Wall clock time and date at job start Tue Mar 31 2020 13:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 115.55078 * 2 1 4 4 C 1.53003 * 117.49519 * 145.67265 * 2 1 3 5 5 N 1.46500 * 117.49363 * 214.97711 * 4 2 1 6 6 S 1.65604 * 119.99986 * 145.08640 * 5 4 2 7 7 O 1.42096 * 106.39845 * 311.46104 * 6 5 4 8 8 O 1.42094 * 106.40317 * 178.53764 * 6 5 4 9 9 C 1.76205 * 107.21584 * 64.99746 * 6 5 4 10 10 C 1.38631 * 119.74958 * 269.73359 * 9 6 5 11 11 C 1.37624 * 120.24515 * 179.72589 * 10 9 6 12 12 C 1.40707 * 119.74344 * 0.56271 * 11 10 9 13 13 C 1.41396 * 120.24236 * 179.68392 * 12 11 10 14 14 H 1.08001 * 120.00158 * 155.30952 * 13 12 11 15 15 C 1.39945 * 120.00430 * 335.31445 * 13 12 11 16 16 N 1.30828 * 119.99531 * 342.23374 * 15 13 12 17 17 Si 1.86794 * 120.00549 * 162.22862 * 15 13 12 18 18 H 1.48502 * 109.46946 * 94.66342 * 17 15 13 19 19 H 1.48500 * 109.47366 * 214.66197 * 17 15 13 20 20 H 1.48505 * 109.47273 * 334.66652 * 17 15 13 21 21 C 1.40715 * 119.51392 * 359.70684 * 12 11 10 22 22 C 1.37612 * 119.74513 * 0.02562 * 21 12 11 23 23 C 1.53003 * 60.03075 * 107.47544 * 4 2 1 24 24 C 1.53003 * 117.49792 * 107.49989 * 23 4 2 25 25 C 1.52997 * 117.49783 * 252.51709 * 23 4 2 26 26 H 1.08999 * 109.46614 * 325.72428 * 1 2 3 27 27 H 1.09002 * 109.46709 * 85.72189 * 1 2 3 28 28 H 1.08996 * 109.47315 * 205.72351 * 1 2 3 29 29 H 1.09004 * 109.47019 * 154.28063 * 3 2 1 30 30 H 1.09000 * 109.47110 * 274.27791 * 3 2 1 31 31 H 1.09000 * 109.47277 * 34.27532 * 3 2 1 32 32 H 1.08991 * 117.50231 * 359.97244 * 4 2 1 33 33 H 0.96999 * 120.00500 * 325.08769 * 5 4 2 34 34 H 1.08004 * 119.87617 * 359.97031 * 10 9 6 35 35 H 1.07997 * 120.12434 * 180.27117 * 11 10 9 36 36 H 0.96995 * 120.00034 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.12819 * 179.97438 * 21 12 11 38 38 H 1.08004 * 119.88000 * 179.97438 * 22 21 12 39 39 H 1.09000 * 109.46921 * 111.38570 * 24 23 4 40 40 H 1.08993 * 109.46964 * 231.38953 * 24 23 4 41 41 H 1.09003 * 109.47429 * 351.38880 * 24 23 4 42 42 H 1.09002 * 109.47042 * 8.60872 * 25 23 4 43 43 H 1.08999 * 109.46955 * 128.61088 * 25 23 4 44 44 H 1.08998 * 109.47295 * 248.61281 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1208 0.7654 5 7 3.4932 -0.7902 1.4417 6 16 3.8732 -1.5128 2.8825 7 8 2.7215 -1.3949 3.7064 8 8 5.1505 -1.0152 3.2564 9 6 4.0830 -3.2330 2.5639 10 6 2.9964 -4.0883 2.6616 11 6 3.1475 -5.4328 2.4095 12 6 4.4134 -5.9400 2.0629 13 6 4.5820 -7.3206 1.8082 14 1 5.3929 -7.6587 1.1801 15 6 3.6982 -8.2489 2.3698 16 7 2.9472 -7.9059 3.3846 17 14 3.5906 -9.9777 1.6706 18 1 4.4816 -10.8804 2.4430 19 1 2.1907 -10.4639 1.7656 20 1 4.0142 -9.9633 0.2473 21 6 5.5104 -5.0634 1.9722 22 6 5.3348 -3.7218 2.2232 23 6 2.2366 -1.1221 -0.7647 24 6 3.5494 -0.7781 -1.4712 25 6 1.3588 -2.1576 -1.4703 26 1 -0.3632 0.8492 0.5788 27 1 -0.3633 0.0767 -1.0248 28 1 -0.3634 -0.9258 0.4460 29 1 3.1820 1.3088 0.4460 30 1 2.2775 1.7412 -1.0248 31 1 1.5805 2.0744 0.5787 32 1 1.6112 -1.8578 1.2692 33 1 4.1028 -0.1480 1.0456 34 1 2.0268 -3.6974 2.9329 35 1 2.2988 -6.0966 2.4820 36 1 2.3348 -8.5494 3.7742 37 1 6.4865 -5.4421 1.7073 38 1 6.1754 -3.0471 2.1546 39 1 3.9368 -1.6662 -1.9706 40 1 3.3710 0.0045 -2.2085 41 1 4.2758 -0.4277 -0.7379 42 1 0.7294 -2.6610 -0.7364 43 1 0.7296 -1.6588 -2.2074 44 1 1.9920 -2.8909 -1.9698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092818693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:21 Heat of formation + Delta-G solvation = -51.782269 kcal Electronic energy + Delta-G solvation = -25928.211899 eV Core-core repulsion = 22358.198978 eV Total energy + Delta-G solvation = -3570.012921 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.63818 -37.56975 -36.47520 -35.12974 -34.03886 -32.93073 -31.14790 -30.26002 -29.46842 -28.59922 -26.60681 -26.26364 -25.81350 -21.52902 -21.17082 -20.33111 -18.99571 -17.76205 -17.62244 -17.17899 -16.55420 -15.98840 -15.51314 -14.77430 -14.51730 -14.15310 -14.12921 -13.62062 -13.41146 -13.20810 -12.72588 -12.58778 -12.53996 -12.42627 -12.27000 -12.19324 -12.01389 -11.80668 -11.76546 -11.54089 -11.50620 -11.44186 -11.36967 -11.30580 -11.22790 -11.02485 -10.86006 -10.78345 -10.43265 -9.74331 -9.55641 -9.46792 -9.28420 -8.54084 -7.95189 -7.70044 -7.14033 -4.79876 1.22456 2.26017 2.86842 2.88852 2.92662 2.95319 3.63760 3.67192 3.72377 4.23181 4.51641 4.65426 4.71551 4.77343 5.06256 5.16179 5.23636 5.34348 5.44819 5.50311 5.57974 5.70781 5.77070 5.83770 5.89568 5.97036 5.98678 6.02061 6.05837 6.06534 6.09447 6.11587 6.31628 6.43929 6.47962 6.67929 6.71257 6.90758 7.05205 7.25777 7.34516 7.42899 7.63198 7.76857 7.97139 8.31821 8.51466 8.65212 9.77583 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.004059 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.688328 B = 6896.308518 C = 7723.740854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.135 4.135 3 C -0.113 4.113 4 C 0.116 3.884 5 N -1.094 6.094 6 S 2.692 3.308 7 O -0.981 6.981 8 O -0.986 6.986 9 C -0.784 4.784 10 C -0.016 4.016 11 C -0.182 4.182 12 C 0.141 3.859 13 C -0.436 4.436 14 H 0.087 0.913 15 C 0.073 3.927 16 N -0.765 5.765 17 Si 0.916 3.084 18 H -0.266 1.266 19 H -0.271 1.271 20 H -0.257 1.257 21 C -0.239 4.239 22 C 0.003 3.997 23 C -0.129 4.129 24 C -0.113 4.113 25 C -0.113 4.113 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.134 0.866 33 H 0.408 0.592 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.289 0.711 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 9.281 -9.055 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.138 4.138 3 C -0.170 4.170 4 C 0.007 3.993 5 N -0.847 5.847 6 S 2.792 3.208 7 O -0.971 6.971 8 O -0.976 6.976 9 C -0.880 4.880 10 C -0.036 4.036 11 C -0.202 4.202 12 C 0.137 3.863 13 C -0.464 4.464 14 H 0.105 0.895 15 C -0.149 4.149 16 N -0.387 5.387 17 Si 0.739 3.261 18 H -0.191 1.191 19 H -0.196 1.196 20 H -0.180 1.180 21 C -0.259 4.259 22 C -0.017 4.017 23 C -0.131 4.131 24 C -0.170 4.170 25 C -0.170 4.170 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.152 0.848 33 H 0.244 0.756 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.313 9.556 -7.933 13.147 hybrid contribution 0.263 -1.220 -0.737 1.450 sum -4.051 8.336 -8.670 12.691 Atomic orbital electron populations 1.21307 0.91875 1.02220 1.01544 1.22174 0.94961 0.91823 1.04816 1.21255 1.00330 0.94053 1.01394 1.21710 0.86791 0.99772 0.91021 1.55492 1.28191 1.57797 1.43197 1.01265 0.72603 0.74724 0.72244 1.93494 1.51424 1.87323 1.64839 1.93493 1.41874 1.81117 1.81140 1.29091 1.01705 1.20723 1.36503 1.20234 0.95103 0.94091 0.94179 1.21317 0.97853 0.93560 1.07477 1.17834 0.90892 0.92775 0.84779 1.19931 1.10622 0.91084 1.24730 0.89493 1.26132 0.93442 1.02192 0.93178 1.69826 1.16673 1.37335 1.14906 0.86162 0.78859 0.80291 0.80825 1.19110 1.19580 1.18008 1.21013 0.97768 0.93496 1.13638 1.20137 0.93581 0.95566 0.92384 1.22133 0.97965 0.99102 0.93915 1.21253 0.94683 1.01470 0.99618 1.21308 0.98711 0.97042 0.99941 0.92242 0.92269 0.92112 0.92416 0.92369 0.92173 0.84830 0.75620 0.88021 0.86065 0.89963 0.88255 0.87912 0.91873 0.92537 0.92387 0.92136 0.92420 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 8.88 37.16 0.33 -0.81 16 2 C -0.14 -1.56 2.70 -154.47 -0.42 -1.98 16 3 C -0.11 -1.16 8.82 37.16 0.33 -0.83 16 4 C 0.12 1.64 5.71 -67.93 -0.39 1.25 16 5 N -1.09 -16.52 5.13 -4.89 -0.03 -16.54 16 6 S 2.69 52.20 5.71 -107.50 -0.61 51.58 16 7 O -0.98 -21.24 17.01 -57.17 -0.97 -22.21 16 8 O -0.99 -21.02 17.26 -57.17 -0.99 -22.00 16 9 C -0.78 -17.17 5.97 -39.29 -0.23 -17.41 16 10 C -0.02 -0.36 9.49 -39.66 -0.38 -0.74 16 11 C -0.18 -4.49 8.70 -38.87 -0.34 -4.82 16 12 C 0.14 3.54 5.57 -106.83 -0.60 2.95 16 13 C -0.44 -10.64 9.05 -37.74 -0.34 -10.98 16 14 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 15 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 16 N -0.77 -18.27 10.97 55.55 0.61 -17.66 16 17 Si 0.92 16.88 29.59 -169.99 -5.03 11.85 16 18 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 19 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 20 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 21 C -0.24 -5.63 9.80 -38.88 -0.38 -6.01 16 22 C 0.00 0.08 9.49 -39.66 -0.38 -0.30 16 23 C -0.13 -1.54 2.70 -154.47 -0.42 -1.96 16 24 C -0.11 -1.25 8.82 37.16 0.33 -0.93 16 25 C -0.11 -1.26 8.88 37.16 0.33 -0.93 16 26 H 0.06 0.57 7.92 -51.93 -0.41 0.15 16 27 H 0.06 0.52 8.02 -51.93 -0.42 0.11 16 28 H 0.06 0.63 7.78 -51.93 -0.40 0.22 16 29 H 0.06 0.60 5.80 -51.93 -0.30 0.30 16 30 H 0.06 0.52 8.03 -51.93 -0.42 0.11 16 31 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 32 H 0.13 2.00 7.92 -51.93 -0.41 1.59 16 33 H 0.41 5.28 5.49 -34.47 -0.19 5.09 16 34 H 0.10 2.15 7.59 -52.48 -0.40 1.75 16 35 H 0.12 3.03 6.18 -52.49 -0.32 2.70 16 36 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 37 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 38 H 0.10 2.08 7.60 -52.48 -0.40 1.68 16 39 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 40 H 0.06 0.54 8.02 -51.93 -0.42 0.12 16 41 H 0.06 0.64 5.78 -51.93 -0.30 0.34 16 42 H 0.06 0.69 7.78 -51.93 -0.40 0.28 16 43 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 44 H 0.06 0.72 7.92 -51.93 -0.41 0.30 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -29.52 366.66 -10.55 -40.06 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.41 Total: 11.30 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: -2.64 Total: -41.91 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.58 Total: -34.20 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.96 Total: -44.21 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Atomic # 16 Polarization: 52.20 SS G_CDS: -0.61 Total: 51.58 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.52 -10.55 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092818693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.718 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds