Wall clock time and date at job start Tue Mar 31 2020 14:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42900 * 114.00185 * 2 1 4 4 C 1.53006 * 109.47199 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47056 * 64.99855 * 4 3 2 6 6 C 1.46505 * 119.99915 * 269.99813 * 5 4 3 7 7 C 1.50695 * 109.46995 * 269.99992 * 6 5 4 8 8 H 1.07995 * 120.00390 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99853 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00155 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00330 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47222 * 89.99732 * 11 9 7 13 13 H 1.48498 * 109.47414 * 210.00337 * 11 9 7 14 14 H 1.48499 * 109.47023 * 330.00027 * 11 9 7 15 15 C 1.34772 * 119.99837 * 90.00458 * 5 4 3 16 16 O 1.21289 * 119.99990 * 179.97438 * 15 5 4 17 17 C 1.50705 * 119.99986 * 359.97438 * 15 5 4 18 18 S 1.81405 * 109.46754 * 180.02562 * 17 15 5 19 19 C 1.76199 * 102.99690 * 180.02562 * 18 17 15 20 20 C 1.38977 * 120.08249 * 359.72231 * 19 18 17 21 21 C 1.38084 * 119.92015 * 179.76941 * 20 19 18 22 22 C 1.38300 * 120.07741 * 0.50606 * 21 20 19 23 23 C 1.50706 * 119.91427 * 179.76389 * 22 21 20 24 24 C 1.38301 * 120.16533 * 359.74924 * 22 21 20 25 25 C 1.38080 * 120.07869 * 359.97438 * 24 22 21 26 26 H 1.09006 * 109.47017 * 299.99876 * 1 2 3 27 27 H 1.08999 * 109.47564 * 59.99646 * 1 2 3 28 28 H 1.09000 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46841 * 60.00165 * 3 2 1 30 30 H 1.09000 * 109.47229 * 299.99787 * 3 2 1 31 31 H 1.09006 * 109.46572 * 304.99833 * 4 3 2 32 32 H 1.08997 * 109.47163 * 185.00512 * 4 3 2 33 33 H 1.09001 * 109.47068 * 30.00559 * 6 5 4 34 34 H 1.08998 * 109.46735 * 150.00434 * 6 5 4 35 35 H 0.96998 * 120.00540 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47022 * 60.00522 * 17 15 5 37 37 H 1.08998 * 109.46894 * 300.00078 * 17 15 5 38 38 H 1.08005 * 120.03947 * 0.02562 * 20 19 18 39 39 H 1.08001 * 119.95932 * 180.23211 * 21 20 19 40 40 H 1.08999 * 109.47375 * 269.97967 * 23 22 21 41 41 H 1.09001 * 109.47025 * 29.98434 * 23 22 21 42 42 H 1.09003 * 109.46443 * 149.98436 * 23 22 21 43 43 H 1.07991 * 119.96023 * 179.97438 * 24 22 21 44 44 H 1.07998 * 120.03913 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.1052 -0.8922 -1.3427 7 6 5.5009 -1.2979 -0.9449 8 1 6.2195 -0.5461 -0.6537 9 6 5.8605 -2.6289 -0.9526 10 7 4.9856 -3.5444 -1.3077 11 14 7.5904 -3.1320 -0.4589 12 1 7.6339 -3.3851 1.0038 13 1 7.9732 -4.3683 -1.1868 14 1 8.5395 -2.0422 -0.8010 15 6 4.2615 1.3336 -2.3217 16 8 4.6264 0.8202 -3.3582 17 6 4.1278 2.8319 -2.2292 18 16 4.5800 3.5785 -3.8195 19 6 4.3667 5.3022 -3.5229 20 6 3.9356 5.7469 -2.2787 21 6 3.7742 7.0988 -2.0485 22 6 4.0309 8.0092 -3.0574 23 6 3.8483 9.4835 -2.8037 24 6 4.4549 7.5701 -4.2984 25 6 4.6241 6.2202 -4.5342 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8514 0.5681 0.8410 32 1 3.9785 2.1764 0.0890 33 1 3.3851 -1.3630 -0.6733 34 1 3.9120 -1.2115 -2.3668 35 1 5.2387 -4.4808 -1.3135 36 1 4.7899 3.2083 -1.4494 37 1 3.0971 3.0904 -1.9869 38 1 3.7311 5.0362 -1.4916 39 1 3.4428 7.4453 -1.0807 40 1 2.8269 9.7714 -3.0527 41 1 4.0402 9.6977 -1.7523 42 1 4.5459 10.0477 -3.4227 43 1 4.6540 8.2839 -5.0839 44 1 4.9549 5.8779 -5.5036 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103214853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:57 Heat of formation + Delta-G solvation = -76.836291 kcal Electronic energy + Delta-G solvation = -24550.179607 eV Core-core repulsion = 20979.080262 eV Total energy + Delta-G solvation = -3571.099345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82142 -40.05058 -38.77184 -36.60882 -34.85648 -33.74334 -32.29502 -31.51353 -30.75449 -28.62297 -27.80970 -27.10687 -24.84818 -24.02855 -23.50416 -22.47190 -20.32595 -18.82026 -18.62464 -18.21432 -17.44169 -17.09139 -16.78968 -16.57886 -16.31834 -16.24872 -15.97444 -15.64264 -15.39473 -14.73864 -14.62338 -14.50773 -14.28775 -14.03284 -13.83004 -13.60326 -13.28502 -13.10720 -13.07120 -13.03610 -12.84600 -12.75202 -12.56821 -12.31708 -12.18948 -11.96848 -11.94428 -11.69746 -11.10884 -10.82875 -10.62666 -10.54701 -10.41772 -9.92189 -9.49640 -8.36970 -8.20000 -6.34744 0.25517 0.29625 0.44144 1.35980 1.39623 1.41379 1.49531 1.64897 2.23123 2.42346 2.74110 2.95334 3.09841 3.44712 3.85801 3.87750 3.97588 4.05215 4.08312 4.16052 4.31082 4.39379 4.45327 4.48206 4.49972 4.53186 4.59675 4.76612 4.81794 4.86399 4.91175 4.92248 5.13742 5.14913 5.24321 5.27817 5.35279 5.40383 5.54799 5.68386 5.83054 6.03039 6.08178 6.32701 6.65842 6.75889 7.23269 7.38946 8.87353 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.003159 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.626349 B = 8860.073016 C =10116.616923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.417 6.417 3 C 0.043 3.957 4 C 0.100 3.900 5 N -0.587 5.587 6 C 0.272 3.728 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.006 3.994 10 N -0.928 5.928 11 Si 0.968 3.032 12 H -0.262 1.262 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.511 3.489 16 O -0.581 6.581 17 C -0.122 4.122 18 S -0.101 6.101 19 C -0.112 4.112 20 C -0.140 4.140 21 C -0.104 4.104 22 C -0.099 4.099 23 C -0.111 4.111 24 C -0.106 4.106 25 C -0.113 4.113 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.032 0.968 34 H -0.011 1.011 35 H 0.266 0.734 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.147 0.853 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 26.458 3.852 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C -0.034 4.034 4 C -0.022 4.022 5 N -0.317 5.317 6 C 0.151 3.849 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.193 4.193 10 N -0.568 5.568 11 Si 0.792 3.208 12 H -0.187 1.187 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.297 3.703 16 O -0.461 6.461 17 C -0.273 4.273 18 S 0.143 5.857 19 C -0.225 4.225 20 C -0.164 4.164 21 C -0.123 4.123 22 C -0.102 4.102 23 C -0.167 4.167 24 C -0.126 4.126 25 C -0.137 4.137 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.144 0.856 33 H 0.050 0.950 34 H 0.007 0.993 35 H 0.075 0.925 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.168 0.832 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.165 0.835 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.902 25.098 2.349 26.136 hybrid contribution 0.181 -0.394 0.935 1.031 sum -6.721 24.704 3.285 25.812 Atomic orbital electron populations 1.22851 0.80026 1.03070 1.00835 1.88047 1.21147 1.28956 1.95526 1.23212 0.93276 0.84949 1.01966 1.21990 0.93416 1.00432 0.86384 1.48048 1.63957 1.07961 1.11744 1.18690 0.95716 0.75201 0.95269 1.21741 0.98213 0.92661 1.45577 0.92735 1.25871 1.01861 0.96421 0.95109 1.70077 1.36599 1.01431 1.48708 0.85416 0.79021 0.77559 0.78808 1.18733 1.20753 1.19704 1.20215 0.77769 0.88635 0.83631 1.90698 1.48525 1.75655 1.31233 1.23783 1.08645 0.94119 1.00739 1.86596 1.84809 0.96927 1.17399 1.22102 1.05360 0.96455 0.98538 1.21439 1.01863 0.97679 0.95404 1.21279 0.99149 0.91783 1.00128 1.20348 0.98737 0.97635 0.93481 1.20829 1.03012 0.89553 1.03334 1.21238 0.99098 0.94482 0.97736 1.20903 1.01422 0.93130 0.98261 0.91774 0.93855 0.90203 0.88532 0.92961 0.89977 0.85590 0.94975 0.99337 0.92520 0.84238 0.84220 0.84494 0.83224 0.90265 0.90460 0.90687 0.83541 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.42 -13.83 9.53 -148.98 -1.42 -15.25 16 3 C 0.04 1.06 6.28 71.98 0.45 1.51 16 4 C 0.10 2.94 5.62 86.38 0.49 3.43 16 5 N -0.59 -25.02 2.42 -826.14 -2.00 -27.02 16 6 C 0.27 15.24 4.98 85.63 0.43 15.67 16 7 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 8 H 0.05 3.16 7.81 -2.91 -0.02 3.13 16 9 C 0.01 0.37 5.46 84.65 0.46 0.83 16 10 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 11 Si 0.97 46.10 29.54 68.60 2.03 48.13 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 15 C 0.51 21.59 7.69 87.66 0.67 22.27 16 16 O -0.58 -31.30 15.44 -3.06 -0.05 -31.35 16 17 C -0.12 -3.46 3.37 71.24 0.24 -3.22 16 18 S -0.10 -3.20 21.06 -56.49 -1.19 -4.39 16 19 C -0.11 -2.75 6.11 22.62 0.14 -2.61 16 20 C -0.14 -2.72 9.36 22.41 0.21 -2.51 16 21 C -0.10 -1.62 9.69 22.25 0.22 -1.40 16 22 C -0.10 -1.49 5.88 -19.83 -0.12 -1.61 16 23 C -0.11 -0.96 10.01 71.24 0.71 -0.25 16 24 C -0.11 -1.81 9.69 22.25 0.22 -1.59 16 25 C -0.11 -2.52 9.79 22.41 0.22 -2.30 16 26 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.19 7.30 -2.39 -0.02 1.17 16 31 H 0.08 2.66 8.07 -2.38 -0.02 2.64 16 32 H 0.13 2.46 6.44 -2.39 -0.02 2.45 16 33 H 0.03 1.88 7.12 -2.39 -0.02 1.86 16 34 H -0.01 -0.75 7.42 -2.39 -0.02 -0.77 16 35 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.14 3.11 7.02 -2.39 -0.02 3.09 16 37 H 0.14 3.00 6.85 -2.39 -0.02 2.98 16 38 H 0.14 2.12 5.88 -2.91 -0.02 2.10 16 39 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 40 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 42 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 43 H 0.15 1.76 8.06 -2.92 -0.02 1.73 16 44 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -83.03 380.20 4.46 -78.56 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.98 Total: 10.85 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 5.82 Total: -1.78 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -1.71 Total: -84.78 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.47 Total: -46.59 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -1.19 Total: -4.39 kcal Total: -83.03 4.46 -78.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.725 kcal (2) G-P(sol) polarization free energy of solvation -83.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds