Wall clock time and date at job start Tue Mar 31 2020 14:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 110.01777 * 2 1 4 4 C 1.54267 * 110.03276 * 238.55760 * 2 1 3 5 5 C 1.54884 * 104.19913 * 217.10578 * 4 2 1 6 6 C 1.54896 * 102.74928 * 37.94310 * 5 4 2 7 7 C 1.53880 * 110.03267 * 121.39391 * 2 1 3 8 8 H 1.08996 * 110.03006 * 238.61641 * 7 2 1 9 9 N 1.46493 * 110.03131 * 359.97438 * 7 2 1 10 10 S 1.65602 * 119.99735 * 215.00056 * 9 7 2 11 11 O 1.42107 * 106.40203 * 178.54105 * 10 9 7 12 12 O 1.42095 * 106.40538 * 311.45890 * 10 9 7 13 13 C 1.76197 * 107.21793 * 65.00359 * 10 9 7 14 14 C 1.38641 * 119.74775 * 269.72550 * 13 10 9 15 15 C 1.37617 * 120.24682 * 179.72333 * 14 13 10 16 16 C 1.40712 * 119.74840 * 0.52422 * 15 14 13 17 17 C 1.41395 * 120.24664 * 179.72313 * 16 15 14 18 18 H 1.08001 * 119.99551 * 155.31195 * 17 16 15 19 19 C 1.39937 * 120.00043 * 335.31850 * 17 16 15 20 20 N 1.30827 * 120.00025 * 342.22577 * 19 17 16 21 21 Si 1.86802 * 120.00167 * 162.22866 * 19 17 16 22 22 H 1.48502 * 109.46910 * 94.66188 * 21 19 17 23 23 H 1.48500 * 109.47474 * 214.65964 * 21 19 17 24 24 H 1.48497 * 109.47147 * 334.66504 * 21 19 17 25 25 C 1.40715 * 119.50799 * 359.75309 * 16 15 14 26 26 C 1.37617 * 119.74694 * 359.97438 * 25 16 15 27 27 H 1.09005 * 109.47203 * 298.60783 * 1 2 3 28 28 H 1.08998 * 109.47432 * 178.60992 * 1 2 3 29 29 H 1.08998 * 109.47363 * 58.60934 * 1 2 3 30 30 H 1.08996 * 109.46982 * 60.70059 * 3 2 1 31 31 H 1.08994 * 109.47228 * 180.70059 * 3 2 1 32 32 H 1.08996 * 109.46875 * 300.70150 * 3 2 1 33 33 H 1.09006 * 110.48464 * 335.78733 * 4 2 1 34 34 H 1.08995 * 110.48519 * 98.42512 * 4 2 1 35 35 H 1.08999 * 110.75525 * 279.62639 * 5 4 2 36 36 H 1.09001 * 110.75972 * 156.25937 * 5 4 2 37 37 H 1.09002 * 110.48585 * 203.38512 * 6 5 4 38 38 H 1.08999 * 110.59645 * 80.79009 * 6 5 4 39 39 H 0.97000 * 120.00492 * 35.00193 * 9 7 2 40 40 H 1.08002 * 119.87357 * 359.97438 * 14 13 10 41 41 H 1.08002 * 120.12245 * 180.27780 * 15 14 13 42 42 H 0.97001 * 120.00019 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.12797 * 179.97438 * 25 16 15 44 44 H 1.08001 * 119.87353 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0584 -0.7560 -1.2365 5 6 3.3136 -1.5011 -0.7185 6 6 2.8874 -1.9404 0.7044 7 6 2.0571 -0.7531 1.2341 8 1 2.6860 -0.0944 1.8329 9 7 0.9359 -1.2437 2.0392 10 16 1.0588 -1.2873 3.6901 11 8 -0.1869 -1.7720 4.1726 12 8 2.3015 -1.9106 3.9838 13 6 1.1938 0.3788 4.2472 14 6 2.4452 0.9608 4.3792 15 6 2.5623 2.2632 4.8080 16 6 1.4064 3.0010 5.1235 17 6 1.5148 4.3380 5.5706 18 1 0.6892 5.0211 5.4357 19 6 2.6919 4.7762 6.1877 20 7 3.5435 3.9053 6.6650 21 14 3.0471 6.6046 6.3301 22 1 2.5821 7.0976 7.6515 23 1 4.5082 6.8365 6.2014 24 1 2.3332 7.3330 5.2509 25 6 0.1418 2.3982 4.9913 26 6 0.0482 1.0962 4.5553 27 1 -0.3634 0.4921 0.9022 28 1 -0.3634 -1.0273 -0.0249 29 1 -0.3634 0.5353 -0.8772 30 1 1.7055 1.9510 0.8962 31 1 3.1435 1.4272 -0.0126 32 1 1.6851 1.9585 -0.8836 33 1 1.3141 -1.4667 -1.5960 34 1 2.3296 -0.0545 -2.0254 35 1 4.1709 -0.8294 -0.6749 36 1 3.5325 -2.3685 -1.3413 37 1 3.7637 -2.1032 1.3319 38 1 2.2777 -2.8429 0.6605 39 1 0.1216 -1.5431 1.6055 40 1 3.3312 0.3911 4.1407 41 1 3.5379 2.7160 4.9058 42 1 4.3592 4.2090 7.0931 43 1 -0.7519 2.9551 5.2310 44 1 -0.9213 0.6317 4.4527 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094268815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:16 Heat of formation + Delta-G solvation = -81.466288 kcal Electronic energy + Delta-G solvation = -26275.793654 eV Core-core repulsion = 22704.493537 eV Total energy + Delta-G solvation = -3571.300117 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.45334 -37.56897 -36.42071 -35.07324 -34.03893 -33.32063 -32.15915 -30.25932 -29.46769 -27.57251 -26.78665 -25.81209 -24.23361 -21.52325 -21.13860 -20.73542 -18.91584 -18.80236 -17.62023 -17.11798 -16.47696 -15.97809 -15.50873 -15.12361 -14.71045 -14.25493 -14.13751 -13.46370 -13.39384 -13.22551 -13.05016 -12.85656 -12.59297 -12.36361 -12.18833 -12.06303 -11.75061 -11.51061 -11.46495 -11.37479 -11.30155 -11.21273 -11.20356 -10.95641 -10.87300 -10.82190 -10.55255 -10.48659 -10.43237 -10.34406 -9.74871 -9.62399 -9.48258 -8.96061 -7.95129 -7.70093 -7.13884 -4.79816 1.30742 2.26357 2.86953 2.88839 2.92228 2.95286 3.65819 3.77254 4.24502 4.44943 4.55779 4.67951 4.80357 5.18187 5.27533 5.36781 5.37978 5.40195 5.44106 5.48164 5.65580 5.73420 5.81694 5.87177 5.91300 5.94413 6.03433 6.07934 6.11805 6.17448 6.20133 6.32944 6.39730 6.46141 6.59266 6.68209 6.71902 6.91749 7.05367 7.33002 7.38171 7.43320 7.63801 7.76933 7.97324 8.31964 8.51587 8.65214 9.77733 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.004240 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.089753 B = 6602.834547 C = 7391.468022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.072 4.072 3 C -0.142 4.142 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.139 4.139 7 C 0.162 3.838 8 H 0.092 0.908 9 N -1.119 6.119 10 S 2.689 3.311 11 O -0.989 6.989 12 O -0.983 6.983 13 C -0.786 4.786 14 C -0.017 4.017 15 C -0.182 4.182 16 C 0.141 3.859 17 C -0.437 4.437 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.765 5.765 21 Si 0.915 3.085 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.239 4.239 26 C 0.003 3.997 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.410 0.590 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.289 0.711 43 H 0.099 0.901 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 -3.656 -12.946 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 C -0.199 4.199 4 C -0.152 4.152 5 C -0.162 4.162 6 C -0.179 4.179 7 C 0.054 3.946 8 H 0.110 0.890 9 N -0.876 5.876 10 S 2.787 3.213 11 O -0.980 6.980 12 O -0.973 6.973 13 C -0.881 4.881 14 C -0.037 4.037 15 C -0.202 4.202 16 C 0.137 3.863 17 C -0.464 4.464 18 H 0.105 0.895 19 C -0.149 4.149 20 N -0.388 5.388 21 Si 0.738 3.262 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.180 1.180 25 C -0.259 4.259 26 C -0.017 4.017 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.245 0.755 40 H 0.120 0.880 41 H 0.139 0.861 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.009 -4.443 -12.205 12.989 hybrid contribution -0.084 1.441 0.032 1.444 sum -0.074 -3.002 -12.173 12.538 Atomic orbital electron populations 1.21860 0.94324 1.01244 1.02255 1.21381 0.96009 0.95729 0.94258 1.21922 1.00941 0.94662 1.02388 1.22488 0.97298 0.98713 0.96739 1.22462 0.97784 0.99806 0.96155 1.22887 1.00330 0.98434 0.96207 1.21397 0.86525 0.94437 0.92198 0.88972 1.56003 1.24550 1.81102 1.25984 1.01334 0.72779 0.75254 0.71885 1.93486 1.44825 1.80969 1.78709 1.93488 1.45200 1.75453 1.83173 1.29144 0.99883 1.24346 1.34771 1.20252 0.93641 0.94983 0.94834 1.21323 0.99128 0.94221 1.05574 1.17833 0.91274 0.92234 0.84962 1.19924 0.99696 0.96102 1.30685 0.89509 1.26127 0.94991 1.00987 0.92830 1.69827 1.08861 1.36941 1.23127 0.86168 0.78810 0.81203 0.79991 1.19111 1.19586 1.18011 1.21014 0.96985 0.95278 1.12668 1.20141 0.94917 0.93863 0.92772 0.91500 0.92753 0.92792 0.91540 0.92487 0.92742 0.91624 0.91613 0.91326 0.91678 0.90675 0.91004 0.75482 0.87997 0.86087 0.89967 0.88286 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 7.12 37.16 0.26 -1.27 16 2 C -0.07 -0.83 0.94 -153.39 -0.14 -0.97 16 3 C -0.14 -1.69 8.15 37.16 0.30 -1.39 16 4 C -0.11 -1.11 5.90 -25.07 -0.15 -1.25 16 5 C -0.12 -1.23 6.91 -24.74 -0.17 -1.40 16 6 C -0.14 -1.72 6.54 -25.07 -0.16 -1.88 16 7 C 0.16 2.22 3.08 -66.81 -0.21 2.02 16 8 H 0.09 1.40 6.84 -51.93 -0.36 1.04 16 9 N -1.12 -16.53 4.67 -3.94 -0.02 -16.55 16 10 S 2.69 51.98 5.65 -107.50 -0.61 51.37 16 11 O -0.99 -21.20 17.26 -57.17 -0.99 -22.19 16 12 O -0.98 -21.16 17.01 -57.17 -0.97 -22.13 16 13 C -0.79 -17.10 5.88 -39.29 -0.23 -17.33 16 14 C -0.02 -0.38 8.91 -39.66 -0.35 -0.74 16 15 C -0.18 -4.48 8.70 -38.87 -0.34 -4.82 16 16 C 0.14 3.52 5.57 -106.83 -0.60 2.92 16 17 C -0.44 -10.62 9.05 -37.75 -0.34 -10.96 16 18 H 0.09 1.99 7.91 -52.49 -0.41 1.58 16 19 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 20 N -0.77 -18.29 10.97 55.55 0.61 -17.68 16 21 Si 0.92 16.88 29.60 -169.99 -5.03 11.85 16 22 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 23 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 24 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 25 C -0.24 -5.60 9.80 -38.87 -0.38 -5.98 16 26 C 0.00 0.07 9.49 -39.66 -0.38 -0.31 16 27 H 0.07 0.83 7.80 -51.93 -0.41 0.43 16 28 H 0.05 0.53 6.84 -51.93 -0.36 0.18 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 34 H 0.07 0.58 7.84 -51.93 -0.41 0.17 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 39 H 0.41 5.15 6.42 -34.47 -0.22 4.93 16 40 H 0.10 2.16 7.59 -52.49 -0.40 1.76 16 41 H 0.12 3.02 6.18 -52.49 -0.32 2.69 16 42 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 43 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 44 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -29.16 361.89 -11.15 -40.30 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.62 Total: 11.34 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: -2.97 Total: -41.78 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.59 Total: -34.23 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.96 Total: -44.32 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Atomic # 16 Polarization: 51.98 SS G_CDS: -0.61 Total: 51.37 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.16 -11.15 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094268815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.162 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds