Wall clock time and date at job start Tue Mar 31 2020 14:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.52387 * 2 1 4 4 C 1.53046 * 109.49942 * 239.91911 * 2 1 3 5 5 C 1.53035 * 109.53744 * 178.68309 * 4 2 1 6 6 C 1.52754 * 109.38622 * 61.24174 * 5 4 2 7 7 N 1.46925 * 109.00835 * 305.58653 * 6 5 4 8 8 S 1.65606 * 120.63123 * 233.58605 * 7 6 5 9 9 O 1.42099 * 106.40277 * 156.17809 * 8 7 6 10 10 O 1.42101 * 106.39975 * 23.25906 * 8 7 6 11 11 C 1.76195 * 107.21599 * 269.71690 * 8 7 6 12 12 C 1.38636 * 119.75066 * 90.00236 * 11 8 7 13 13 C 1.37613 * 120.24993 * 179.97438 * 12 11 8 14 14 C 1.40711 * 119.74614 * 0.26968 * 13 12 11 15 15 C 1.41403 * 120.24606 * 179.70288 * 14 13 12 16 16 H 1.07996 * 119.99673 * 24.27398 * 15 14 13 17 17 C 1.39947 * 119.99783 * 204.27786 * 15 14 13 18 18 N 1.30821 * 120.00278 * 17.70402 * 17 15 14 19 19 Si 1.86794 * 119.99656 * 197.69699 * 17 15 14 20 20 H 1.48501 * 109.47529 * 60.00194 * 19 17 15 21 21 H 1.48506 * 109.47057 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47379 * 300.00118 * 19 17 15 23 23 C 1.40719 * 119.50996 * 359.43680 * 14 13 12 24 24 C 1.37615 * 119.74398 * 0.58788 * 23 14 13 25 25 C 1.46927 * 118.74008 * 53.30773 * 7 6 5 26 26 H 1.08997 * 109.47090 * 299.91763 * 1 2 3 27 27 H 1.08996 * 109.47660 * 59.92175 * 1 2 3 28 28 H 1.09007 * 109.46747 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47130 * 180.08320 * 3 2 1 30 30 H 1.09005 * 109.46726 * 300.07929 * 3 2 1 31 31 H 1.09000 * 109.47021 * 60.07998 * 3 2 1 32 32 H 1.08998 * 109.45658 * 298.70604 * 4 2 1 33 33 H 1.08996 * 109.45710 * 58.65783 * 4 2 1 34 34 H 1.09003 * 109.49407 * 181.31760 * 5 4 2 35 35 H 1.08998 * 109.50012 * 301.37516 * 5 4 2 36 36 H 1.08997 * 109.51394 * 185.70464 * 6 5 4 37 37 H 1.08996 * 109.43585 * 65.41919 * 6 5 4 38 38 H 1.08005 * 119.87237 * 359.97438 * 12 11 8 39 39 H 1.08006 * 120.12661 * 180.02562 * 13 12 11 40 40 H 0.96999 * 120.00115 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.12422 * 180.29259 * 23 14 13 42 42 H 1.07998 * 119.87803 * 179.70785 * 24 23 14 43 43 H 1.09000 * 109.58539 * 66.43299 * 25 7 6 44 44 H 1.08995 * 109.59004 * 186.85676 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5708 -0.6950 -1.2660 6 6 4.1055 -1.4215 -0.0332 7 7 3.5046 -0.8291 1.1695 8 16 4.4588 -0.2841 2.4085 9 8 3.6925 0.6869 3.1079 10 8 5.7327 -0.0083 1.8424 11 6 4.6895 -1.6311 3.5205 12 6 5.7621 -2.4919 3.3454 13 6 5.9523 -3.5470 4.2081 14 6 5.0499 -3.7538 5.2678 15 6 5.2317 -4.8383 6.1568 16 1 6.2140 -5.2660 6.2929 17 6 4.1388 -5.3572 6.8601 18 7 2.9205 -5.0962 6.4614 19 14 4.4197 -6.4229 8.3683 20 1 5.1683 -5.6476 9.3900 21 1 3.1100 -6.8442 8.9276 22 1 5.2039 -7.6248 7.9862 23 6 3.9683 -2.8701 5.4396 24 6 3.7974 -1.8220 4.5644 25 6 2.0413 -0.7238 1.2496 26 1 -0.3633 0.5125 0.8907 27 1 -0.3634 0.5150 -0.8892 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1313 1.4410 -0.0015 30 1 1.6772 1.9566 -0.8893 31 1 1.6796 1.9558 0.8907 32 1 1.6967 -1.7572 -1.2353 33 1 1.6581 -0.2245 -2.1389 34 1 3.9334 -1.1897 -2.1671 35 1 3.9159 0.3389 -1.2547 36 1 5.1895 -1.3159 0.0100 37 1 3.8413 -2.4774 -0.0915 38 1 6.4509 -2.3337 2.5287 39 1 6.7888 -4.2161 4.0700 40 1 2.1630 -5.4562 6.9487 41 1 3.2724 -3.0168 6.2524 42 1 2.9653 -1.1452 4.6915 43 1 1.6053 -1.7216 1.2981 44 1 1.7638 -0.1580 2.1389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092132322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:48 Heat of formation + Delta-G solvation = -79.117942 kcal Electronic energy + Delta-G solvation = -26136.365541 eV Core-core repulsion = 22565.167256 eV Total energy + Delta-G solvation = -3571.198285 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.26190 -37.56494 -36.55481 -35.10990 -34.04205 -33.94667 -31.76390 -30.24826 -29.46458 -27.28442 -26.72355 -25.80926 -24.39403 -21.97801 -21.45064 -21.12208 -18.87533 -18.13702 -17.62459 -17.20174 -16.50573 -15.61954 -15.45041 -14.83374 -14.63634 -14.23619 -14.17568 -14.04513 -13.48703 -13.38126 -13.19679 -13.00223 -12.40987 -12.22040 -12.14867 -12.06893 -11.84659 -11.75448 -11.62582 -11.46974 -11.43108 -11.28414 -11.22362 -11.14658 -10.98920 -10.89620 -10.70668 -10.42577 -10.29755 -10.17179 -9.74680 -9.57517 -9.50275 -8.56669 -7.94502 -7.70176 -7.14334 -4.79951 1.22902 2.26509 2.87681 2.89175 2.92225 2.94937 3.64166 3.66323 4.24734 4.53660 4.64156 4.76412 4.81580 5.01524 5.21288 5.29148 5.33448 5.38906 5.43467 5.58490 5.65442 5.71820 5.81222 5.88076 5.89133 5.93886 5.99526 6.05684 6.06863 6.11803 6.14502 6.21144 6.24786 6.48291 6.51913 6.67400 6.69331 6.85318 7.03225 7.06745 7.34107 7.42827 7.63818 7.77000 7.96950 8.31865 8.51347 8.65355 9.77186 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.003615 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.651641 B = 7743.836186 C = 8209.773475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.078 4.078 3 C -0.143 4.143 4 C -0.104 4.104 5 C -0.134 4.134 6 C 0.121 3.879 7 N -1.001 6.001 8 S 2.690 3.310 9 O -0.981 6.981 10 O -0.985 6.985 11 C -0.787 4.787 12 C 0.001 3.999 13 C -0.239 4.239 14 C 0.140 3.860 15 C -0.437 4.437 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.767 5.767 19 Si 0.917 3.083 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.261 1.261 23 C -0.183 4.183 24 C -0.015 4.015 25 C 0.131 3.869 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.289 0.711 41 H 0.122 0.878 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 4.037 -10.566 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 C -0.201 4.201 4 C -0.142 4.142 5 C -0.173 4.173 6 C -0.005 4.005 7 N -0.836 5.836 8 S 2.791 3.209 9 O -0.972 6.972 10 O -0.975 6.975 11 C -0.883 4.883 12 C -0.019 4.019 13 C -0.259 4.259 14 C 0.136 3.864 15 C -0.464 4.464 16 H 0.105 0.895 17 C -0.149 4.149 18 N -0.389 5.389 19 Si 0.741 3.259 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.203 4.203 24 C -0.036 4.036 25 C 0.006 3.994 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.140 0.860 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.666 4.861 -10.481 12.460 hybrid contribution -0.105 -1.353 0.887 1.621 sum -4.770 3.508 -9.594 11.274 Atomic orbital electron populations 1.21814 0.94112 1.01915 1.01918 1.20869 0.95315 0.96025 0.95741 1.21911 1.01496 0.95011 1.01633 1.21525 0.95403 1.00401 0.96859 1.21860 0.96083 1.01657 0.97739 1.21245 0.98329 0.96992 0.83910 1.57856 1.15740 1.78395 1.31644 1.01350 0.72258 0.74727 0.72556 1.93465 1.71771 1.58688 1.73241 1.93459 1.40637 1.84868 1.78585 1.29264 1.11436 1.27125 1.20477 1.20154 0.93178 0.92093 0.96501 1.21044 1.04066 1.01475 0.99361 1.17844 0.89825 0.90147 0.88572 1.19916 0.95779 1.12267 1.18433 0.89472 1.26126 0.94401 0.96285 0.98110 1.69807 0.99687 1.34280 1.35133 0.86197 0.79002 0.80127 0.80621 1.18338 1.19890 1.18563 1.21331 1.01867 0.95462 1.01655 1.20241 0.94939 0.95559 0.92824 1.21427 0.79341 1.00439 0.98238 0.92296 0.92576 0.92463 0.92474 0.92885 0.92204 0.91800 0.92111 0.91130 0.91257 0.89165 0.91678 0.87903 0.88203 0.89945 0.85989 0.87998 0.91544 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.48 37.16 0.32 -1.04 16 2 C -0.08 -0.90 0.77 -154.38 -0.12 -1.02 16 3 C -0.14 -1.74 7.99 37.16 0.30 -1.44 16 4 C -0.10 -1.08 4.71 -26.69 -0.13 -1.21 16 5 C -0.13 -1.49 5.72 -26.84 -0.15 -1.65 16 6 C 0.12 1.65 6.45 -3.94 -0.03 1.62 16 7 N -1.00 -15.96 2.74 -113.77 -0.31 -16.27 16 8 S 2.69 53.43 5.73 -107.50 -0.62 52.81 16 9 O -0.98 -21.09 15.85 -57.17 -0.91 -22.00 16 10 O -0.98 -21.04 15.84 -57.17 -0.91 -21.95 16 11 C -0.79 -17.69 6.00 -39.29 -0.24 -17.93 16 12 C 0.00 0.02 9.49 -39.66 -0.38 -0.36 16 13 C -0.24 -5.70 9.80 -38.88 -0.38 -6.08 16 14 C 0.14 3.57 5.57 -106.82 -0.60 2.97 16 15 C -0.44 -10.75 9.05 -37.74 -0.34 -11.10 16 16 H 0.09 2.02 7.91 -52.49 -0.41 1.61 16 17 C 0.07 1.68 5.14 -17.34 -0.09 1.59 16 18 N -0.77 -18.19 10.95 55.55 0.61 -17.58 16 19 Si 0.92 17.02 29.59 -169.99 -5.03 11.99 16 20 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 21 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 22 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 23 C -0.18 -4.61 8.70 -38.87 -0.34 -4.95 16 24 C -0.02 -0.36 9.49 -39.66 -0.38 -0.74 16 25 C 0.13 1.86 5.16 -3.71 -0.02 1.85 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.81 6.33 -51.93 -0.33 0.48 16 36 H 0.09 1.28 6.91 -51.93 -0.36 0.92 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 2.09 7.60 -52.48 -0.40 1.70 16 39 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 40 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 41 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 42 H 0.10 2.22 7.60 -52.49 -0.40 1.82 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.38 6.92 -51.93 -0.36 1.02 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -28.84 357.71 -11.01 -39.85 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.68 Total: 7.24 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: -2.56 Total: -39.48 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.30 Total: -33.85 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.81 Total: -43.95 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 16 Polarization: 53.43 SS G_CDS: -0.62 Total: 52.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.84 -11.01 -39.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092132322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.271 kcal (2) G-P(sol) polarization free energy of solvation -28.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds