Wall clock time and date at job start Tue Mar 31 2020 13:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46509 * 110.72977 * 2 1 4 4 S 1.65603 * 119.99587 * 39.01429 * 3 2 1 5 5 O 1.42099 * 104.27382 * 175.75531 * 4 3 2 6 6 O 1.42101 * 104.27498 * 303.61268 * 4 3 2 7 7 C 1.81399 * 104.45115 * 59.68508 * 4 3 2 8 8 C 1.53002 * 109.46687 * 172.83009 * 7 4 3 9 9 C 1.53008 * 109.46667 * 180.02562 * 8 7 4 10 10 C 1.50698 * 109.46783 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00151 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99846 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00306 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00132 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47217 * 89.99484 * 14 12 10 16 16 H 1.48501 * 109.47367 * 209.99745 * 14 12 10 17 17 H 1.48504 * 109.47122 * 329.99911 * 14 12 10 18 18 C 1.54348 * 110.99577 * 123.52889 * 2 1 3 19 19 C 1.51371 * 105.17284 * 144.64783 * 18 2 1 20 20 C 1.38499 * 130.38999 * 162.81585 * 19 18 2 21 21 C 1.38105 * 120.21004 * 180.25743 * 20 19 18 22 22 C 1.38252 * 119.93909 * 359.47605 * 21 20 19 23 23 C 1.38110 * 119.92896 * 0.52049 * 22 21 20 24 24 C 1.38218 * 109.75691 * 342.81954 * 19 18 2 25 25 C 1.51367 * 109.76086 * 359.97438 * 24 19 18 26 26 H 1.09000 * 109.46925 * 183.40153 * 1 2 3 27 27 H 1.09002 * 109.47021 * 303.40218 * 1 2 3 28 28 H 1.09007 * 109.47194 * 63.40424 * 1 2 3 29 29 H 0.96995 * 120.00034 * 219.00970 * 3 2 1 30 30 H 1.08997 * 109.46725 * 292.82639 * 7 4 3 31 31 H 1.08993 * 109.46995 * 52.82590 * 7 4 3 32 32 H 1.08997 * 109.47235 * 299.99317 * 8 7 4 33 33 H 1.08998 * 109.47457 * 60.00404 * 8 7 4 34 34 H 1.08997 * 109.46652 * 299.99573 * 9 8 7 35 35 H 1.08993 * 109.47088 * 59.99536 * 9 8 7 36 36 H 0.96994 * 120.00566 * 180.02562 * 13 12 10 37 37 H 1.09005 * 110.29663 * 25.72302 * 18 2 1 38 38 H 1.08997 * 110.30234 * 263.57732 * 18 2 1 39 39 H 1.08001 * 119.89397 * 359.97438 * 20 19 18 40 40 H 1.08001 * 120.02806 * 179.74825 * 21 20 19 41 41 H 1.08000 * 120.03564 * 180.24940 * 22 21 20 42 42 H 1.08000 * 119.88813 * 179.73049 * 23 22 21 43 43 H 1.09002 * 110.30090 * 136.11480 * 25 24 19 44 44 H 1.08995 * 110.30861 * 258.27242 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0485 1.3702 0.0000 4 16 1.2994 2.5390 0.9029 5 8 2.1208 3.6871 0.7409 6 8 -0.0450 2.5292 0.4427 7 6 1.3934 1.9243 2.6069 8 6 0.8897 3.0039 3.5670 9 6 0.9697 2.4857 5.0044 10 6 0.4730 3.5488 5.9499 11 1 0.1345 4.4992 5.5643 12 6 0.4515 3.3086 7.3074 13 7 0.8641 2.1516 7.7771 14 14 -0.1635 4.6266 8.4796 15 1 -1.6264 4.4676 8.6797 16 1 0.5321 4.4922 9.7847 17 1 0.1147 5.9679 7.9062 18 6 2.0830 -0.7959 1.2012 19 6 3.3374 -1.4691 0.6868 20 6 4.3971 -2.0375 1.3738 21 6 5.4530 -2.5981 0.6823 22 6 5.4479 -2.6020 -0.7002 23 6 4.3920 -2.0356 -1.3870 24 6 3.3349 -1.4679 -0.6954 25 6 2.0785 -0.7946 -1.2044 26 1 -0.3633 -1.0259 0.0610 27 1 -0.3633 0.5658 0.8579 28 1 -0.3634 0.4601 -0.9190 29 1 2.8307 1.5928 -0.5287 30 1 0.7747 1.0325 2.7061 31 1 2.4275 1.6777 2.8476 32 1 1.5085 3.8958 3.4678 33 1 -0.1444 3.2505 3.3263 34 1 0.3512 1.5938 5.1039 35 1 2.0038 2.2394 5.2448 36 1 0.8487 1.9824 8.7321 37 1 1.3586 -1.5431 1.5255 38 1 2.3252 -0.1215 2.0225 39 1 4.3999 -2.0384 2.4538 40 1 6.2798 -3.0369 1.2210 41 1 6.2709 -3.0435 -1.2426 42 1 4.3908 -2.0351 -2.4670 43 1 2.3177 -0.1188 -2.0255 44 1 1.3532 -1.5414 -1.5271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092268304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:09 Heat of formation + Delta-G solvation = -61.520333 kcal Electronic energy + Delta-G solvation = -25453.268590 eV Core-core repulsion = 21882.833394 eV Total energy + Delta-G solvation = -3570.435196 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.63552 -37.59508 -36.76048 -35.75285 -34.71447 -32.78415 -32.24179 -31.62945 -29.92858 -28.11619 -27.39582 -26.38428 -23.75445 -22.05975 -21.29412 -20.90781 -20.33394 -19.05221 -17.46103 -16.89100 -16.52731 -16.41149 -15.76265 -15.52820 -15.25700 -14.90741 -14.48882 -14.33841 -13.97683 -13.79205 -13.35442 -13.27326 -12.90301 -12.82837 -12.54834 -12.40848 -12.25100 -11.92568 -11.86350 -11.79695 -11.64606 -11.45166 -11.35110 -11.20916 -10.98815 -10.93439 -10.87043 -10.69636 -10.39696 -9.96297 -9.77027 -9.35490 -9.11133 -8.98119 -8.71750 -8.41560 -6.06610 -4.09574 0.46045 1.15473 1.20002 2.79858 3.29870 3.36113 3.40233 3.55384 3.90803 3.99802 4.21591 4.41786 4.43284 4.60763 4.69551 4.81806 4.86777 4.90072 5.00431 5.14648 5.20404 5.29638 5.30026 5.41070 5.42145 5.48583 5.49696 5.61665 5.72006 5.80850 5.91186 5.96717 6.04425 6.19545 6.24788 6.26580 6.32661 6.43640 6.45456 6.80755 6.85192 6.92314 7.55800 7.65753 7.91394 8.31954 8.96624 9.55239 11.04569 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.003307 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.244342 B = 8463.599067 C = 9648.719610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.178 3.822 3 N -1.109 6.109 4 S 2.599 3.401 5 O -0.964 6.964 6 O -0.959 6.959 7 C -0.613 4.613 8 C -0.105 4.105 9 C 0.031 3.969 10 C -0.526 4.526 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.114 4.114 19 C -0.086 4.086 20 C -0.106 4.106 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.108 4.108 24 C -0.100 4.100 25 C -0.077 4.077 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.415 0.585 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.020 0.980 36 H 0.261 0.739 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.015 -11.812 -19.174 23.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.088 3.912 3 N -0.866 5.866 4 S 2.695 3.305 5 O -0.955 6.955 6 O -0.948 6.948 7 C -0.745 4.745 8 C -0.144 4.144 9 C -0.007 4.007 10 C -0.565 4.565 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.153 4.153 19 C -0.086 4.086 20 C -0.124 4.124 21 C -0.137 4.137 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.101 4.101 25 C -0.115 4.115 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.250 0.750 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.103 0.897 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.495 -11.142 -19.292 22.946 hybrid contribution 0.476 0.083 1.027 1.135 sum 5.971 -11.058 -18.265 22.171 Atomic orbital electron populations 1.22476 0.91455 1.03314 1.05525 1.20718 0.94145 0.81218 0.95094 1.55741 1.45582 1.21573 1.63745 1.05351 0.74339 0.73389 0.77414 1.93573 1.69031 1.47003 1.85847 1.93594 1.36360 1.86078 1.78802 1.30733 1.10982 1.11691 1.21057 1.21502 1.00206 0.94786 0.97916 1.19054 0.97673 0.96640 0.87323 1.21253 1.42974 1.00728 0.91505 0.92382 1.25010 0.95294 0.95601 0.98428 1.69950 1.47250 1.22635 1.13578 0.86564 0.78901 0.82130 0.80269 1.20567 1.21180 1.19738 1.21987 0.94936 0.99699 0.98661 1.20489 0.95635 0.98242 0.94196 1.20725 0.93213 0.98299 1.00189 1.21059 0.98354 0.99925 0.94372 1.21023 0.98400 1.00279 0.94437 1.20589 0.93459 0.98897 0.99615 1.20545 0.95868 0.99266 0.94373 1.21325 0.94273 0.98530 0.97362 0.90751 0.90235 0.90163 0.75036 0.85220 0.85203 0.91426 0.91711 0.96109 0.96132 0.92904 0.88339 0.89049 0.85902 0.85918 0.86048 0.86369 0.89748 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 7.19 37.16 0.27 -1.44 16 2 C 0.18 1.74 1.05 -130.40 -0.14 1.61 16 3 N -1.11 -12.28 5.48 1.68 0.01 -12.27 16 4 S 2.60 37.97 5.01 -107.50 -0.54 37.43 16 5 O -0.96 -17.28 18.08 -57.54 -1.04 -18.32 16 6 O -0.96 -15.80 14.73 -57.54 -0.85 -16.65 16 7 C -0.61 -9.28 4.24 37.16 0.16 -9.12 16 8 C -0.10 -2.09 5.16 -26.73 -0.14 -2.23 16 9 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 10 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 11 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 14 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 18 C -0.11 -1.15 5.50 -26.85 -0.15 -1.29 16 19 C -0.09 -0.89 6.14 -104.20 -0.64 -1.53 16 20 C -0.11 -1.09 10.04 -39.53 -0.40 -1.48 16 21 C -0.12 -1.08 10.05 -39.62 -0.40 -1.48 16 22 C -0.12 -1.05 10.05 -39.62 -0.40 -1.45 16 23 C -0.11 -0.94 10.04 -39.53 -0.40 -1.34 16 24 C -0.10 -0.96 6.14 -104.21 -0.64 -1.60 16 25 C -0.08 -0.63 5.92 -26.84 -0.16 -0.79 16 26 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 27 H 0.08 0.92 5.25 -51.93 -0.27 0.65 16 28 H 0.08 0.83 7.98 -51.93 -0.41 0.42 16 29 H 0.42 4.04 8.65 -34.47 -0.30 3.74 16 30 H 0.13 1.72 6.75 -51.93 -0.35 1.37 16 31 H 0.13 1.78 7.42 -51.93 -0.39 1.39 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.10 0.86 7.85 -51.93 -0.41 0.46 16 38 H 0.09 0.96 5.05 -51.93 -0.26 0.69 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.08 0.63 8.03 -51.93 -0.42 0.21 16 44 H 0.10 0.65 7.90 -51.93 -0.41 0.24 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -34.46 362.27 -11.38 -45.84 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.56 Total: 2.65 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: -3.58 Total: -34.99 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.75 Total: -37.89 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.89 Total: -34.97 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 37.97 SS G_CDS: -0.54 Total: 37.43 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.46 -11.38 -45.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092268304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.680 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds