Wall clock time and date at job start Tue Mar 31 2020 13:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.05134 * 2 1 4 4 N 1.46488 * 109.47183 * 58.58445 * 3 2 1 5 5 S 1.65603 * 120.00211 * 164.99990 * 4 3 2 6 6 O 1.42096 * 106.40613 * 178.53903 * 5 4 3 7 7 O 1.42105 * 106.39785 * 311.46154 * 5 4 3 8 8 C 1.76200 * 107.21764 * 64.99577 * 5 4 3 9 9 C 1.38632 * 119.75095 * 269.73296 * 8 5 4 10 10 C 1.37625 * 120.24505 * 179.72549 * 9 8 5 11 11 C 1.40712 * 119.74618 * 0.56176 * 10 9 8 12 12 C 1.41394 * 120.24471 * 179.68246 * 11 10 9 13 13 H 1.07994 * 119.99752 * 155.31365 * 12 11 10 14 14 C 1.39938 * 120.00231 * 335.32020 * 12 11 10 15 15 N 1.30834 * 119.99959 * 342.22735 * 14 12 11 16 16 Si 1.86796 * 120.00367 * 162.23136 * 14 12 11 17 17 H 1.48496 * 109.47498 * 94.66396 * 16 14 12 18 18 H 1.48509 * 109.47331 * 214.66346 * 16 14 12 19 19 H 1.48504 * 109.46970 * 334.65708 * 16 14 12 20 20 C 1.40715 * 119.51242 * 359.71389 * 11 10 9 21 21 C 1.37616 * 119.74441 * 359.97438 * 20 11 10 22 22 C 1.53881 * 110.03309 * 238.58481 * 2 1 3 23 23 C 1.54262 * 106.63689 * 240.68982 * 22 2 1 24 24 C 1.55010 * 104.14068 * 23.62360 * 23 22 2 25 25 C 1.54264 * 110.03422 * 121.41686 * 2 1 3 26 26 H 1.09010 * 109.46946 * 181.41714 * 1 2 3 27 27 H 1.08996 * 109.47273 * 301.41561 * 1 2 3 28 28 H 1.08997 * 109.47406 * 61.42162 * 1 2 3 29 29 H 1.08999 * 109.46907 * 178.58895 * 3 2 1 30 30 H 1.09006 * 109.46865 * 298.57875 * 3 2 1 31 31 H 0.97001 * 120.00569 * 345.00066 * 4 3 2 32 32 H 1.08000 * 119.87687 * 359.97438 * 9 8 5 33 33 H 1.08004 * 120.12603 * 180.27973 * 10 9 8 34 34 H 0.97003 * 120.00139 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.13057 * 179.97438 * 20 11 10 36 36 H 1.08000 * 119.88103 * 180.02562 * 21 20 11 37 37 H 1.09000 * 110.03009 * 359.97438 * 22 2 1 38 38 H 1.09002 * 110.03210 * 121.37888 * 22 2 1 39 39 H 1.08996 * 110.48623 * 142.31301 * 23 22 2 40 40 H 1.09005 * 110.48154 * 264.95436 * 23 22 2 41 41 H 1.08999 * 110.73966 * 203.74069 * 24 23 22 42 42 H 1.08993 * 110.92251 * 80.44208 * 24 23 22 43 43 H 1.09003 * 110.48465 * 214.35901 * 25 2 1 44 44 H 1.08998 * 110.48445 * 336.86569 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 7 1.5458 2.1428 1.1786 5 16 2.2296 3.5774 1.6443 6 8 1.5013 4.0186 2.7819 7 8 3.6350 3.3672 1.6546 8 6 1.9108 4.7466 0.3653 9 6 2.8166 4.8934 -0.6739 10 6 2.5750 5.7995 -1.6812 11 6 1.4093 6.5869 -1.6473 12 6 1.1539 7.5259 -2.6731 13 1 0.1401 7.8321 -2.8847 14 6 2.2148 8.0583 -3.4143 15 7 3.4382 7.9747 -2.9583 16 14 1.8842 8.8885 -5.0547 17 1 1.7488 10.3530 -4.8499 18 1 3.0132 8.6206 -5.9816 19 1 0.6279 8.3517 -5.6368 20 6 0.4999 6.4334 -0.5845 21 6 0.7587 5.5165 0.4085 22 6 2.0571 -0.7536 -1.2338 23 6 2.8882 -1.9405 -0.7046 24 6 2.3281 -2.1901 0.7191 25 6 2.0585 -0.7555 1.2368 26 1 -0.3633 -1.0274 0.0254 27 1 -0.3633 0.5356 0.8770 28 1 -0.3634 0.4916 -0.9024 29 1 3.1442 1.4263 0.0253 30 1 1.7173 1.9471 -0.9025 31 1 0.8083 1.7698 1.6865 32 1 3.7131 4.2916 -0.6952 33 1 3.2798 5.9091 -2.4923 34 1 4.1736 8.3441 -3.4719 35 1 -0.3978 7.0328 -0.5483 36 1 0.0620 5.3966 1.2250 37 1 1.2229 -1.1196 -1.8323 38 1 2.6860 -0.0950 -1.8330 39 1 2.7412 -2.8192 -1.3325 40 1 3.9446 -1.6759 -0.6583 41 1 3.0677 -2.6930 1.3422 42 1 1.4037 -2.7661 0.6782 43 1 2.9811 -0.2999 1.5966 44 1 1.3070 -0.7676 2.0263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092132241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:21 Heat of formation + Delta-G solvation = -106.831219 kcal Electronic energy + Delta-G solvation = -25505.108012 eV Core-core repulsion = 21932.707989 eV Total energy + Delta-G solvation = -3572.400023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.14582 -39.37888 -38.12318 -36.77877 -35.81880 -35.63759 -32.07098 -31.62912 -31.29307 -29.59247 -27.62286 -27.41163 -24.84611 -23.30350 -22.95013 -21.56698 -20.34049 -19.73883 -19.42165 -18.61170 -18.14097 -17.31240 -17.20336 -16.30388 -15.88786 -15.84913 -15.39657 -15.27115 -14.96961 -14.90335 -14.48054 -14.12789 -13.99116 -13.97797 -13.54693 -13.31445 -13.12757 -13.03064 -13.00012 -12.94541 -12.86413 -12.69898 -12.55895 -12.02483 -11.91553 -11.86599 -11.57780 -11.55516 -11.50638 -11.39754 -11.31420 -11.25120 -11.20034 -10.29960 -9.78656 -9.55009 -8.87271 -6.65094 -0.28578 0.48722 1.05454 1.35781 1.41966 1.52991 2.11293 2.27462 2.54825 2.94227 3.52213 3.54412 3.67572 3.73071 3.81644 4.29976 4.32041 4.34332 4.37029 4.48217 4.53760 4.59614 4.67423 4.82711 4.86385 4.86981 4.92134 4.95481 5.05280 5.08352 5.11999 5.15433 5.20986 5.24158 5.30671 5.34592 5.51318 5.52487 5.54826 5.56901 5.59463 5.76330 5.92937 6.15275 6.22544 6.48951 6.68273 6.80996 8.08113 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.003495 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.694195 B = 8009.651141 C = 8901.913045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.066 4.066 3 C 0.126 3.874 4 N -1.105 6.105 5 S 2.725 3.275 6 O -1.004 7.004 7 O -1.005 7.005 8 C -0.796 4.796 9 C -0.020 4.020 10 C -0.206 4.206 11 C 0.112 3.888 12 C -0.467 4.467 13 H 0.092 0.908 14 C 0.034 3.966 15 N -0.799 5.799 16 Si 0.992 3.008 17 H -0.260 1.260 18 H -0.263 1.263 19 H -0.253 1.253 20 C -0.257 4.257 21 C -0.002 4.002 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.121 4.121 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.422 0.578 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.298 0.702 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 -16.155 -0.019 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C 0.000 4.000 4 N -0.867 5.867 5 S 2.821 3.179 6 O -0.995 6.995 7 O -0.995 6.995 8 C -0.889 4.889 9 C -0.040 4.040 10 C -0.226 4.226 11 C 0.109 3.891 12 C -0.494 4.494 13 H 0.110 0.890 14 C -0.185 4.185 15 N -0.422 5.422 16 Si 0.811 3.189 17 H -0.185 1.185 18 H -0.187 1.187 19 H -0.176 1.176 20 C -0.277 4.277 21 C -0.022 4.022 22 C -0.156 4.156 23 C -0.162 4.162 24 C -0.157 4.157 25 C -0.159 4.159 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.259 0.741 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.717 -15.882 0.648 16.125 hybrid contribution -0.356 0.987 -0.975 1.432 sum -3.073 -14.895 -0.328 15.212 Atomic orbital electron populations 1.21923 0.93129 1.02547 1.02055 1.21368 0.96668 0.92146 0.96607 1.21542 0.98526 0.93261 0.86656 1.55263 1.51165 1.39007 1.41273 1.00253 0.72357 0.72626 0.72709 1.93456 1.74106 1.81987 1.49951 1.93456 1.32504 1.86098 1.87483 1.29633 1.08649 1.27293 1.23283 1.20440 0.95474 0.95821 0.92221 1.21347 1.00886 0.99600 1.00816 1.18194 0.91071 0.89378 0.90501 1.20227 0.95743 1.19806 1.13590 0.88975 1.27039 0.93675 0.95169 1.02646 1.69869 1.01722 1.32829 1.37797 0.85031 0.79848 0.78611 0.75376 1.18455 1.18698 1.17621 1.21258 1.03268 1.05680 0.97541 1.20450 0.93587 0.92165 0.95968 1.22265 1.00127 0.96945 0.96257 1.22385 0.99214 0.97925 0.96638 1.22494 1.01262 0.95912 0.96043 1.22530 1.00894 0.95765 0.96674 0.90883 0.92414 0.92636 0.91293 0.92033 0.74107 0.86813 0.87187 0.89059 0.87108 0.85730 0.90306 0.91964 0.90523 0.92112 0.91285 0.90539 0.92504 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.98 71.98 0.57 -1.82 16 2 C -0.07 -1.29 0.68 -51.46 -0.03 -1.32 16 3 C 0.13 3.26 4.76 86.38 0.41 3.67 16 4 N -1.10 -30.89 5.56 -187.50 -1.04 -31.94 16 5 S 2.73 102.90 5.73 -56.49 -0.32 102.58 16 6 O -1.00 -41.58 17.26 -128.00 -2.21 -43.79 16 7 O -1.01 -42.83 16.72 -128.00 -2.14 -44.97 16 8 C -0.80 -35.00 5.97 22.46 0.13 -34.86 16 9 C -0.02 -0.92 9.49 22.22 0.21 -0.71 16 10 C -0.21 -10.61 8.70 22.73 0.20 -10.41 16 11 C 0.11 5.83 5.57 -21.29 -0.12 5.71 16 12 C -0.47 -23.38 9.05 23.46 0.21 -23.17 16 13 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 14 C 0.03 1.58 5.14 85.25 0.44 2.02 16 15 N -0.80 -39.16 10.97 21.83 0.24 -38.92 16 16 Si 0.99 34.52 29.59 68.60 2.03 36.55 16 17 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 18 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 19 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 20 C -0.26 -12.37 9.80 22.73 0.22 -12.15 16 21 C 0.00 -0.09 9.49 22.22 0.21 0.12 16 22 C -0.12 -2.05 6.11 31.32 0.19 -1.86 16 23 C -0.12 -1.90 6.84 31.71 0.22 -1.68 16 24 C -0.12 -1.76 6.91 31.93 0.22 -1.54 16 25 C -0.12 -2.22 5.58 31.67 0.18 -2.04 16 26 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.06 0.97 6.53 -2.39 -0.02 0.96 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.90 7.72 -2.39 -0.02 1.88 16 30 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.42 9.68 6.98 -96.75 -0.68 9.00 16 32 H 0.11 4.95 7.59 -2.91 -0.02 4.93 16 33 H 0.11 5.79 6.18 -2.91 -0.02 5.77 16 34 H 0.30 12.98 8.30 -92.71 -0.77 12.21 16 35 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 36 H 0.12 4.93 7.60 -2.91 -0.02 4.91 16 37 H 0.08 1.20 7.67 -2.39 -0.02 1.19 16 38 H 0.06 1.18 7.67 -2.39 -0.02 1.16 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 1.22 7.84 -2.39 -0.02 1.20 16 44 H 0.07 1.22 7.84 -2.39 -0.02 1.20 16 Total: -1.00 -63.50 364.10 0.14 -63.36 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: 0.32 Total: 37.17 kcal Atomic # 6 Polarization: -83.31 SS G_CDS: 3.26 Total: -80.04 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -0.80 Total: -70.85 kcal Atomic # 8 Polarization: -84.41 SS G_CDS: -4.35 Total: -88.76 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 2.03 Total: 36.55 kcal Atomic # 16 Polarization: 102.90 SS G_CDS: -0.32 Total: 102.58 kcal Total: -63.50 0.14 -63.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092132241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.470 kcal (2) G-P(sol) polarization free energy of solvation -63.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds