Wall clock time and date at job start Tue Mar 31 2020 13:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 110.72897 * 2 1 4 4 N 1.46497 * 109.47252 * 303.40608 * 3 2 1 5 5 S 1.65598 * 119.99717 * 165.00144 * 4 3 2 6 6 O 1.42101 * 104.27698 * 181.07102 * 5 4 3 7 7 O 1.42101 * 104.28087 * 308.92748 * 5 4 3 8 8 C 1.81397 * 104.45236 * 65.00256 * 5 4 3 9 9 C 1.53004 * 109.47546 * 179.97438 * 8 5 4 10 10 C 1.50697 * 109.47400 * 179.97438 * 9 8 5 11 11 H 1.08009 * 119.99924 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00157 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99725 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00229 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46708 * 60.00109 * 14 12 10 16 16 H 1.48491 * 109.47351 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47333 * 300.00543 * 14 12 10 18 18 C 1.54349 * 110.99263 * 236.47444 * 2 1 3 19 19 C 1.51367 * 105.17435 * 268.04687 * 18 2 1 20 20 C 1.38498 * 130.39583 * 162.81453 * 19 18 2 21 21 C 1.38101 * 120.21560 * 180.25933 * 20 19 18 22 22 C 1.38260 * 119.93599 * 359.47094 * 21 20 19 23 23 C 1.38104 * 119.92876 * 0.52466 * 22 21 20 24 24 C 1.38216 * 109.75567 * 342.81285 * 19 18 2 25 25 C 1.51368 * 109.76149 * 359.97438 * 24 19 18 26 26 H 1.08995 * 109.46924 * 296.59426 * 1 2 3 27 27 H 1.09001 * 109.47225 * 56.58981 * 1 2 3 28 28 H 1.08999 * 109.47340 * 176.59095 * 1 2 3 29 29 H 1.08996 * 109.47138 * 63.41140 * 3 2 1 30 30 H 1.09005 * 109.46907 * 183.40538 * 3 2 1 31 31 H 0.96997 * 120.00220 * 344.99584 * 4 3 2 32 32 H 1.09002 * 109.47192 * 299.99964 * 8 5 4 33 33 H 1.09004 * 109.47464 * 59.99577 * 8 5 4 34 34 H 1.08998 * 109.46479 * 300.00095 * 9 8 5 35 35 H 1.08999 * 109.46546 * 59.99526 * 9 8 5 36 36 H 0.97000 * 119.99758 * 179.97438 * 13 12 10 37 37 H 1.09002 * 110.30690 * 149.11882 * 18 2 1 38 38 H 1.09004 * 110.30121 * 26.96861 * 18 2 1 39 39 H 1.08002 * 119.88925 * 359.97438 * 20 19 18 40 40 H 1.07991 * 120.03467 * 179.74809 * 21 20 19 41 41 H 1.07998 * 120.03297 * 180.24604 * 22 21 20 42 42 H 1.08004 * 119.89233 * 179.73032 * 23 22 21 43 43 H 1.08998 * 110.30609 * 136.11490 * 25 24 19 44 44 H 1.09000 * 110.30101 * 258.17493 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0715 1.4310 0.0000 4 7 1.5332 2.1569 -1.1530 5 16 1.6392 3.8083 -1.2148 6 8 1.0037 4.1548 -2.4376 7 8 1.1128 4.2402 0.0325 8 6 3.4195 4.1446 -1.3051 9 6 3.6506 5.6557 -1.3681 10 6 5.1296 5.9351 -1.4425 11 1 5.8343 5.1166 -1.4450 12 6 5.5831 7.2354 -1.5085 13 7 4.7249 8.2321 -1.5059 14 14 7.4164 7.5817 -1.6014 15 1 7.9796 6.9432 -2.8181 16 1 7.6406 9.0483 -1.6637 17 1 8.0863 7.0287 -0.3970 18 6 2.0829 -0.7959 -1.2013 19 6 2.2714 -2.2075 -0.6884 20 6 2.4323 -3.3985 -1.3767 21 6 2.5848 -4.5849 -0.6865 22 6 2.5878 -4.5834 0.6961 23 6 2.4275 -3.3967 1.3841 24 6 2.2689 -2.2066 0.6937 25 6 2.0792 -0.7943 1.2043 26 1 -0.3633 0.4600 0.9189 27 1 -0.3634 0.5659 -0.8578 28 1 -0.3634 -1.0258 -0.0611 29 1 1.7700 1.9336 0.9189 30 1 3.1596 1.4076 -0.0610 31 1 1.1147 1.6702 -1.8802 32 1 3.9113 3.7380 -0.4213 33 1 3.8328 3.6765 -2.1985 34 1 3.1588 6.0618 -2.2521 35 1 3.2372 6.1240 -0.4749 36 1 5.0440 9.1469 -1.5519 37 1 3.0376 -0.3800 -1.5235 38 1 1.3677 -0.7847 -2.0238 39 1 2.4340 -3.4001 -2.4567 40 1 2.7060 -5.5125 -1.2261 41 1 2.7109 -5.5097 1.2374 42 1 2.4256 -3.3967 2.4642 43 1 1.3612 -0.7817 2.0242 44 1 3.0326 -0.3790 1.5308 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093938714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:05 Heat of formation + Delta-G solvation = -92.258113 kcal Electronic energy + Delta-G solvation = -24832.277934 eV Core-core repulsion = 21260.509848 eV Total energy + Delta-G solvation = -3571.768086 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.34929 -38.39549 -38.03550 -36.96368 -35.86993 -35.06708 -33.09858 -32.28022 -31.32909 -28.26261 -27.73787 -27.54864 -26.18786 -23.56842 -22.60830 -21.85497 -20.31126 -20.19076 -19.04535 -18.21625 -17.48114 -17.03205 -17.02116 -16.52345 -16.31215 -16.11032 -15.88067 -15.31094 -15.01398 -14.90415 -14.57231 -14.45024 -14.02037 -13.83854 -13.70707 -13.50158 -13.24016 -13.13905 -13.06654 -12.97316 -12.88864 -12.80605 -12.75753 -12.20546 -12.14830 -12.03716 -11.93153 -11.76593 -11.70683 -11.61638 -11.57898 -11.15018 -10.62576 -10.29382 -9.66048 -9.35547 -8.24702 -6.38562 -0.62835 0.50178 0.53107 1.41618 1.44871 1.52996 1.90655 2.39047 2.85596 2.90017 3.08750 3.30489 3.40722 3.51253 3.86006 4.02000 4.07040 4.13158 4.19235 4.20295 4.22153 4.33983 4.54526 4.66175 4.69907 4.74538 4.79240 4.81838 4.87943 4.91066 4.98585 5.04358 5.11297 5.15426 5.30348 5.31202 5.32052 5.33661 5.42828 5.60557 5.66925 5.69996 5.80177 6.08017 6.16535 6.17612 6.75328 7.31578 8.87338 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.002768 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.445098 B =10111.709113 C =11057.332147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 C 0.118 3.882 4 N -1.105 6.105 5 S 2.624 3.376 6 O -1.001 7.001 7 O -0.997 6.997 8 C -0.589 4.589 9 C 0.020 3.980 10 C -0.539 4.539 11 H 0.076 0.924 12 C -0.005 4.005 13 N -0.935 5.935 14 Si 0.973 3.027 15 H -0.264 1.264 16 H -0.285 1.285 17 H -0.262 1.262 18 C -0.077 4.077 19 C -0.107 4.107 20 C -0.122 4.122 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.120 4.120 24 C -0.106 4.106 25 C -0.073 4.073 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.424 0.576 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.005 0.995 35 H 0.007 0.993 36 H 0.267 0.733 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.087 0.913 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 -27.411 4.025 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.060 4.060 3 C -0.007 4.007 4 N -0.867 5.867 5 S 2.720 3.280 6 O -0.991 6.991 7 O -0.986 6.986 8 C -0.721 4.721 9 C -0.019 4.019 10 C -0.578 4.578 11 H 0.094 0.906 12 C -0.203 4.203 13 N -0.574 5.574 14 Si 0.797 3.203 15 H -0.188 1.188 16 H -0.211 1.211 17 H -0.187 1.187 18 C -0.114 4.114 19 C -0.107 4.107 20 C -0.140 4.140 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.106 4.106 25 C -0.110 4.110 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.260 0.740 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.023 0.977 35 H 0.025 0.975 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.150 0.850 43 H 0.105 0.895 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.037 -26.538 4.189 27.335 hybrid contribution 1.074 0.232 -0.461 1.192 sum -3.963 -26.306 3.728 26.863 Atomic orbital electron populations 1.21806 0.93201 1.01909 1.02634 1.21301 0.96356 0.92597 0.95705 1.21608 0.99000 0.92031 0.88103 1.55241 1.75520 1.25097 1.30868 1.04333 0.77924 0.73100 0.72647 1.93502 1.74946 1.82880 1.47804 1.93500 1.77849 1.81250 1.46044 1.30346 1.23199 1.06108 1.12445 1.18813 0.98698 0.88101 0.96301 1.21509 0.92104 0.92931 1.51242 0.90553 1.26116 1.03539 0.96146 0.94485 1.70099 1.36722 0.99757 1.50865 0.85379 0.78482 0.77040 0.79449 1.18843 1.21098 1.18695 1.21241 1.02263 0.90197 0.97728 1.20769 0.99973 0.95327 0.94678 1.20896 1.00850 0.91710 1.00560 1.21331 1.00335 0.98343 0.94761 1.21340 1.00294 0.98442 0.94667 1.20900 1.00682 0.91575 1.00647 1.20747 0.99990 0.95364 0.94529 1.21146 1.02492 0.90019 0.97368 0.92052 0.92160 0.92145 0.90081 0.89375 0.73952 0.83825 0.83904 0.97682 0.97492 0.92436 0.89110 0.89799 0.85324 0.84240 0.84129 0.85023 0.89486 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.31 71.98 0.60 -1.66 16 2 C -0.06 -0.91 0.64 -51.26 -0.03 -0.94 16 3 C 0.12 2.18 4.94 86.38 0.43 2.61 16 4 N -1.11 -24.63 5.26 -187.49 -0.99 -25.61 16 5 S 2.62 88.90 5.46 -56.49 -0.31 88.59 16 6 O -1.00 -40.72 18.08 -127.65 -2.31 -43.03 16 7 O -1.00 -40.14 17.50 -127.65 -2.23 -42.38 16 8 C -0.59 -21.23 6.01 71.98 0.43 -20.80 16 9 C 0.02 1.02 4.98 29.85 0.15 1.17 16 10 C -0.54 -29.54 9.11 25.60 0.23 -29.30 16 11 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 12 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 13 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 14 Si 0.97 43.00 29.54 68.60 2.03 45.02 16 15 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 16 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 18 C -0.08 -1.18 5.40 30.52 0.16 -1.01 16 19 C -0.11 -1.83 6.14 -19.60 -0.12 -1.95 16 20 C -0.12 -1.94 10.04 22.30 0.22 -1.72 16 21 C -0.13 -1.83 10.05 22.24 0.22 -1.61 16 22 C -0.13 -1.79 10.05 22.24 0.22 -1.57 16 23 C -0.12 -1.83 10.04 22.30 0.22 -1.61 16 24 C -0.11 -1.77 6.14 -19.60 -0.12 -1.89 16 25 C -0.07 -1.07 5.86 30.52 0.18 -0.89 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.00 7.00 -2.39 -0.02 0.99 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.61 7.69 -2.39 -0.02 1.59 16 30 H 0.09 1.32 8.05 -2.38 -0.02 1.30 16 31 H 0.42 7.82 7.50 -96.75 -0.73 7.09 16 32 H 0.14 4.40 8.14 -2.39 -0.02 4.38 16 33 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 34 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.09 1.32 7.83 -2.39 -0.02 1.30 16 38 H 0.08 1.16 7.92 -2.38 -0.02 1.14 16 39 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.14 1.34 8.06 -2.92 -0.02 1.32 16 41 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 42 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.09 1.15 7.91 -2.39 -0.02 1.13 16 44 H 0.09 1.24 7.90 -2.39 -0.02 1.22 16 Total: -1.00 -76.18 372.53 0.00 -76.17 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.26 Total: 18.73 kcal Atomic # 6 Polarization: -64.23 SS G_CDS: 3.27 Total: -60.97 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -0.70 Total: -82.14 kcal Atomic # 8 Polarization: -80.86 SS G_CDS: -4.54 Total: -85.41 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 88.90 SS G_CDS: -0.31 Total: 88.59 kcal Total: -76.18 0.00 -76.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093938714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.086 kcal (2) G-P(sol) polarization free energy of solvation -76.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds