Wall clock time and date at job start Tue Mar 31 2020 13:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38147 * 119.89060 * 2 1 4 4 C 1.38216 * 119.93450 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.93396 * 359.97438 * 4 3 2 6 6 C 1.38456 * 120.21753 * 0.02562 * 5 4 3 7 7 C 1.38267 * 119.84588 * 359.97438 * 6 5 4 8 8 C 1.51365 * 109.74883 * 179.97438 * 7 6 5 9 9 C 1.54606 * 105.19198 * 17.19852 * 8 7 6 10 10 C 1.51368 * 130.39974 * 179.97438 * 6 5 4 11 11 H 1.08997 * 110.30016 * 43.79273 * 10 6 5 12 12 N 1.46496 * 110.30284 * 281.73746 * 10 6 5 13 13 S 1.65601 * 120.00005 * 97.77708 * 12 10 6 14 14 O 1.42099 * 104.27614 * 308.92528 * 13 12 10 15 15 O 1.42098 * 104.27658 * 181.06900 * 13 12 10 16 16 C 1.81402 * 104.45063 * 64.99501 * 13 12 10 17 17 C 1.52992 * 109.47209 * 179.97438 * 16 13 12 18 18 C 1.53004 * 109.47319 * 180.02562 * 17 16 13 19 19 C 1.50700 * 109.47208 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99770 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00083 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00278 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46986 * 270.00126 * 23 21 19 25 25 H 1.48496 * 109.47029 * 30.00143 * 23 21 19 26 26 H 1.48499 * 109.47352 * 149.99973 * 23 21 19 27 27 H 1.08999 * 109.47116 * 90.00755 * 1 2 3 28 28 H 1.09005 * 109.46631 * 210.00112 * 1 2 3 29 29 H 1.08995 * 109.47139 * 329.99897 * 1 2 3 30 30 H 1.08002 * 120.03506 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.02996 * 179.97438 * 4 3 2 32 32 H 1.07997 * 119.89255 * 180.02562 * 5 4 3 33 33 H 1.08999 * 110.30714 * 136.11173 * 8 7 6 34 34 H 1.09005 * 110.30189 * 258.16619 * 8 7 6 35 35 H 1.08992 * 110.90380 * 215.43659 * 9 8 7 36 36 H 1.09002 * 110.84689 * 91.81387 * 9 8 7 37 37 H 0.97001 * 120.00162 * 277.76914 * 12 10 6 38 38 H 1.09009 * 109.46681 * 59.99982 * 16 13 12 39 39 H 1.08998 * 109.47443 * 300.00153 * 16 13 12 40 40 H 1.09000 * 109.47364 * 60.00146 * 17 16 13 41 41 H 1.08998 * 109.47610 * 300.00208 * 17 16 13 42 42 H 1.08994 * 109.47074 * 60.00408 * 18 17 16 43 43 H 1.08998 * 109.47285 * 300.00244 * 18 17 16 44 44 H 0.97005 * 119.99661 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1977 0.0000 4 6 3.5776 1.1988 -0.0005 5 6 4.2679 0.0021 -0.0005 6 6 3.5797 -1.1993 -0.0005 7 6 2.1970 -1.2003 0.0000 8 6 1.6866 -2.6253 -0.0008 9 6 2.8920 -3.4876 0.4394 10 6 4.0923 -2.6235 -0.0010 11 1 4.9150 -2.7296 0.7061 12 7 4.5269 -3.0069 -1.3465 13 16 6.1305 -2.9283 -1.7525 14 8 6.5239 -1.6164 -1.3741 15 8 6.1685 -3.3412 -3.1116 16 6 6.9276 -4.1633 -0.6894 17 6 8.4306 -4.1873 -0.9740 18 6 9.1028 -5.2294 -0.0778 19 6 10.5835 -5.2526 -0.3577 20 1 11.0031 -4.5899 -1.1001 21 6 11.4023 -6.1196 0.3341 22 7 10.8913 -6.9269 1.2378 23 14 13.2378 -6.1478 -0.0123 24 1 13.5233 -7.1303 -1.0885 25 1 13.6808 -4.7979 -0.4441 26 1 13.9682 -6.5377 1.2205 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.6542 2.1323 0.0004 31 1 4.1174 2.1342 -0.0010 32 1 5.3479 0.0037 -0.0005 33 1 0.8657 -2.7335 0.7082 34 1 1.3613 -2.9100 -1.0014 35 1 2.8938 -4.4467 -0.0785 36 1 2.8933 -3.6297 1.5201 37 1 3.8755 -3.3068 -1.9996 38 1 6.5037 -5.1466 -0.8940 39 1 6.7594 -3.9056 0.3562 40 1 8.8548 -3.2042 -0.7698 41 1 8.5985 -4.4453 -2.0196 42 1 8.6787 -6.2124 -0.2824 43 1 8.9351 -4.9718 0.9679 44 1 9.9382 -6.9120 1.4180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109343405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:56 Heat of formation + Delta-G solvation = -98.987140 kcal Electronic energy + Delta-G solvation = -24986.374264 eV Core-core repulsion = 21414.314386 eV Total energy + Delta-G solvation = -3572.059878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.29207 -38.25769 -37.58355 -37.10377 -36.79473 -34.32239 -34.25785 -33.25755 -29.91004 -29.33568 -28.00515 -27.06606 -25.48915 -23.02148 -22.81208 -21.96856 -21.21667 -20.48440 -19.16284 -18.62190 -17.79202 -17.24713 -16.86067 -16.54154 -16.18887 -15.84154 -15.73549 -15.67882 -15.37014 -15.17634 -14.41348 -14.36270 -13.95547 -13.89774 -13.66184 -13.39624 -13.25404 -13.18804 -13.12736 -13.11777 -13.04502 -12.68052 -12.62890 -12.53041 -12.27637 -12.03268 -11.95695 -11.93013 -11.84079 -11.68809 -11.49711 -10.78044 -10.57428 -10.49948 -9.58802 -9.42365 -8.72517 -6.43451 -0.83814 0.37870 0.46718 1.51484 1.60088 1.73836 1.78397 2.53524 2.67764 2.81359 3.12146 3.16918 3.36792 3.58834 3.62093 3.77940 3.95180 4.04097 4.13650 4.17820 4.23640 4.28280 4.36552 4.48273 4.51301 4.74066 4.74527 4.79902 4.82243 4.86106 4.90039 4.95405 4.99805 5.11372 5.20260 5.24415 5.28093 5.35783 5.38080 5.62189 5.63628 5.73307 5.94059 6.03630 6.14303 6.14899 6.54556 7.37308 8.69238 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.002641 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.458644 B =10599.478617 C =10765.787729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.093 4.093 3 C -0.119 4.119 4 C -0.137 4.137 5 C -0.116 4.116 6 C -0.133 4.133 7 C -0.093 4.093 8 C -0.079 4.079 9 C -0.121 4.121 10 C 0.180 3.820 11 H 0.097 0.903 12 N -1.095 6.095 13 S 2.625 3.375 14 O -0.982 6.982 15 O -0.994 6.994 16 C -0.610 4.610 17 C -0.099 4.099 18 C 0.015 3.985 19 C -0.629 4.629 20 H 0.050 0.950 21 C -0.036 4.036 22 N -0.936 5.936 23 Si 1.117 2.883 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.280 1.280 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.144 0.856 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.426 0.574 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.001 0.999 43 H 0.001 0.999 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.303 11.658 -0.834 27.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.155 4.155 5 C -0.135 4.135 6 C -0.135 4.135 7 C -0.093 4.093 8 C -0.116 4.116 9 C -0.159 4.159 10 C 0.073 3.927 11 H 0.115 0.885 12 N -0.855 5.855 13 S 2.721 3.279 14 O -0.971 6.971 15 O -0.984 6.984 16 C -0.741 4.741 17 C -0.139 4.139 18 C -0.023 4.023 19 C -0.667 4.667 20 H 0.068 0.932 21 C -0.234 4.234 22 N -0.573 5.573 23 Si 0.938 3.062 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.205 1.205 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.161 0.839 31 H 0.151 0.849 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.263 0.737 38 H 0.168 0.832 39 H 0.164 0.836 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -23.408 11.572 -0.947 26.129 hybrid contribution -1.273 0.316 -0.212 1.329 sum -24.681 11.887 -1.159 27.419 Atomic orbital electron populations 1.20792 0.89238 1.03688 1.02870 1.19813 0.97452 0.91668 1.00371 1.21278 0.93882 0.98418 1.00140 1.21288 0.95107 0.97896 1.01219 1.21022 1.00515 0.92497 0.99492 1.20994 0.95253 0.95074 1.02202 1.20766 0.93441 0.96020 0.99108 1.21168 0.98612 0.88494 1.03302 1.22741 0.91320 0.98515 1.03368 1.20380 0.99679 0.90162 0.82507 0.88478 1.55394 1.25355 1.82879 1.21854 1.04363 0.73837 0.75522 0.74228 1.93534 1.82660 1.36411 1.84524 1.93534 1.86163 1.84652 1.34080 1.30525 1.06978 1.19216 1.17374 1.21173 0.90708 1.01071 1.00914 1.19131 0.95024 0.93768 0.94396 1.22579 0.94605 1.24521 1.24982 0.93190 1.27402 1.10941 0.92229 0.92849 1.70893 1.14935 1.38475 1.32977 0.82931 0.69355 0.77162 0.76712 1.19655 1.19614 1.20529 0.90703 0.90534 0.90677 0.83858 0.84915 0.86776 0.88533 0.89080 0.87490 0.88113 0.73747 0.83242 0.83585 0.91657 0.91773 0.98042 0.98027 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.87 71.24 0.70 -0.45 16 2 C -0.09 -1.60 5.88 -19.84 -0.12 -1.71 16 3 C -0.12 -2.17 9.69 22.24 0.22 -1.95 16 4 C -0.14 -3.02 10.05 22.24 0.22 -2.79 16 5 C -0.12 -3.03 9.75 22.30 0.22 -2.82 16 6 C -0.13 -3.01 5.77 -19.59 -0.11 -3.13 16 7 C -0.09 -1.69 6.00 -19.60 -0.12 -1.81 16 8 C -0.08 -0.92 6.28 30.61 0.19 -0.73 16 9 C -0.12 -1.41 6.73 31.59 0.21 -1.20 16 10 C 0.18 3.36 3.29 44.91 0.15 3.51 16 11 H 0.10 1.74 7.24 -2.39 -0.02 1.73 16 12 N -1.09 -22.16 5.39 -169.76 -0.91 -23.08 16 13 S 2.63 75.11 5.39 -56.49 -0.30 74.81 16 14 O -0.98 -33.75 16.38 -127.65 -2.09 -35.84 16 15 O -0.99 -34.81 18.08 -127.65 -2.31 -37.11 16 16 C -0.61 -17.81 5.97 71.98 0.43 -17.38 16 17 C -0.10 -4.06 5.16 30.59 0.16 -3.91 16 18 C 0.02 0.77 4.28 29.85 0.13 0.89 16 19 C -0.63 -36.33 9.11 25.60 0.23 -36.10 16 20 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 21 C -0.04 -2.12 5.46 84.65 0.46 -1.66 16 22 N -0.94 -57.56 13.65 21.45 0.29 -57.27 16 23 Si 1.12 50.66 29.90 68.60 2.05 52.72 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.64 7.29 -2.38 -0.02 0.62 16 29 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 30 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.11 3.36 6.91 -2.91 -0.02 3.34 16 33 H 0.10 0.79 7.62 -2.39 -0.02 0.77 16 34 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.11 0.91 8.08 -2.39 -0.02 0.89 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.43 6.87 8.81 -96.74 -0.85 6.02 16 38 H 0.15 3.74 8.14 -2.39 -0.02 3.72 16 39 H 0.15 3.64 7.48 -2.39 -0.02 3.62 16 40 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.00 0.07 8.01 -2.39 -0.02 0.05 16 43 H 0.00 0.08 8.01 -2.39 -0.02 0.06 16 44 H 0.26 15.86 7.22 -92.70 -0.67 15.19 16 Total: -1.00 -78.85 370.87 -0.05 -78.90 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.24 Total: 18.09 kcal Atomic # 6 Polarization: -74.19 SS G_CDS: 2.98 Total: -71.21 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -0.62 Total: -80.35 kcal Atomic # 8 Polarization: -68.55 SS G_CDS: -4.40 Total: -72.95 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.05 Total: 52.72 kcal Atomic # 16 Polarization: 75.11 SS G_CDS: -0.30 Total: 74.81 kcal Total: -78.85 -0.05 -78.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109343405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.085 kcal (2) G-P(sol) polarization free energy of solvation -78.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds