Wall clock time and date at job start Tue Mar 31 2020 13:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.05134 * 2 1 4 4 N 1.46488 * 109.47183 * 58.58445 * 3 2 1 5 5 S 1.65603 * 120.00211 * 164.99990 * 4 3 2 6 6 O 1.42096 * 106.40613 * 178.53903 * 5 4 3 7 7 O 1.42105 * 106.39785 * 311.46154 * 5 4 3 8 8 C 1.76200 * 107.21764 * 64.99577 * 5 4 3 9 9 C 1.38632 * 119.75095 * 269.73296 * 8 5 4 10 10 C 1.37625 * 120.24505 * 179.72549 * 9 8 5 11 11 C 1.40712 * 119.74618 * 0.56176 * 10 9 8 12 12 C 1.41394 * 120.24471 * 179.68246 * 11 10 9 13 13 H 1.07994 * 119.99752 * 155.31365 * 12 11 10 14 14 C 1.39938 * 120.00231 * 335.32020 * 12 11 10 15 15 N 1.30834 * 119.99959 * 342.22735 * 14 12 11 16 16 Si 1.86796 * 120.00367 * 162.23136 * 14 12 11 17 17 H 1.48496 * 109.47498 * 94.66396 * 16 14 12 18 18 H 1.48509 * 109.47331 * 214.66346 * 16 14 12 19 19 H 1.48504 * 109.46970 * 334.65708 * 16 14 12 20 20 C 1.40715 * 119.51242 * 359.71389 * 11 10 9 21 21 C 1.37616 * 119.74441 * 359.97438 * 20 11 10 22 22 C 1.53881 * 110.03309 * 238.58481 * 2 1 3 23 23 C 1.54262 * 106.63689 * 240.68982 * 22 2 1 24 24 C 1.55010 * 104.14068 * 23.62360 * 23 22 2 25 25 C 1.54264 * 110.03422 * 121.41686 * 2 1 3 26 26 H 1.09010 * 109.46946 * 181.41714 * 1 2 3 27 27 H 1.08996 * 109.47273 * 301.41561 * 1 2 3 28 28 H 1.08997 * 109.47406 * 61.42162 * 1 2 3 29 29 H 1.08999 * 109.46907 * 178.58895 * 3 2 1 30 30 H 1.09006 * 109.46865 * 298.57875 * 3 2 1 31 31 H 0.97001 * 120.00569 * 345.00066 * 4 3 2 32 32 H 1.08000 * 119.87687 * 359.97438 * 9 8 5 33 33 H 1.08004 * 120.12603 * 180.27973 * 10 9 8 34 34 H 0.97003 * 120.00139 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.13057 * 179.97438 * 20 11 10 36 36 H 1.08000 * 119.88103 * 180.02562 * 21 20 11 37 37 H 1.09000 * 110.03009 * 359.97438 * 22 2 1 38 38 H 1.09002 * 110.03210 * 121.37888 * 22 2 1 39 39 H 1.08996 * 110.48623 * 142.31301 * 23 22 2 40 40 H 1.09005 * 110.48154 * 264.95436 * 23 22 2 41 41 H 1.08999 * 110.73966 * 203.74069 * 24 23 22 42 42 H 1.08993 * 110.92251 * 80.44208 * 24 23 22 43 43 H 1.09003 * 110.48465 * 214.35901 * 25 2 1 44 44 H 1.08998 * 110.48445 * 336.86569 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 7 1.5458 2.1428 1.1786 5 16 2.2296 3.5774 1.6443 6 8 1.5013 4.0186 2.7819 7 8 3.6350 3.3672 1.6546 8 6 1.9108 4.7466 0.3653 9 6 2.8166 4.8934 -0.6739 10 6 2.5750 5.7995 -1.6812 11 6 1.4093 6.5869 -1.6473 12 6 1.1539 7.5259 -2.6731 13 1 0.1401 7.8321 -2.8847 14 6 2.2148 8.0583 -3.4143 15 7 3.4382 7.9747 -2.9583 16 14 1.8842 8.8885 -5.0547 17 1 1.7488 10.3530 -4.8499 18 1 3.0132 8.6206 -5.9816 19 1 0.6279 8.3517 -5.6368 20 6 0.4999 6.4334 -0.5845 21 6 0.7587 5.5165 0.4085 22 6 2.0571 -0.7536 -1.2338 23 6 2.8882 -1.9405 -0.7046 24 6 2.3281 -2.1901 0.7191 25 6 2.0585 -0.7555 1.2368 26 1 -0.3633 -1.0274 0.0254 27 1 -0.3633 0.5356 0.8770 28 1 -0.3634 0.4916 -0.9024 29 1 3.1442 1.4263 0.0253 30 1 1.7173 1.9471 -0.9025 31 1 0.8083 1.7698 1.6865 32 1 3.7131 4.2916 -0.6952 33 1 3.2798 5.9091 -2.4923 34 1 4.1736 8.3441 -3.4719 35 1 -0.3978 7.0328 -0.5483 36 1 0.0620 5.3966 1.2250 37 1 1.2229 -1.1196 -1.8323 38 1 2.6860 -0.0950 -1.8330 39 1 2.7412 -2.8192 -1.3325 40 1 3.9446 -1.6759 -0.6583 41 1 3.0677 -2.6930 1.3422 42 1 1.4037 -2.7661 0.6782 43 1 2.9811 -0.2999 1.5966 44 1 1.3070 -0.7676 2.0263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092132241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:22 Heat of formation + Delta-G solvation = -89.752456 kcal Electronic energy + Delta-G solvation = -25504.367421 eV Core-core repulsion = 21932.707989 eV Total energy + Delta-G solvation = -3571.659432 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.29761 -37.56219 -36.44473 -35.08944 -34.55596 -34.02477 -30.74065 -30.24740 -29.45764 -28.84399 -26.47888 -25.80500 -23.92660 -21.51007 -21.12614 -20.82703 -18.99314 -18.67469 -17.60957 -17.08066 -16.63880 -16.06336 -15.51718 -15.22293 -14.78696 -14.35488 -14.08948 -13.98872 -13.69702 -13.35492 -13.19774 -13.09619 -12.51926 -12.42532 -12.18521 -11.94178 -11.71720 -11.63641 -11.43217 -11.35313 -11.26548 -11.21128 -11.20280 -11.13831 -10.86334 -10.77484 -10.66404 -10.58830 -10.44880 -10.41382 -9.74876 -9.62242 -9.48240 -8.97502 -7.94743 -7.69498 -7.13333 -4.79329 1.30052 2.26853 2.87385 2.89232 2.93014 2.95770 3.66290 3.78367 4.25134 4.44320 4.46798 4.55352 4.62873 5.09728 5.19079 5.23186 5.29338 5.31324 5.39041 5.43901 5.57164 5.68770 5.73006 5.76582 5.79066 5.87418 5.96155 5.99298 6.05645 6.09511 6.12443 6.21022 6.24695 6.34935 6.39497 6.68667 6.72018 6.92229 7.05969 7.33064 7.37268 7.43842 7.64374 7.77538 7.97857 8.32557 8.52071 8.65842 9.78287 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.003495 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.694195 B = 8009.651141 C = 8901.913045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.071 4.071 3 C 0.133 3.867 4 N -1.124 6.124 5 S 2.694 3.306 6 O -0.988 6.988 7 O -0.985 6.985 8 C -0.787 4.787 9 C -0.016 4.016 10 C -0.183 4.183 11 C 0.140 3.860 12 C -0.437 4.437 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.765 5.765 16 Si 0.916 3.084 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.257 1.257 20 C -0.239 4.239 21 C 0.003 3.997 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.408 0.592 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.289 0.711 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 -14.763 0.339 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 C 0.007 3.993 4 N -0.882 5.882 5 S 2.792 3.208 6 O -0.979 6.979 7 O -0.975 6.975 8 C -0.883 4.883 9 C -0.037 4.037 10 C -0.204 4.204 11 C 0.136 3.864 12 C -0.464 4.464 13 H 0.105 0.895 14 C -0.150 4.150 15 N -0.388 5.388 16 Si 0.739 3.261 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.180 1.180 20 C -0.260 4.260 21 C -0.018 4.018 22 C -0.154 4.154 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.154 4.154 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.242 0.758 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.842 -14.507 1.002 14.657 hybrid contribution -0.644 0.651 -1.183 1.496 sum -2.486 -13.855 -0.180 14.078 Atomic orbital electron populations 1.21906 0.94041 1.01423 1.02248 1.21371 0.95991 0.94174 0.95662 1.21347 0.98770 0.91476 0.87747 1.55732 1.50863 1.40905 1.40673 1.01176 0.73017 0.72576 0.73988 1.93485 1.73886 1.81114 1.49380 1.93481 1.30823 1.85726 1.87457 1.29156 1.09327 1.26464 1.23323 1.20260 0.94868 0.96235 0.92291 1.21332 1.00517 0.98384 1.00120 1.17843 0.90427 0.88600 0.89488 1.19924 0.94863 1.19052 1.12574 0.89496 1.26137 0.94375 0.95036 0.99440 1.69832 1.00662 1.32064 1.36195 0.86155 0.79832 0.79757 0.80338 1.19122 1.19588 1.18021 1.21023 1.02802 1.04846 0.97329 1.20156 0.93093 0.92722 0.95782 1.22236 0.99686 0.96798 0.96701 1.22375 0.99727 0.97844 0.96261 1.22503 1.00507 0.96882 0.96300 1.22501 1.01408 0.94835 0.96706 0.92621 0.92492 0.92172 0.90557 0.91479 0.75819 0.87923 0.86064 0.89970 0.88248 0.87868 0.91414 0.91178 0.91930 0.91523 0.91849 0.91761 0.90954 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 7.98 37.16 0.30 -1.06 16 2 C -0.07 -0.74 0.68 -153.39 -0.10 -0.85 16 3 C 0.13 1.77 4.76 -4.05 -0.02 1.75 16 4 N -1.12 -16.39 5.56 -10.62 -0.06 -16.44 16 5 S 2.69 51.85 5.73 -107.50 -0.62 51.23 16 6 O -0.99 -21.06 17.26 -57.17 -0.99 -22.05 16 7 O -0.98 -21.20 16.72 -57.17 -0.96 -22.15 16 8 C -0.79 -17.29 5.97 -39.29 -0.23 -17.52 16 9 C -0.02 -0.37 9.49 -39.66 -0.38 -0.75 16 10 C -0.18 -4.56 8.70 -38.87 -0.34 -4.89 16 11 C 0.14 3.54 5.57 -106.83 -0.60 2.95 16 12 C -0.44 -10.70 9.05 -37.75 -0.34 -11.05 16 13 H 0.09 2.01 7.91 -52.49 -0.41 1.59 16 14 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 15 N -0.77 -18.37 10.97 55.55 0.61 -17.76 16 16 Si 0.92 16.96 29.59 -169.99 -5.03 11.93 16 17 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 18 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 19 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 20 C -0.24 -5.68 9.80 -38.87 -0.38 -6.06 16 21 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 22 C -0.12 -1.11 6.11 -25.61 -0.16 -1.26 16 23 C -0.12 -1.08 6.84 -25.01 -0.17 -1.25 16 24 C -0.12 -1.07 6.91 -24.67 -0.17 -1.24 16 25 C -0.12 -1.18 5.58 -25.07 -0.14 -1.32 16 26 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.06 0.55 6.53 -51.93 -0.34 0.21 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.06 7.72 -51.93 -0.40 0.66 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.41 5.06 6.98 -34.47 -0.24 4.82 16 32 H 0.10 2.19 7.59 -52.49 -0.40 1.79 16 33 H 0.12 3.05 6.18 -52.48 -0.32 2.72 16 34 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 35 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 36 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 37 H 0.07 0.59 7.67 -51.93 -0.40 0.20 16 38 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16 44 H 0.06 0.62 7.84 -51.93 -0.41 0.21 16 LS Contribution 364.10 15.07 5.49 5.49 Total: -1.00 -29.59 364.10 -11.39 -40.98 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.64 Total: 10.07 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: -3.20 Total: -41.29 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.55 Total: -34.21 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -1.94 Total: -44.20 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 51.85 SS G_CDS: -0.62 Total: 51.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.59 -11.39 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092132241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.772 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds