Wall clock time and date at job start Tue Mar 31 2020 13:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46509 * 110.72977 * 2 1 4 4 S 1.65603 * 119.99587 * 39.01429 * 3 2 1 5 5 O 1.42099 * 104.27382 * 175.75531 * 4 3 2 6 6 O 1.42101 * 104.27498 * 303.61268 * 4 3 2 7 7 C 1.81399 * 104.45115 * 59.68508 * 4 3 2 8 8 C 1.53002 * 109.46687 * 172.83009 * 7 4 3 9 9 C 1.53008 * 109.46667 * 180.02562 * 8 7 4 10 10 C 1.50698 * 109.46783 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00151 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99846 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00306 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00132 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47217 * 89.99484 * 14 12 10 16 16 H 1.48501 * 109.47367 * 209.99745 * 14 12 10 17 17 H 1.48504 * 109.47122 * 329.99911 * 14 12 10 18 18 C 1.54348 * 110.99577 * 123.52889 * 2 1 3 19 19 C 1.51371 * 105.17284 * 144.64783 * 18 2 1 20 20 C 1.38499 * 130.38999 * 162.81585 * 19 18 2 21 21 C 1.38105 * 120.21004 * 180.25743 * 20 19 18 22 22 C 1.38252 * 119.93909 * 359.47605 * 21 20 19 23 23 C 1.38110 * 119.92896 * 0.52049 * 22 21 20 24 24 C 1.38218 * 109.75691 * 342.81954 * 19 18 2 25 25 C 1.51367 * 109.76086 * 359.97438 * 24 19 18 26 26 H 1.09000 * 109.46925 * 183.40153 * 1 2 3 27 27 H 1.09002 * 109.47021 * 303.40218 * 1 2 3 28 28 H 1.09007 * 109.47194 * 63.40424 * 1 2 3 29 29 H 0.96995 * 120.00034 * 219.00970 * 3 2 1 30 30 H 1.08997 * 109.46725 * 292.82639 * 7 4 3 31 31 H 1.08993 * 109.46995 * 52.82590 * 7 4 3 32 32 H 1.08997 * 109.47235 * 299.99317 * 8 7 4 33 33 H 1.08998 * 109.47457 * 60.00404 * 8 7 4 34 34 H 1.08997 * 109.46652 * 299.99573 * 9 8 7 35 35 H 1.08993 * 109.47088 * 59.99536 * 9 8 7 36 36 H 0.96994 * 120.00566 * 180.02562 * 13 12 10 37 37 H 1.09005 * 110.29663 * 25.72302 * 18 2 1 38 38 H 1.08997 * 110.30234 * 263.57732 * 18 2 1 39 39 H 1.08001 * 119.89397 * 359.97438 * 20 19 18 40 40 H 1.08001 * 120.02806 * 179.74825 * 21 20 19 41 41 H 1.08000 * 120.03564 * 180.24940 * 22 21 20 42 42 H 1.08000 * 119.88813 * 179.73049 * 23 22 21 43 43 H 1.09002 * 110.30090 * 136.11480 * 25 24 19 44 44 H 1.08995 * 110.30861 * 258.27242 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0485 1.3702 0.0000 4 16 1.2994 2.5390 0.9029 5 8 2.1208 3.6871 0.7409 6 8 -0.0450 2.5292 0.4427 7 6 1.3934 1.9243 2.6069 8 6 0.8897 3.0039 3.5670 9 6 0.9697 2.4857 5.0044 10 6 0.4730 3.5488 5.9499 11 1 0.1345 4.4992 5.5643 12 6 0.4515 3.3086 7.3074 13 7 0.8641 2.1516 7.7771 14 14 -0.1635 4.6266 8.4796 15 1 -1.6264 4.4676 8.6797 16 1 0.5321 4.4922 9.7847 17 1 0.1147 5.9679 7.9062 18 6 2.0830 -0.7959 1.2012 19 6 3.3374 -1.4691 0.6868 20 6 4.3971 -2.0375 1.3738 21 6 5.4530 -2.5981 0.6823 22 6 5.4479 -2.6020 -0.7002 23 6 4.3920 -2.0356 -1.3870 24 6 3.3349 -1.4679 -0.6954 25 6 2.0785 -0.7946 -1.2044 26 1 -0.3633 -1.0259 0.0610 27 1 -0.3633 0.5658 0.8579 28 1 -0.3634 0.4601 -0.9190 29 1 2.8307 1.5928 -0.5287 30 1 0.7747 1.0325 2.7061 31 1 2.4275 1.6777 2.8476 32 1 1.5085 3.8958 3.4678 33 1 -0.1444 3.2505 3.3263 34 1 0.3512 1.5938 5.1039 35 1 2.0038 2.2394 5.2448 36 1 0.8487 1.9824 8.7321 37 1 1.3586 -1.5431 1.5255 38 1 2.3252 -0.1215 2.0225 39 1 4.3999 -2.0384 2.4538 40 1 6.2798 -3.0369 1.2210 41 1 6.2709 -3.0435 -1.2426 42 1 4.3908 -2.0351 -2.4670 43 1 2.3177 -0.1188 -2.0255 44 1 1.3532 -1.5414 -1.5271 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092268304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:08 Heat of formation + Delta-G solvation = -83.447560 kcal Electronic energy + Delta-G solvation = -25454.219426 eV Core-core repulsion = 21882.833394 eV Total energy + Delta-G solvation = -3571.386031 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35110 -38.52708 -37.87515 -37.04554 -36.49209 -34.19941 -33.60178 -32.32475 -30.75288 -29.75262 -28.29371 -27.10224 -25.62280 -22.77290 -22.58619 -21.80007 -21.44042 -20.18165 -18.62683 -18.55110 -17.68089 -17.27541 -17.06617 -16.65787 -16.47149 -15.98661 -15.73024 -15.62613 -14.91013 -14.56102 -14.51167 -14.17643 -14.09654 -13.89239 -13.73588 -13.52419 -13.42883 -13.30844 -13.15634 -12.99760 -12.89183 -12.76218 -12.66281 -12.43600 -12.27074 -12.07610 -12.04335 -11.76652 -11.68224 -11.58628 -11.35417 -11.11530 -10.57401 -10.49530 -9.67482 -9.40332 -8.22722 -6.33531 -0.75117 0.47364 0.51011 1.40047 1.40582 1.51961 1.72536 2.39548 2.70293 2.87052 3.10905 3.20763 3.28644 3.52449 3.69849 3.87187 3.88396 3.99777 4.15488 4.20277 4.24180 4.32278 4.36940 4.61433 4.64293 4.74218 4.75159 4.79049 4.83328 4.86429 4.97487 4.99214 5.05611 5.20437 5.23766 5.29298 5.42969 5.45642 5.58295 5.63161 5.65782 5.75040 5.79453 6.07176 6.15223 6.19797 6.81986 7.35763 8.88663 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.003307 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.244342 B = 8463.599067 C = 9648.719610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.175 3.825 3 N -1.096 6.096 4 S 2.627 3.373 5 O -0.997 6.997 6 O -0.975 6.975 7 C -0.614 4.614 8 C -0.104 4.104 9 C 0.033 3.967 10 C -0.552 4.552 11 H 0.060 0.940 12 C 0.004 3.996 13 N -0.929 5.929 14 Si 0.961 3.039 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.118 4.118 19 C -0.104 4.104 20 C -0.127 4.127 21 C -0.128 4.128 22 C -0.127 4.127 23 C -0.113 4.113 24 C -0.107 4.107 25 C -0.071 4.071 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.424 0.576 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.005 0.995 35 H 0.001 0.999 36 H 0.265 0.735 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.096 0.904 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 -12.319 -20.608 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.087 3.913 3 N -0.856 5.856 4 S 2.722 3.278 5 O -0.987 6.987 6 O -0.965 6.965 7 C -0.744 4.744 8 C -0.143 4.143 9 C -0.005 4.005 10 C -0.591 4.591 11 H 0.078 0.922 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.786 3.214 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.190 1.190 18 C -0.157 4.157 19 C -0.104 4.104 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.131 4.131 24 C -0.107 4.107 25 C -0.109 4.109 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.261 0.739 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.023 0.977 35 H 0.020 0.980 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.100 0.900 39 H 0.138 0.862 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.114 0.886 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.563 -11.641 -20.726 24.414 hybrid contribution 0.500 0.145 1.434 1.526 sum 6.063 -11.496 -19.292 23.261 Atomic orbital electron populations 1.22529 0.91471 1.04653 1.04600 1.20861 0.94100 0.80270 0.96116 1.55410 1.45786 1.21706 1.62738 1.04333 0.73666 0.72985 0.76814 1.93525 1.69779 1.49235 1.86197 1.93577 1.37539 1.86475 1.78877 1.30713 1.11995 1.10853 1.20873 1.21301 1.00781 0.96040 0.96164 1.18939 0.95840 0.95586 0.90156 1.21739 1.43148 1.01533 0.92630 0.92222 1.25910 0.95392 0.97860 1.00283 1.70062 1.48204 1.24490 1.14119 0.85502 0.78603 0.79389 0.77920 1.19645 1.20586 1.18978 1.22026 0.95370 0.99866 0.98411 1.20610 0.95869 0.99016 0.94951 1.20899 0.93993 0.99251 1.00396 1.21318 0.98471 0.99795 0.95049 1.21356 0.99015 0.99795 0.94309 1.20903 0.93069 0.98296 1.00823 1.20739 0.96545 0.99420 0.94030 1.21335 0.94121 0.98777 0.96649 0.88282 0.91956 0.90376 0.73946 0.83439 0.83946 0.91758 0.91378 0.97654 0.98043 0.92649 0.87291 0.90032 0.86184 0.84495 0.83821 0.84260 0.88595 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 7.19 71.98 0.52 -2.69 16 2 C 0.18 3.13 1.05 4.52 0.00 3.14 16 3 N -1.10 -22.80 5.48 -148.58 -0.81 -23.61 16 4 S 2.63 75.24 5.01 -56.49 -0.28 74.96 16 5 O -1.00 -35.42 18.08 -127.65 -2.31 -37.73 16 6 O -0.97 -31.45 14.73 -127.65 -1.88 -33.33 16 7 C -0.61 -18.56 4.24 71.98 0.31 -18.26 16 8 C -0.10 -4.20 5.16 30.60 0.16 -4.04 16 9 C 0.03 1.69 4.97 29.85 0.15 1.84 16 10 C -0.55 -31.38 9.11 25.60 0.23 -31.15 16 11 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 12 C 0.00 0.22 5.46 84.65 0.46 0.68 16 13 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 14 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 C -0.12 -2.25 5.50 30.52 0.17 -2.08 16 19 C -0.10 -2.07 6.14 -19.59 -0.12 -2.19 16 20 C -0.13 -2.56 10.04 22.30 0.22 -2.33 16 21 C -0.13 -2.19 10.05 22.24 0.22 -1.97 16 22 C -0.13 -1.89 10.05 22.24 0.22 -1.67 16 23 C -0.11 -1.70 10.04 22.30 0.22 -1.48 16 24 C -0.11 -1.83 6.14 -19.60 -0.12 -1.95 16 25 C -0.07 -0.98 5.92 30.52 0.18 -0.80 16 26 H 0.10 1.29 8.06 -2.39 -0.02 1.28 16 27 H 0.06 1.37 5.25 -2.39 -0.01 1.36 16 28 H 0.08 1.47 7.98 -2.38 -0.02 1.45 16 29 H 0.42 7.58 8.65 -96.75 -0.84 6.74 16 30 H 0.15 3.88 6.75 -2.39 -0.02 3.87 16 31 H 0.14 3.91 7.42 -2.39 -0.02 3.89 16 32 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.11 1.78 7.85 -2.38 -0.02 1.77 16 38 H 0.08 1.68 5.05 -2.39 -0.01 1.67 16 39 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.10 1.14 8.03 -2.39 -0.02 1.12 16 44 H 0.11 1.19 7.90 -2.39 -0.02 1.17 16 Total: -1.00 -73.86 362.27 0.02 -73.83 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.17 Total: 19.86 kcal Atomic # 6 Polarization: -67.77 SS G_CDS: 2.83 Total: -64.94 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -0.53 Total: -78.83 kcal Atomic # 8 Polarization: -66.87 SS G_CDS: -4.19 Total: -71.06 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 75.24 SS G_CDS: -0.28 Total: 74.96 kcal Total: -73.86 0.02 -73.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092268304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.616 kcal (2) G-P(sol) polarization free energy of solvation -73.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds