.41 22.33 0.21 -0.53 16 6 C -0.17 -4.86 8.57 22.13 0.19 -4.67 16 7 C 0.19 5.47 6.27 38.46 0.24 5.71 16 8 N -0.67 -21.02 5.25 -306.27 -1.61 -22.62 16 9 C 0.57 22.68 7.47 86.71 0.65 23.33 16 10 O -0.57 -25.15 14.03 -4.01 -0.06 -25.21 16 11 C -0.30 -12.71 5.89 -19.94 -0.12 -12.82 16 12 C -0.03 -1.20 9.52 22.25 0.21 -0.99 16 13 C -0.25 -11.93 9.73 22.47 0.22 -11.71 16 14 C 0.10 5.16 5.56 -21.28 -0.12 5.04 16 15 C -0.47 -22.78 9.03 23.45 0.21 -22.56 16 16 H 0.09 4.06 7.91 -2.91 -0.02 4.04 16 17 C 0.04 1.72 5.11 85.36 0.44 2.15 16 18 N -0.79 -36.75 11.07 21.87 0.24 -36.51 16 19 Si 0.99 33.56 29.60 68.60 2.03 35.59 16 20 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 21 H -0.27 -8.58 7.11 99.48 0.71 -7.87 16 22 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 23 C -0.20 -9.29 8.63 22.47 0.19 -9.09 16 24 C -0.05 -2.17 9.47 22.25 0.21 -1.96 16 25 C -0.17 -4.26 9.52 22.13 0.21 -4.05 16 26 C -0.01 -0.29 5.89 -19.80 -0.12 -0.40 16 27 C -0.12 -2.41 8.74 71.24 0.62 -1.79 16 28 H 0.11 0.89 7.91 -2.38 -0.02 0.88 16 29 H 0.09 0.97 8.12 -2.39 -0.02 0.95 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.16 2.43 6.98 -2.91 -0.02 2.41 16 32 H 0.12 4.03 6.44 -2.91 -0.02 4.01 16 33 H 0.42 11.08 6.84 -92.71 -0.63 10.45 16 34 H 0.11 4.66 7.63 -2.91 -0.02 4.63 16 35 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.30 12.23 8.29 -92.70 -0.77 11.46 16 37 H 0.11 5.36 6.27 -2.91 -0.02 5.34 16 38 H 0.12 4.10 6.39 -2.91 -0.02 4.09 16 39 H 0.15 2.99 8.05 -2.91 -0.02 2.96 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.29 8.04 -2.39 -0.02 1.27 16 42 H 0.08 1.90 5.81 -2.38 -0.01 1.88 16 Total: -1.00 -61.19 355.16 4.98 -56.20 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: 0.44 Total: 37.95 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 3.98 Total: -32.83 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -1.37 Total: -59.13 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.10 Total: -37.79 kcal Atomic # 14 Polarization: 33.56 SS G_CDS: 2.03 Total: 35.59 kcal Total: -61.19 4.98 -56.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089918154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.514 kcal (2) G-P(sol) polarization free energy of solvation -61.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds