Wall clock time and date at job start Tue Mar 31 2020 13:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 115.55078 * 2 1 4 4 C 1.53003 * 117.49519 * 145.67265 * 2 1 3 5 5 N 1.46500 * 117.49363 * 214.97711 * 4 2 1 6 6 S 1.65604 * 119.99986 * 145.08640 * 5 4 2 7 7 O 1.42096 * 106.39845 * 311.46104 * 6 5 4 8 8 O 1.42094 * 106.40317 * 178.53764 * 6 5 4 9 9 C 1.76205 * 107.21584 * 64.99746 * 6 5 4 10 10 C 1.38631 * 119.74958 * 269.73359 * 9 6 5 11 11 C 1.37624 * 120.24515 * 179.72589 * 10 9 6 12 12 C 1.40707 * 119.74344 * 0.56271 * 11 10 9 13 13 C 1.41396 * 120.24236 * 179.68392 * 12 11 10 14 14 H 1.08001 * 120.00158 * 155.30952 * 13 12 11 15 15 C 1.39945 * 120.00430 * 335.31445 * 13 12 11 16 16 N 1.30828 * 119.99531 * 342.23374 * 15 13 12 17 17 Si 1.86794 * 120.00549 * 162.22862 * 15 13 12 18 18 H 1.48502 * 109.46946 * 94.66342 * 17 15 13 19 19 H 1.48500 * 109.47366 * 214.66197 * 17 15 13 20 20 H 1.48505 * 109.47273 * 334.66652 * 17 15 13 21 21 C 1.40715 * 119.51392 * 359.70684 * 12 11 10 22 22 C 1.37612 * 119.74513 * 0.02562 * 21 12 11 23 23 C 1.53003 * 60.03075 * 107.47544 * 4 2 1 24 24 C 1.53003 * 117.49792 * 107.49989 * 23 4 2 25 25 C 1.52997 * 117.49783 * 252.51709 * 23 4 2 26 26 H 1.08999 * 109.46614 * 325.72428 * 1 2 3 27 27 H 1.09002 * 109.46709 * 85.72189 * 1 2 3 28 28 H 1.08996 * 109.47315 * 205.72351 * 1 2 3 29 29 H 1.09004 * 109.47019 * 154.28063 * 3 2 1 30 30 H 1.09000 * 109.47110 * 274.27791 * 3 2 1 31 31 H 1.09000 * 109.47277 * 34.27532 * 3 2 1 32 32 H 1.08991 * 117.50231 * 359.97244 * 4 2 1 33 33 H 0.96999 * 120.00500 * 325.08769 * 5 4 2 34 34 H 1.08004 * 119.87617 * 359.97031 * 10 9 6 35 35 H 1.07997 * 120.12434 * 180.27117 * 11 10 9 36 36 H 0.96995 * 120.00034 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.12819 * 179.97438 * 21 12 11 38 38 H 1.08004 * 119.88000 * 179.97438 * 22 21 12 39 39 H 1.09000 * 109.46921 * 111.38570 * 24 23 4 40 40 H 1.08993 * 109.46964 * 231.38953 * 24 23 4 41 41 H 1.09003 * 109.47429 * 351.38880 * 24 23 4 42 42 H 1.09002 * 109.47042 * 8.60872 * 25 23 4 43 43 H 1.08999 * 109.46955 * 128.61088 * 25 23 4 44 44 H 1.08998 * 109.47295 * 248.61281 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1208 0.7654 5 7 3.4932 -0.7902 1.4417 6 16 3.8732 -1.5128 2.8825 7 8 2.7215 -1.3949 3.7064 8 8 5.1505 -1.0152 3.2564 9 6 4.0830 -3.2330 2.5639 10 6 2.9964 -4.0883 2.6616 11 6 3.1475 -5.4328 2.4095 12 6 4.4134 -5.9400 2.0629 13 6 4.5820 -7.3206 1.8082 14 1 5.3929 -7.6587 1.1801 15 6 3.6982 -8.2489 2.3698 16 7 2.9472 -7.9059 3.3846 17 14 3.5906 -9.9777 1.6706 18 1 4.4816 -10.8804 2.4430 19 1 2.1907 -10.4639 1.7656 20 1 4.0142 -9.9633 0.2473 21 6 5.5104 -5.0634 1.9722 22 6 5.3348 -3.7218 2.2232 23 6 2.2366 -1.1221 -0.7647 24 6 3.5494 -0.7781 -1.4712 25 6 1.3588 -2.1576 -1.4703 26 1 -0.3632 0.8492 0.5788 27 1 -0.3633 0.0767 -1.0248 28 1 -0.3634 -0.9258 0.4460 29 1 3.1820 1.3088 0.4460 30 1 2.2775 1.7412 -1.0248 31 1 1.5805 2.0744 0.5787 32 1 1.6112 -1.8578 1.2692 33 1 4.1028 -0.1480 1.0456 34 1 2.0268 -3.6974 2.9329 35 1 2.2988 -6.0966 2.4820 36 1 2.3348 -8.5494 3.7742 37 1 6.4865 -5.4421 1.7073 38 1 6.1754 -3.0471 2.1546 39 1 3.9368 -1.6662 -1.9706 40 1 3.3710 0.0045 -2.2085 41 1 4.2758 -0.4277 -0.7379 42 1 0.7294 -2.6610 -0.7364 43 1 0.7296 -1.6588 -2.2074 44 1 1.9920 -2.8909 -1.9698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092818693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:20 Heat of formation + Delta-G solvation = -68.642703 kcal Electronic energy + Delta-G solvation = -25928.943022 eV Core-core repulsion = 22358.198978 eV Total energy + Delta-G solvation = -3570.744045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.62125 -39.38012 -38.15536 -36.81927 -35.80688 -34.15037 -32.08419 -31.99811 -31.29726 -29.45155 -27.63296 -27.58176 -27.09427 -23.31749 -22.97466 -21.44902 -20.48665 -19.42738 -18.75697 -18.63810 -18.14557 -17.25723 -17.20219 -16.16897 -15.84108 -15.55129 -15.20666 -15.19028 -14.95538 -14.51784 -14.12146 -14.00921 -13.65615 -13.55883 -13.45183 -13.35963 -13.17299 -13.10501 -13.06937 -12.98078 -12.91184 -12.87308 -12.83931 -12.62104 -12.56438 -12.41284 -12.20804 -11.97601 -11.65378 -11.54671 -11.27386 -11.18535 -10.24109 -9.80028 -9.64055 -9.54367 -8.87225 -6.64919 -0.35032 0.48666 1.05831 1.35738 1.41772 1.52854 2.10975 2.19034 2.51520 2.73036 2.94768 3.50512 3.54246 3.71599 3.80976 3.85261 4.14954 4.25890 4.26402 4.29538 4.33523 4.63742 4.79616 4.85645 4.89593 4.91819 4.94194 5.02308 5.03874 5.09315 5.10079 5.13624 5.15444 5.21384 5.24127 5.24355 5.45844 5.46261 5.52286 5.59386 5.59788 5.75944 5.92904 6.12146 6.16090 6.48924 6.68406 6.81094 8.08166 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.004059 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.688328 B = 6896.308518 C = 7723.740854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.117 4.117 3 C -0.117 4.117 4 C 0.077 3.923 5 N -1.076 6.076 6 S 2.725 3.275 7 O -1.002 7.002 8 O -1.002 7.002 9 C -0.793 4.793 10 C -0.018 4.018 11 C -0.204 4.204 12 C 0.114 3.886 13 C -0.467 4.467 14 H 0.092 0.908 15 C 0.035 3.965 16 N -0.799 5.799 17 Si 0.991 3.009 18 H -0.260 1.260 19 H -0.263 1.263 20 H -0.253 1.253 21 C -0.256 4.256 22 C -0.001 4.001 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.114 4.114 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.421 0.579 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.298 0.702 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 10.198 -10.644 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.120 4.120 3 C -0.174 4.174 4 C -0.032 4.032 5 N -0.835 5.835 6 S 2.821 3.179 7 O -0.992 6.992 8 O -0.993 6.993 9 C -0.886 4.886 10 C -0.038 4.038 11 C -0.224 4.224 12 C 0.110 3.890 13 C -0.493 4.493 14 H 0.110 0.890 15 C -0.184 4.184 16 N -0.422 5.422 17 Si 0.810 3.190 18 H -0.184 1.184 19 H -0.187 1.187 20 H -0.176 1.176 21 C -0.277 4.277 22 C -0.021 4.021 23 C -0.125 4.125 24 C -0.173 4.173 25 C -0.172 4.172 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.260 0.740 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.663 10.462 -9.522 14.895 hybrid contribution 0.344 -1.357 -0.249 1.422 sum -4.319 9.105 -9.771 14.037 Atomic orbital electron populations 1.21375 0.90824 1.02246 1.02809 1.22307 0.95751 0.91869 1.02064 1.21341 1.00105 0.93224 1.02769 1.21928 0.86681 1.02075 0.92471 1.54946 1.29010 1.57273 1.42241 1.00271 0.71670 0.73390 0.72558 1.93465 1.52205 1.87229 1.66333 1.93462 1.42854 1.80890 1.82089 1.29556 1.01249 1.22705 1.35089 1.20405 0.96065 0.93734 0.93615 1.21326 0.97691 0.94224 1.09204 1.18177 0.91455 0.93798 0.85568 1.20230 1.11939 0.91440 1.25739 0.88998 1.27020 0.92385 1.06148 0.92850 1.69864 1.17272 1.39172 1.15897 0.85048 0.79183 0.74780 0.79979 1.18443 1.18680 1.17625 1.21243 0.98019 0.94091 1.14299 1.20422 0.94438 0.95528 0.91718 1.22234 0.98637 0.99425 0.92180 1.21305 0.94024 1.01979 0.99960 1.21343 0.98729 0.96957 1.00138 0.91480 0.90454 0.92820 0.92727 0.90476 0.91470 0.86369 0.74036 0.86961 0.87178 0.89056 0.87140 0.85853 0.92387 0.90406 0.92529 0.92910 0.90273 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 8.88 71.98 0.64 -1.44 16 2 C -0.12 -2.45 2.70 -52.16 -0.14 -2.59 16 3 C -0.12 -2.06 8.82 71.98 0.64 -1.43 16 4 C 0.08 2.10 5.71 44.99 0.26 2.36 16 5 N -1.08 -31.41 5.13 -169.39 -0.87 -32.28 16 6 S 2.73 104.51 5.71 -56.49 -0.32 104.19 16 7 O -1.00 -43.25 17.01 -128.00 -2.18 -45.42 16 8 O -1.00 -41.83 17.26 -128.00 -2.21 -44.04 16 9 C -0.79 -35.05 5.97 22.46 0.13 -34.92 16 10 C -0.02 -0.86 9.49 22.22 0.21 -0.64 16 11 C -0.20 -10.48 8.70 22.73 0.20 -10.28 16 12 C 0.11 5.90 5.57 -21.29 -0.12 5.78 16 13 C -0.47 -23.33 9.05 23.46 0.21 -23.12 16 14 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 15 C 0.04 1.64 5.14 85.26 0.44 2.07 16 16 N -0.80 -39.05 10.97 21.83 0.24 -38.81 16 17 Si 0.99 34.45 29.59 68.60 2.03 36.48 16 18 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 19 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 20 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 21 C -0.26 -12.33 9.80 22.73 0.22 -12.11 16 22 C 0.00 -0.06 9.49 22.22 0.21 0.15 16 23 C -0.12 -2.73 2.70 -52.16 -0.14 -2.87 16 24 C -0.12 -2.31 8.82 71.98 0.64 -1.67 16 25 C -0.11 -2.41 8.88 71.98 0.64 -1.77 16 26 H 0.07 1.11 7.92 -2.39 -0.02 1.09 16 27 H 0.08 1.13 8.02 -2.39 -0.02 1.11 16 28 H 0.05 1.04 7.78 -2.39 -0.02 1.03 16 29 H 0.05 0.99 5.80 -2.38 -0.01 0.98 16 30 H 0.08 1.09 8.03 -2.39 -0.02 1.07 16 31 H 0.07 1.10 7.92 -2.39 -0.02 1.08 16 32 H 0.12 3.59 7.92 -2.39 -0.02 3.57 16 33 H 0.42 10.19 5.49 -96.75 -0.53 9.66 16 34 H 0.11 4.90 7.59 -2.91 -0.02 4.88 16 35 H 0.11 5.78 6.18 -2.91 -0.02 5.76 16 36 H 0.30 12.95 8.30 -92.71 -0.77 12.18 16 37 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.12 4.92 7.60 -2.91 -0.02 4.90 16 39 H 0.06 1.22 7.92 -2.39 -0.02 1.20 16 40 H 0.08 1.23 8.02 -2.39 -0.02 1.21 16 41 H 0.06 1.14 5.78 -2.39 -0.01 1.12 16 42 H 0.05 1.18 7.78 -2.39 -0.02 1.16 16 43 H 0.08 1.32 8.02 -2.39 -0.02 1.30 16 44 H 0.06 1.25 7.92 -2.39 -0.02 1.23 16 Total: -1.00 -63.72 366.66 1.20 -62.52 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: 0.48 Total: 39.85 kcal Atomic # 6 Polarization: -86.51 SS G_CDS: 4.03 Total: -82.48 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -0.63 Total: -71.09 kcal Atomic # 8 Polarization: -85.08 SS G_CDS: -4.39 Total: -89.46 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 2.03 Total: 36.48 kcal Atomic # 16 Polarization: 104.51 SS G_CDS: -0.32 Total: 104.19 kcal Total: -63.72 1.20 -62.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092818693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.119 kcal (2) G-P(sol) polarization free energy of solvation -63.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds