Wall clock time and date at job start Tue Mar 31 2020 13:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38147 * 119.89060 * 2 1 4 4 C 1.38216 * 119.93450 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.93396 * 359.97438 * 4 3 2 6 6 C 1.38456 * 120.21753 * 0.02562 * 5 4 3 7 7 C 1.38267 * 119.84588 * 359.97438 * 6 5 4 8 8 C 1.51365 * 109.74883 * 179.97438 * 7 6 5 9 9 C 1.54606 * 105.19198 * 17.19852 * 8 7 6 10 10 C 1.51368 * 130.39974 * 179.97438 * 6 5 4 11 11 H 1.08997 * 110.30016 * 43.79273 * 10 6 5 12 12 N 1.46496 * 110.30284 * 281.73746 * 10 6 5 13 13 S 1.65601 * 120.00005 * 97.77708 * 12 10 6 14 14 O 1.42099 * 104.27614 * 308.92528 * 13 12 10 15 15 O 1.42098 * 104.27658 * 181.06900 * 13 12 10 16 16 C 1.81402 * 104.45063 * 64.99501 * 13 12 10 17 17 C 1.52992 * 109.47209 * 179.97438 * 16 13 12 18 18 C 1.53004 * 109.47319 * 180.02562 * 17 16 13 19 19 C 1.50700 * 109.47208 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99770 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00083 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00278 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46986 * 270.00126 * 23 21 19 25 25 H 1.48496 * 109.47029 * 30.00143 * 23 21 19 26 26 H 1.48499 * 109.47352 * 149.99973 * 23 21 19 27 27 H 1.08999 * 109.47116 * 90.00755 * 1 2 3 28 28 H 1.09005 * 109.46631 * 210.00112 * 1 2 3 29 29 H 1.08995 * 109.47139 * 329.99897 * 1 2 3 30 30 H 1.08002 * 120.03506 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.02996 * 179.97438 * 4 3 2 32 32 H 1.07997 * 119.89255 * 180.02562 * 5 4 3 33 33 H 1.08999 * 110.30714 * 136.11173 * 8 7 6 34 34 H 1.09005 * 110.30189 * 258.16619 * 8 7 6 35 35 H 1.08992 * 110.90380 * 215.43659 * 9 8 7 36 36 H 1.09002 * 110.84689 * 91.81387 * 9 8 7 37 37 H 0.97001 * 120.00162 * 277.76914 * 12 10 6 38 38 H 1.09009 * 109.46681 * 59.99982 * 16 13 12 39 39 H 1.08998 * 109.47443 * 300.00153 * 16 13 12 40 40 H 1.09000 * 109.47364 * 60.00146 * 17 16 13 41 41 H 1.08998 * 109.47610 * 300.00208 * 17 16 13 42 42 H 1.08994 * 109.47074 * 60.00408 * 18 17 16 43 43 H 1.08998 * 109.47285 * 300.00244 * 18 17 16 44 44 H 0.97005 * 119.99661 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1977 0.0000 4 6 3.5776 1.1988 -0.0005 5 6 4.2679 0.0021 -0.0005 6 6 3.5797 -1.1993 -0.0005 7 6 2.1970 -1.2003 0.0000 8 6 1.6866 -2.6253 -0.0008 9 6 2.8920 -3.4876 0.4394 10 6 4.0923 -2.6235 -0.0010 11 1 4.9150 -2.7296 0.7061 12 7 4.5269 -3.0069 -1.3465 13 16 6.1305 -2.9283 -1.7525 14 8 6.5239 -1.6164 -1.3741 15 8 6.1685 -3.3412 -3.1116 16 6 6.9276 -4.1633 -0.6894 17 6 8.4306 -4.1873 -0.9740 18 6 9.1028 -5.2294 -0.0778 19 6 10.5835 -5.2526 -0.3577 20 1 11.0031 -4.5899 -1.1001 21 6 11.4023 -6.1196 0.3341 22 7 10.8913 -6.9269 1.2378 23 14 13.2378 -6.1478 -0.0123 24 1 13.5233 -7.1303 -1.0885 25 1 13.6808 -4.7979 -0.4441 26 1 13.9682 -6.5377 1.2205 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.6542 2.1323 0.0004 31 1 4.1174 2.1342 -0.0010 32 1 5.3479 0.0037 -0.0005 33 1 0.8657 -2.7335 0.7082 34 1 1.3613 -2.9100 -1.0014 35 1 2.8938 -4.4467 -0.0785 36 1 2.8933 -3.6297 1.5201 37 1 3.8755 -3.3068 -1.9996 38 1 6.5037 -5.1466 -0.8940 39 1 6.7594 -3.9056 0.3562 40 1 8.8548 -3.2042 -0.7698 41 1 8.5985 -4.4453 -2.0196 42 1 8.6787 -6.2124 -0.2824 43 1 8.9351 -4.9718 0.9679 44 1 9.9382 -6.9120 1.4180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109343405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:57 Heat of formation + Delta-G solvation = -75.474388 kcal Electronic energy + Delta-G solvation = -24985.354675 eV Core-core repulsion = 21414.314386 eV Total energy + Delta-G solvation = -3571.040289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56464 -37.03292 -36.75380 -35.79875 -34.94816 -33.57246 -32.48927 -32.30579 -29.22101 -27.51434 -27.33483 -26.36184 -23.48776 -22.34602 -21.21837 -21.06288 -20.47009 -19.34476 -17.67347 -17.01647 -16.78033 -15.97782 -15.87657 -15.59070 -15.30536 -14.99716 -14.73288 -14.18290 -13.81932 -13.76307 -13.63525 -13.32601 -13.17968 -12.57986 -12.50851 -12.31817 -12.08595 -12.05653 -11.99023 -11.90639 -11.85053 -11.60235 -11.50943 -11.39094 -11.15861 -10.94815 -10.81587 -10.77789 -10.15429 -10.11529 -9.96030 -9.54120 -8.80980 -8.67722 -8.59872 -8.38055 -6.42210 -4.12064 0.36246 1.17274 1.25214 2.79008 3.42439 3.45886 3.61141 3.61772 3.85770 4.03786 4.27554 4.34540 4.50721 4.62869 4.66542 4.74110 4.86443 4.92649 4.97808 5.04992 5.10068 5.17328 5.29913 5.35842 5.40302 5.47512 5.51259 5.55947 5.60927 5.64192 5.74533 5.86667 5.89238 6.06299 6.12760 6.28986 6.37321 6.42608 6.51482 6.69319 6.82606 6.89889 7.24698 7.36724 8.11949 8.40374 8.81831 9.60224 10.98632 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.002641 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.458644 B =10599.478617 C =10765.787729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.114 4.114 4 C -0.124 4.124 5 C -0.086 4.086 6 C -0.113 4.113 7 C -0.087 4.087 8 C -0.081 4.081 9 C -0.127 4.127 10 C 0.191 3.809 11 H 0.095 0.905 12 N -1.112 6.112 13 S 2.600 3.400 14 O -0.956 6.956 15 O -0.963 6.963 16 C -0.613 4.613 17 C -0.098 4.098 18 C 0.017 3.983 19 C -0.607 4.607 20 H 0.052 0.948 21 C 0.015 3.985 22 N -0.912 5.912 23 Si 1.072 2.928 24 H -0.287 1.287 25 H -0.287 1.287 26 H -0.284 1.284 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.415 0.585 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.330 11.737 -0.803 26.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.132 4.132 4 C -0.142 4.142 5 C -0.104 4.104 6 C -0.115 4.115 7 C -0.088 4.088 8 C -0.118 4.118 9 C -0.166 4.166 10 C 0.084 3.916 11 H 0.113 0.887 12 N -0.868 5.868 13 S 2.695 3.305 14 O -0.945 6.945 15 O -0.953 6.953 16 C -0.745 4.745 17 C -0.137 4.137 18 C -0.021 4.021 19 C -0.645 4.645 20 H 0.070 0.930 21 C -0.188 4.188 22 N -0.549 5.549 23 Si 0.900 3.100 24 H -0.213 1.213 25 H -0.213 1.213 26 H -0.209 1.209 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.155 0.845 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.249 0.751 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.030 0.970 43 H 0.030 0.970 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.414 11.649 -0.903 24.395 hybrid contribution -1.794 0.222 -0.248 1.824 sum -23.208 11.871 -1.150 26.094 Atomic orbital electron populations 1.20747 0.91466 1.02535 1.02105 1.19380 0.95729 0.91913 1.01590 1.20961 0.94343 0.97081 1.00854 1.21086 0.94145 0.97986 1.00945 1.20987 1.01298 0.90962 0.97187 1.20769 0.94184 0.94916 1.01586 1.20379 0.94016 0.94386 0.99995 1.21086 0.98177 0.90451 1.02113 1.22681 0.93086 0.98414 1.02396 1.20069 0.98250 0.90027 0.83301 0.88669 1.55815 1.26931 1.83174 1.20870 1.05354 0.73215 0.76528 0.75387 1.93557 1.81606 1.35013 1.84369 1.93582 1.85257 1.84371 1.32076 1.30597 1.10626 1.17500 1.15731 1.21349 0.87303 1.02876 1.02206 1.19187 0.96081 0.92821 0.94018 1.22094 0.92523 1.24713 1.25180 0.92961 1.25888 1.06552 0.92847 0.93546 1.70771 1.15403 1.37132 1.31553 0.83501 0.74315 0.75934 0.76254 1.21349 1.21347 1.20929 0.91426 0.91671 0.91761 0.86084 0.85800 0.84546 0.90449 0.90149 0.89231 0.89376 0.75113 0.85310 0.85632 0.91368 0.91442 0.97038 0.97028 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.87 36.01 0.36 -0.40 16 2 C -0.09 -0.82 5.88 -104.58 -0.62 -1.44 16 3 C -0.11 -1.11 9.69 -39.62 -0.38 -1.49 16 4 C -0.12 -1.34 10.05 -39.62 -0.40 -1.74 16 5 C -0.09 -1.08 9.75 -39.53 -0.39 -1.47 16 6 C -0.11 -1.31 5.77 -104.20 -0.60 -1.91 16 7 C -0.09 -0.88 6.00 -104.21 -0.63 -1.50 16 8 C -0.08 -0.60 6.28 -26.71 -0.17 -0.77 16 9 C -0.13 -0.93 6.73 -25.20 -0.17 -1.10 16 10 C 0.19 1.92 3.29 -68.06 -0.22 1.70 16 11 H 0.10 0.90 7.24 -51.93 -0.38 0.52 16 12 N -1.11 -11.99 5.39 -5.01 -0.03 -12.02 16 13 S 2.60 37.65 5.39 -107.50 -0.58 37.07 16 14 O -0.96 -16.13 16.38 -57.54 -0.94 -17.07 16 15 O -0.96 -17.00 18.08 -57.54 -1.04 -18.04 16 16 C -0.61 -9.19 5.97 37.15 0.22 -8.96 16 17 C -0.10 -1.99 5.16 -26.73 -0.14 -2.13 16 18 C 0.02 0.43 4.28 -27.88 -0.12 0.31 16 19 C -0.61 -17.32 9.11 -34.44 -0.31 -17.63 16 20 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 22 N -0.91 -27.77 13.65 55.43 0.76 -27.01 16 23 Si 1.07 25.37 29.90 -169.99 -5.08 20.29 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.39 7.29 -51.93 -0.38 0.01 16 29 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.14 1.86 6.91 -52.49 -0.36 1.49 16 33 H 0.08 0.47 7.62 -51.93 -0.40 0.07 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.41 3.74 8.81 -34.47 -0.30 3.44 16 38 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 39 H 0.13 1.64 7.48 -51.93 -0.39 1.25 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 43 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 44 H 0.27 8.05 7.22 -40.82 -0.29 7.76 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -36.06 370.87 -11.74 -47.80 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.76 Total: 1.56 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: -3.66 Total: -38.18 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.73 Total: -39.03 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.98 Total: -35.11 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.29 kcal Atomic # 16 Polarization: 37.65 SS G_CDS: -0.58 Total: 37.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.06 -11.74 -47.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109343405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.675 kcal (2) G-P(sol) polarization free energy of solvation -36.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds