Wall clock time and date at job start Tue Mar 31 2020 13:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38146 * 119.89466 * 2 1 4 4 C 1.38206 * 119.93603 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.93670 * 0.02562 * 4 3 2 6 6 C 1.38456 * 120.21438 * 359.97438 * 5 4 3 7 7 C 1.38260 * 119.84714 * 0.02562 * 6 5 4 8 8 C 1.51373 * 109.75586 * 179.97438 * 7 6 5 9 9 C 1.54346 * 105.16813 * 17.19158 * 8 7 6 10 10 C 1.51369 * 130.40174 * 180.02562 * 6 5 4 11 11 H 1.09003 * 110.29902 * 281.85368 * 10 6 5 12 12 N 1.46497 * 110.30210 * 43.90593 * 10 6 5 13 13 S 1.65601 * 119.99900 * 215.73531 * 12 10 6 14 14 O 1.42097 * 104.27980 * 308.55923 * 13 12 10 15 15 O 1.42104 * 104.27877 * 180.70087 * 13 12 10 16 16 C 1.81405 * 104.44856 * 64.62974 * 13 12 10 17 17 C 1.53000 * 109.46952 * 173.98508 * 16 13 12 18 18 C 1.52999 * 109.46920 * 180.02562 * 17 16 13 19 19 C 1.50695 * 109.47284 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99865 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00153 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00048 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00035 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47074 * 180.02562 * 23 21 19 25 25 H 1.48498 * 109.47149 * 299.99975 * 23 21 19 26 26 H 1.48496 * 109.47117 * 59.99836 * 23 21 19 27 27 H 1.09005 * 109.47305 * 270.02829 * 1 2 3 28 28 H 1.09006 * 109.47108 * 30.02360 * 1 2 3 29 29 H 1.08993 * 109.47446 * 150.02182 * 1 2 3 30 30 H 1.08008 * 120.03214 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.03102 * 180.02562 * 4 3 2 32 32 H 1.08000 * 119.89780 * 179.97438 * 5 4 3 33 33 H 1.08993 * 110.30526 * 136.11879 * 8 7 6 34 34 H 1.08996 * 110.29942 * 258.27208 * 8 7 6 35 35 H 1.08997 * 110.82195 * 215.41550 * 9 8 7 36 36 H 1.09003 * 110.81620 * 91.87382 * 9 8 7 37 37 H 0.97000 * 120.00041 * 35.74231 * 12 10 6 38 38 H 1.09003 * 109.46900 * 53.98292 * 16 13 12 39 39 H 1.09003 * 109.47011 * 293.98910 * 16 13 12 40 40 H 1.08994 * 109.47066 * 60.00571 * 17 16 13 41 41 H 1.08996 * 109.47133 * 299.99570 * 17 16 13 42 42 H 1.09003 * 109.47135 * 59.99660 * 18 17 16 43 43 H 1.09003 * 109.46809 * 300.00259 * 18 17 16 44 44 H 0.96999 * 119.99928 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1976 0.0000 4 6 3.5776 1.1986 0.0005 5 6 4.2679 0.0020 0.0005 6 6 3.5796 -1.1994 0.0005 7 6 2.1970 -1.2003 0.0000 8 6 1.6864 -2.6253 -0.0005 9 6 2.8896 -3.4857 0.4401 10 6 4.0921 -2.6237 0.0010 11 1 4.4182 -2.9086 -0.9993 12 7 5.1953 -2.7666 0.9543 13 16 6.4616 -3.7767 0.6100 14 8 5.8434 -5.0095 0.2675 15 8 7.3109 -3.6734 1.7445 16 6 7.2501 -3.0342 -0.8453 17 6 8.5335 -3.7988 -1.1756 18 6 9.1989 -3.1721 -2.4026 19 6 10.4627 -3.9255 -2.7285 20 1 10.7616 -4.7669 -2.1209 21 6 11.2373 -3.5407 -3.8022 22 7 10.8730 -2.5165 -4.5423 23 14 12.8043 -4.4742 -4.2057 24 1 13.4500 -3.8660 -5.3967 25 1 13.7336 -4.4045 -3.0496 26 1 12.4751 -5.8938 -4.4912 27 1 -0.3634 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5135 30 1 1.6543 2.1323 0.0004 31 1 4.1174 2.1341 0.0010 32 1 5.3479 0.0035 0.0005 33 1 0.8649 -2.7330 0.7077 34 1 1.3636 -2.9110 -1.0016 35 1 2.8905 -4.4448 -0.0779 36 1 2.8892 -3.6278 1.5208 37 1 5.1840 -2.2696 1.7872 38 1 7.4916 -1.9921 -0.6356 39 1 6.5679 -3.0853 -1.6939 40 1 8.2919 -4.8407 -1.3854 41 1 9.2156 -3.7476 -0.3270 42 1 9.4405 -2.1302 -2.1925 43 1 8.5169 -3.2229 -3.2514 44 1 10.0592 -2.0320 -4.3330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109343403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:54 Heat of formation + Delta-G solvation = -99.428488 kcal Electronic energy + Delta-G solvation = -24891.559624 eV Core-core repulsion = 21319.480607 eV Total energy + Delta-G solvation = -3572.079016 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31521 -38.30495 -37.51791 -37.11814 -36.80231 -34.61698 -34.26232 -33.28206 -29.95577 -29.34522 -27.84132 -27.07551 -25.49403 -23.06743 -22.82618 -22.01028 -21.23993 -20.47970 -19.17509 -18.70734 -17.80523 -17.27295 -16.90547 -16.63852 -16.29864 -15.85245 -15.70714 -15.66401 -15.33045 -14.99560 -14.47671 -14.16595 -13.95332 -13.90736 -13.67552 -13.54946 -13.29959 -13.21296 -13.17186 -13.12428 -13.04977 -12.95412 -12.62006 -12.56351 -12.46624 -12.05180 -11.95619 -11.91866 -11.85473 -11.69861 -11.50600 -10.80111 -10.57723 -10.50982 -9.56530 -9.44698 -8.72811 -6.43933 -0.84920 0.35949 0.43571 1.51832 1.59804 1.69168 1.79451 2.53799 2.64585 2.77410 3.11852 3.14234 3.31159 3.51435 3.61840 3.76725 3.94489 4.03986 4.11538 4.15400 4.16567 4.22238 4.30120 4.47745 4.48628 4.66924 4.75133 4.79400 4.80856 4.85850 4.88313 4.90485 4.98368 5.09547 5.18089 5.23683 5.26727 5.34799 5.35343 5.57414 5.58988 5.69475 5.93506 5.99724 6.09246 6.14236 6.53520 7.37308 8.68704 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.002872 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.337862 B = 9747.357385 C =10665.863526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.120 4.120 4 C -0.128 4.128 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.097 4.097 8 C -0.076 4.076 9 C -0.134 4.134 10 C 0.185 3.815 11 H 0.104 0.896 12 N -1.099 6.099 13 S 2.631 3.369 14 O -0.981 6.981 15 O -0.990 6.990 16 C -0.615 4.615 17 C -0.099 4.099 18 C 0.015 3.985 19 C -0.629 4.629 20 H 0.052 0.948 21 C -0.037 4.037 22 N -0.936 5.936 23 Si 1.116 2.884 24 H -0.281 1.281 25 H -0.269 1.269 26 H -0.268 1.268 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.426 0.574 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.066 0.934 41 H 0.066 0.934 42 H -0.001 1.001 43 H -0.001 1.001 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.992 6.172 11.121 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.138 4.138 4 C -0.146 4.146 5 C -0.134 4.134 6 C -0.121 4.121 7 C -0.098 4.098 8 C -0.114 4.114 9 C -0.173 4.173 10 C 0.078 3.922 11 H 0.122 0.878 12 N -0.858 5.858 13 S 2.726 3.274 14 O -0.970 6.970 15 O -0.980 6.980 16 C -0.745 4.745 17 C -0.138 4.138 18 C -0.023 4.023 19 C -0.667 4.667 20 H 0.070 0.930 21 C -0.235 4.235 22 N -0.573 5.573 23 Si 0.936 3.064 24 H -0.207 1.207 25 H -0.194 1.194 26 H -0.193 1.193 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.141 0.859 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.262 0.738 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.017 0.983 43 H 0.018 0.982 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.510 5.203 10.422 25.345 hybrid contribution -0.922 1.088 0.757 1.615 sum -23.432 6.291 11.179 26.714 Atomic orbital electron populations 1.20813 0.89497 1.03593 1.03006 1.19780 0.97354 0.91590 0.99865 1.21290 0.94252 0.98174 1.00093 1.21309 0.94877 0.98118 1.00299 1.20831 1.00443 0.91659 1.00506 1.20641 0.94885 0.94056 1.02548 1.20632 0.93648 0.95676 0.99808 1.21069 0.98119 0.88860 1.03325 1.22838 0.92719 0.98804 1.02943 1.20478 0.87242 0.92063 0.92425 0.87849 1.55447 1.34839 1.65255 1.30301 1.04228 0.73338 0.74325 0.75521 1.93550 1.75127 1.42746 1.85608 1.93542 1.68469 1.87032 1.48994 1.30570 1.09364 1.13478 1.21097 1.21173 0.93591 0.98902 1.00119 1.19123 0.94901 0.95282 0.92980 1.22562 1.10078 1.17630 1.16446 0.92985 1.27432 1.06005 0.96958 0.93055 1.70922 1.25557 1.20146 1.40657 0.82960 0.71690 0.74970 0.76748 1.20671 1.19416 1.19345 0.90421 0.90613 0.90901 0.83910 0.84368 0.85931 0.88857 0.88771 0.89187 0.89808 0.73805 0.83611 0.83894 0.91520 0.91483 0.98255 0.98221 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.87 71.24 0.70 -0.40 16 2 C -0.09 -1.32 5.88 -19.83 -0.12 -1.43 16 3 C -0.12 -1.82 9.69 22.24 0.22 -1.60 16 4 C -0.13 -2.17 10.05 22.24 0.22 -1.94 16 5 C -0.12 -2.24 10.00 22.30 0.22 -2.01 16 6 C -0.12 -2.30 5.73 -19.59 -0.11 -2.41 16 7 C -0.10 -1.66 6.00 -19.59 -0.12 -1.77 16 8 C -0.08 -1.04 6.11 30.52 0.19 -0.85 16 9 C -0.13 -2.25 6.77 31.50 0.21 -2.03 16 10 C 0.18 3.57 3.30 44.91 0.15 3.72 16 11 H 0.10 1.91 7.37 -2.39 -0.02 1.89 16 12 N -1.10 -22.73 5.36 -169.73 -0.91 -23.64 16 13 S 2.63 74.18 5.38 -56.49 -0.30 73.87 16 14 O -0.98 -32.50 17.82 -127.65 -2.28 -34.78 16 15 O -0.99 -34.21 18.08 -127.65 -2.31 -36.52 16 16 C -0.61 -18.36 5.92 71.98 0.43 -17.94 16 17 C -0.10 -4.05 5.16 30.59 0.16 -3.89 16 18 C 0.02 0.79 4.28 29.85 0.13 0.92 16 19 C -0.63 -36.41 9.11 25.60 0.23 -36.18 16 20 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 21 C -0.04 -2.15 5.46 84.65 0.46 -1.69 16 22 N -0.94 -57.97 13.65 21.45 0.29 -57.68 16 23 Si 1.12 50.57 29.90 68.60 2.05 52.62 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.07 0.60 8.08 -2.38 -0.02 0.58 16 29 H 0.07 0.64 7.67 -2.39 -0.02 0.62 16 30 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 37 H 0.43 7.54 8.82 -96.74 -0.85 6.69 16 38 H 0.15 3.82 8.14 -2.39 -0.02 3.80 16 39 H 0.14 3.75 7.67 -2.39 -0.02 3.73 16 40 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.00 -0.05 8.01 -2.39 -0.02 -0.06 16 43 H 0.00 -0.03 8.01 -2.39 -0.02 -0.05 16 44 H 0.26 15.95 7.22 -92.71 -0.67 15.28 16 Total: -1.00 -76.79 374.72 -0.24 -77.04 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.24 Total: 18.62 kcal Atomic # 6 Polarization: -72.51 SS G_CDS: 2.97 Total: -69.53 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -0.62 Total: -81.32 kcal Atomic # 8 Polarization: -66.71 SS G_CDS: -4.58 Total: -71.30 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.05 Total: 52.62 kcal Atomic # 16 Polarization: 74.18 SS G_CDS: -0.30 Total: 73.87 kcal Total: -76.79 -0.24 -77.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109343403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.393 kcal (2) G-P(sol) polarization free energy of solvation -76.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds