Wall clock time and date at job start Tue Mar 31 2020 14:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 120.00082 * 2 1 4 4 C 1.38212 * 119.99937 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00438 * 0.02930 * 4 3 2 6 6 C 1.38220 * 119.99628 * 359.69555 * 5 4 3 7 7 C 1.38216 * 119.99679 * 179.97438 * 2 1 3 8 8 S 1.76194 * 120.00305 * 359.97438 * 7 2 1 9 9 O 1.42100 * 106.40178 * 180.23225 * 8 7 2 10 10 O 1.42107 * 106.40104 * 47.31443 * 8 7 2 11 11 N 1.65598 * 107.22001 * 293.77718 * 8 7 2 12 12 C 1.46504 * 119.99537 * 279.28912 * 11 8 7 13 13 C 1.50699 * 109.46941 * 264.99739 * 12 11 8 14 14 H 1.08002 * 120.00116 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00194 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99954 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00232 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47179 * 90.00036 * 17 15 13 19 19 H 1.48501 * 109.47056 * 210.00012 * 17 15 13 20 20 H 1.48496 * 109.47154 * 329.99907 * 17 15 13 21 21 C 1.46495 * 120.00501 * 99.28398 * 11 8 7 22 22 C 1.54961 * 110.92046 * 117.09860 * 21 11 8 23 23 C 1.54271 * 104.15828 * 156.29719 * 22 21 11 24 24 C 1.53871 * 106.64166 * 336.44881 * 23 22 21 25 25 C 1.54269 * 106.59891 * 359.97394 * 24 23 22 26 26 H 1.09001 * 109.47123 * 272.62056 * 1 2 3 27 27 H 1.08997 * 109.47124 * 32.61973 * 1 2 3 28 28 H 1.09001 * 109.47397 * 152.62178 * 1 2 3 29 29 H 1.08004 * 119.99957 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.99843 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.00598 * 179.97438 * 5 4 3 32 32 H 1.07997 * 120.00324 * 180.30001 * 6 5 4 33 33 H 1.08995 * 109.47187 * 24.99565 * 12 11 8 34 34 H 1.08997 * 109.47393 * 145.00106 * 12 11 8 35 35 H 0.97008 * 120.00320 * 180.02562 * 16 15 13 36 36 H 1.09005 * 110.66822 * 353.79826 * 21 11 8 37 37 H 1.08999 * 110.47944 * 37.64547 * 22 21 11 38 38 H 1.09001 * 110.53455 * 274.97387 * 22 21 11 39 39 H 1.09002 * 110.03468 * 217.13388 * 23 22 21 40 40 H 1.09006 * 110.02914 * 95.75552 * 23 22 21 41 41 H 1.08994 * 110.03483 * 119.25736 * 24 23 22 42 42 H 1.08997 * 110.03609 * 240.64277 * 24 23 22 43 43 H 1.08996 * 110.48788 * 142.28728 * 25 24 23 44 44 H 1.09001 * 110.48565 * 264.80176 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1970 0.0062 7 6 2.1980 -1.1970 0.0005 8 16 1.3171 -2.7229 0.0019 9 8 2.2970 -3.7520 0.0077 10 8 0.3156 -2.6089 -0.9999 11 7 0.5202 -2.8276 1.4498 12 6 1.2370 -3.2649 2.6503 13 6 1.0372 -4.7460 2.8431 14 1 0.4367 -5.3058 2.1413 15 6 1.6209 -5.3866 3.9154 16 7 2.3517 -4.7050 4.7703 17 14 1.3726 -7.2226 4.1548 18 1 2.4463 -7.9640 3.4457 19 1 1.4229 -7.5441 5.6037 20 1 0.0512 -7.6191 3.6054 21 6 -0.9013 -2.4830 1.5302 22 6 -1.7464 -3.7136 1.9456 23 6 -3.0209 -3.1043 2.5657 24 6 -2.6482 -1.6873 3.0356 25 6 -1.1596 -1.4842 2.6856 26 1 -0.3633 0.0470 1.0266 27 1 -0.3633 0.8655 -0.5540 28 1 -0.3634 -0.9125 -0.4726 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 0.0001 31 1 5.3517 -0.0001 0.0005 32 1 4.1206 -2.1323 0.0110 33 1 2.3001 -3.0536 2.5359 34 1 0.8517 -2.7303 3.5185 35 1 2.7628 -5.1557 5.5246 36 1 -1.2528 -2.0761 0.5820 37 1 -1.2118 -4.3119 2.6834 38 1 -1.9976 -4.3171 1.0733 39 1 -3.3474 -3.7054 3.4143 40 1 -3.8124 -3.0536 1.8179 41 1 -3.2582 -0.9489 2.5153 42 1 -2.7946 -1.6004 4.1122 43 1 -0.9820 -0.4616 2.3527 44 1 -0.5303 -1.7197 3.5439 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098149343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:45 Heat of formation + Delta-G solvation = -48.095017 kcal Electronic energy + Delta-G solvation = -27101.366623 eV Core-core repulsion = 23531.513593 eV Total energy + Delta-G solvation = -3569.853030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.22148 -38.23364 -36.72762 -35.20814 -34.20477 -32.82842 -32.21208 -31.08304 -28.35333 -27.88134 -26.79219 -26.08460 -23.08976 -22.68934 -21.62106 -19.90316 -19.81467 -18.30400 -17.58676 -16.96980 -16.34029 -15.86741 -15.59988 -15.17585 -15.00342 -14.31324 -14.30542 -14.25066 -13.79099 -13.23098 -12.98172 -12.74301 -12.63387 -12.53708 -12.22469 -12.18109 -11.96713 -11.58279 -11.43544 -11.21722 -11.16622 -11.07823 -10.96039 -10.81301 -10.68318 -10.59808 -10.53377 -10.26149 -10.16881 -9.90277 -9.76241 -9.42514 -9.20043 -8.66710 -8.41587 -8.00924 -6.05479 -4.07287 0.86941 1.13305 1.39765 3.33425 3.39713 3.42038 3.47296 3.78131 4.31891 4.45723 4.67501 4.86731 4.91061 5.04650 5.06331 5.11391 5.23619 5.28425 5.29002 5.48244 5.57112 5.61547 5.62447 5.82535 5.93215 5.95037 6.02814 6.04440 6.09925 6.13888 6.25179 6.27330 6.32777 6.34583 6.42007 6.43619 6.54053 6.78035 6.79043 6.96742 7.19146 7.27631 7.41900 7.65843 7.92406 8.21535 8.93909 9.56092 11.02960 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012071 B = 0.006138 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.035344 B = 4560.710857 C = 5751.302406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.023 3.977 3 C -0.150 4.150 4 C -0.069 4.069 5 C -0.151 4.151 6 C -0.015 4.015 7 C -0.675 4.675 8 S 2.684 3.316 9 O -0.943 6.943 10 O -0.977 6.977 11 N -0.973 5.973 12 C 0.255 3.745 13 C -0.520 4.520 14 H 0.065 0.935 15 C 0.063 3.937 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.146 3.854 22 C -0.144 4.144 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.143 4.143 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 12.133 -6.197 14.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.022 3.978 3 C -0.169 4.169 4 C -0.087 4.087 5 C -0.170 4.170 6 C -0.034 4.034 7 C -0.759 4.759 8 S 2.775 3.225 9 O -0.934 6.934 10 O -0.967 6.967 11 N -0.811 5.811 12 C 0.133 3.867 13 C -0.559 4.559 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.721 3.279 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.197 1.197 21 C 0.039 3.961 22 C -0.183 4.183 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.181 4.181 26 H 0.114 0.886 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.161 0.839 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.130 0.870 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.895 11.522 -6.706 13.889 hybrid contribution 0.412 -0.178 0.584 0.736 sum -3.483 11.344 -6.122 13.353 Atomic orbital electron populations 1.22069 0.90909 1.06610 1.04770 1.19518 0.95782 0.91839 0.90702 1.21109 0.94444 0.97553 1.03773 1.21358 0.94407 0.98121 0.94856 1.21238 1.00188 0.92500 1.03081 1.21041 0.92204 0.99540 0.90649 1.31237 1.06520 1.20833 1.17354 1.02194 0.73467 0.73709 0.73155 1.93584 1.61168 1.52586 1.86018 1.93432 1.58673 1.87039 1.57542 1.57364 1.16914 1.79955 1.26884 1.19107 0.90877 0.95270 0.81411 1.21486 1.31269 0.93300 1.09864 0.91651 1.24911 0.94950 0.98280 0.95819 1.69921 1.33107 1.35984 1.14463 0.86575 0.78827 0.85494 0.77036 1.20505 1.21322 1.19729 1.21851 0.80294 0.95348 0.98576 1.22988 0.95124 0.98075 1.02145 1.22065 0.97883 0.95990 1.00011 1.22025 0.95997 0.96935 1.00729 1.22922 0.96634 0.98300 1.00263 0.88621 0.90315 0.87394 0.85584 0.85713 0.85371 0.83925 0.94836 0.93854 0.92776 0.88681 0.86984 0.92337 0.92032 0.92629 0.92456 0.92040 0.91854 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 8.30 36.01 0.30 -2.21 16 2 C 0.02 0.35 5.87 -104.62 -0.61 -0.27 16 3 C -0.15 -1.92 9.71 -39.59 -0.38 -2.31 16 4 C -0.07 -0.84 10.05 -39.59 -0.40 -1.23 16 5 C -0.15 -2.03 10.05 -39.58 -0.40 -2.43 16 6 C -0.02 -0.25 9.55 -39.58 -0.38 -0.63 16 7 C -0.67 -11.81 5.91 -39.58 -0.23 -12.05 16 8 S 2.68 54.13 4.99 -107.50 -0.54 53.59 16 9 O -0.94 -22.32 16.29 -57.17 -0.93 -23.25 16 10 O -0.98 -19.73 14.10 -57.17 -0.81 -20.54 16 11 N -0.97 -19.56 2.82 -106.42 -0.30 -19.86 16 12 C 0.25 6.06 4.80 -5.19 -0.02 6.04 16 13 C -0.52 -13.77 7.39 -34.44 -0.25 -14.02 16 14 H 0.07 1.74 7.03 -52.49 -0.37 1.37 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.90 -25.30 13.29 55.43 0.74 -24.57 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.15 2.51 2.15 -65.90 -0.14 2.37 16 22 C -0.14 -2.52 6.08 -25.03 -0.15 -2.68 16 23 C -0.12 -1.71 6.80 -25.61 -0.17 -1.88 16 24 C -0.12 -1.55 6.80 -25.61 -0.17 -1.72 16 25 C -0.14 -2.14 6.09 -25.07 -0.15 -2.29 16 26 H 0.10 1.18 4.52 -51.93 -0.23 0.94 16 27 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.11 1.63 3.23 -51.93 -0.17 1.46 16 29 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.14 2.35 7.33 -52.49 -0.38 1.96 16 33 H 0.03 0.86 7.86 -51.93 -0.41 0.45 16 34 H 0.04 1.04 5.85 -51.93 -0.30 0.74 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.10 1.51 5.07 -51.93 -0.26 1.25 16 37 H 0.11 2.30 5.30 -51.93 -0.28 2.03 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.82 5.33 -51.93 -0.28 0.54 16 44 H 0.09 1.51 5.86 -51.93 -0.30 1.21 16 LS Contribution 346.04 15.07 5.21 5.21 Total: -1.00 -31.28 346.04 -10.85 -42.13 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.93 Total: 4.69 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: -3.28 Total: -33.70 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.44 Total: -44.43 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -1.74 Total: -43.79 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 54.13 SS G_CDS: -0.54 Total: 53.59 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.28 -10.85 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098149343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.967 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds