Wall clock time and date at job start Tue Mar 31 2020 14:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 119.99693 * 2 1 4 4 C 1.38220 * 119.99823 * 180.21013 * 3 2 1 5 5 C 1.38256 * 119.99726 * 359.86510 * 4 3 2 6 6 C 1.38210 * 120.00265 * 359.94937 * 5 4 3 7 7 C 1.38218 * 120.00415 * 179.82091 * 2 1 3 8 8 C 1.50700 * 119.99596 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.87311 * 327.68037 * 8 7 2 10 10 C 1.54369 * 109.89914 * 88.82261 * 8 7 2 11 11 C 1.55158 * 102.91724 * 141.57626 * 10 8 7 12 12 C 1.54909 * 101.61875 * 324.54460 * 11 10 8 13 13 N 1.47025 * 109.88210 * 206.66288 * 8 7 2 14 14 S 1.65600 * 125.64853 * 61.60323 * 13 8 7 15 15 O 1.42099 * 104.27866 * 212.08207 * 14 13 8 16 16 O 1.42101 * 104.27781 * 339.94526 * 14 13 8 17 17 C 1.81400 * 104.44639 * 96.00929 * 14 13 8 18 18 C 1.53002 * 109.47286 * 180.41054 * 17 14 13 19 19 C 1.50699 * 109.47075 * 180.02562 * 18 17 14 20 20 H 1.07991 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99552 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00223 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99704 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47350 * 60.00331 * 23 21 19 25 25 H 1.48507 * 109.46949 * 180.02562 * 23 21 19 26 26 H 1.48510 * 109.47158 * 299.99891 * 23 21 19 27 27 H 1.08998 * 109.46319 * 270.18134 * 1 2 3 28 28 H 1.08992 * 109.47267 * 30.17844 * 1 2 3 29 29 H 1.09000 * 109.46921 * 150.18921 * 1 2 3 30 30 H 1.07997 * 120.00140 * 0.04809 * 3 2 1 31 31 H 1.07994 * 119.99684 * 179.83681 * 4 3 2 32 32 H 1.08001 * 119.99358 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99880 * 180.02562 * 6 5 4 34 34 H 1.08994 * 110.70664 * 23.23215 * 10 8 7 35 35 H 1.09001 * 110.75466 * 259.94289 * 10 8 7 36 36 H 1.09000 * 111.00167 * 206.45289 * 11 10 8 37 37 H 1.09001 * 111.00678 * 82.64475 * 11 10 8 38 38 H 1.08998 * 110.36706 * 155.83136 * 12 11 10 39 39 H 1.08998 * 110.36672 * 278.15342 * 12 11 10 40 40 H 1.08995 * 109.47746 * 300.41492 * 17 14 13 41 41 H 1.09009 * 109.46738 * 60.41622 * 17 14 13 42 42 H 1.08995 * 109.47085 * 300.00842 * 18 17 14 43 43 H 1.09003 * 109.46431 * 60.00300 * 18 17 14 44 44 H 0.96999 * 119.99829 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0044 5 6 4.2717 0.0001 -0.0060 6 6 3.5807 -1.1969 -0.0021 7 6 2.1982 -1.1969 0.0037 8 6 1.4447 -2.5020 0.0084 9 1 0.5094 -2.3880 0.5564 10 6 1.1556 -2.9470 -1.4412 11 6 1.3547 -4.4845 -1.3783 12 6 2.5194 -4.6070 -0.3644 13 7 2.2650 -3.5508 0.6320 14 16 2.8132 -3.5458 2.1946 15 8 4.0603 -4.2240 2.1307 16 8 2.7401 -2.1821 2.5874 17 6 1.5959 -4.5362 3.1045 18 6 1.9906 -4.5988 4.5814 19 6 0.9796 -5.4220 5.3371 20 1 0.1399 -5.8575 4.8161 21 6 1.1269 -5.6193 6.6937 22 7 2.1493 -5.0887 7.3283 23 14 -0.1259 -6.6405 7.6304 24 1 -0.1627 -8.0151 7.0699 25 1 0.2565 -6.7000 9.0641 26 1 -1.4679 -6.0174 7.5020 27 1 -0.3632 0.0033 1.0277 28 1 -0.3633 0.8883 -0.5166 29 1 -0.3633 -0.8917 -0.5109 30 1 1.6582 2.1327 0.0008 31 1 4.1203 2.1327 -0.0071 32 1 5.3517 0.0002 -0.0098 33 1 4.1207 -2.1321 -0.0029 34 1 1.8663 -2.4941 -2.1324 35 1 0.1317 -2.7020 -1.7236 36 1 1.6411 -4.8814 -2.3522 37 1 0.4582 -4.9797 -1.0053 38 1 2.5070 -5.5878 0.1109 39 1 3.4745 -4.4375 -0.8615 40 1 0.6114 -4.0780 3.0107 41 1 1.5678 -5.5452 2.6929 42 1 2.9751 -5.0570 4.6752 43 1 2.0187 -3.5898 4.9929 44 1 2.2530 -5.2278 8.2826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111331149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:13 Heat of formation + Delta-G solvation = -53.545836 kcal Electronic energy + Delta-G solvation = -26129.571507 eV Core-core repulsion = 22559.482112 eV Total energy + Delta-G solvation = -3570.089395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.05210 -37.82366 -36.53851 -35.37945 -33.89025 -33.00273 -31.59177 -31.14145 -30.83633 -28.14306 -26.70872 -25.59237 -23.29545 -22.02427 -21.48993 -21.28072 -20.60769 -18.45033 -17.55132 -16.92571 -16.45498 -15.94710 -15.32070 -15.26757 -14.88141 -14.69877 -14.54958 -13.96829 -13.73867 -13.59469 -13.34251 -13.24211 -13.00200 -12.59840 -12.49510 -12.35555 -12.14030 -11.75156 -11.68736 -11.51403 -11.48584 -11.32536 -11.25815 -11.11153 -11.06759 -10.96118 -10.84116 -10.72158 -10.41859 -10.37536 -9.76354 -9.35449 -8.87678 -8.59669 -8.50169 -8.39317 -6.12202 -4.18091 0.74930 1.46417 1.53438 3.06552 3.26966 3.31684 3.33566 3.83979 4.27641 4.30651 4.38561 4.50555 4.64479 4.84685 4.89188 4.93926 5.00578 5.11898 5.21671 5.22765 5.30330 5.39396 5.50068 5.57012 5.61326 5.65863 5.66667 5.67832 5.70854 5.73968 5.82819 5.84613 6.04483 6.09244 6.15159 6.26608 6.46599 6.48690 6.60043 6.63900 6.79311 7.13843 7.29490 7.35818 7.80290 8.17502 8.84950 9.46537 10.98846 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.003798 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.550511 B = 7369.813443 C = 7743.368785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.076 4.076 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.097 4.097 7 C -0.082 4.082 8 C 0.192 3.808 9 H 0.085 0.915 10 C -0.118 4.118 11 C -0.131 4.131 12 C 0.120 3.880 13 N -1.014 6.014 14 S 2.598 3.402 15 O -0.963 6.963 16 O -0.947 6.947 17 C -0.591 4.591 18 C 0.029 3.971 19 C -0.521 4.521 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 7.448 -20.895 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.115 4.115 7 C -0.084 4.084 8 C 0.086 3.914 9 H 0.103 0.897 10 C -0.157 4.157 11 C -0.170 4.170 12 C -0.006 4.006 13 N -0.849 5.849 14 S 2.697 3.303 15 O -0.954 6.954 16 O -0.937 6.937 17 C -0.724 4.724 18 C -0.010 4.010 19 C -0.560 4.560 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.201 1.201 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.653 7.906 -20.353 21.897 hybrid contribution -1.058 -0.906 0.771 1.592 sum -2.711 7.000 -19.581 20.971 Atomic orbital electron populations 1.20870 0.91449 1.02509 1.02775 1.19598 0.95778 0.92433 0.99809 1.20916 0.94237 0.97130 1.01598 1.21053 0.94345 0.97769 1.00627 1.21057 0.99697 0.92543 1.00726 1.20883 0.93726 0.98060 0.98844 1.19885 0.93996 0.94109 1.00394 1.20157 0.92604 0.84150 0.94513 0.89712 1.22674 1.02464 0.95807 0.94716 1.22812 0.98867 0.95869 0.99426 1.21954 0.98319 0.90538 0.89766 1.59071 1.68685 1.29305 1.27830 1.05581 0.76512 0.75877 0.72282 1.93540 1.39652 1.77070 1.85107 1.93590 1.87211 1.31958 1.80965 1.30507 1.15768 1.13455 1.12683 1.18950 0.98439 0.99230 0.84370 1.20958 1.09524 1.32566 0.92999 0.92106 1.25069 0.95803 0.95864 0.97696 1.69947 1.29078 1.44043 1.09771 0.86528 0.81383 0.80577 0.78774 1.20053 1.21025 1.20060 0.90737 0.91603 0.91451 0.86313 0.86406 0.86361 0.86689 0.90368 0.90026 0.90027 0.90345 0.90560 0.91412 0.86323 0.86464 0.94990 0.94847 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.21 36.01 0.33 -0.84 16 2 C -0.08 -0.97 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.48 9.70 -39.58 -0.38 -1.87 16 4 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 5 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 6 C -0.10 -1.46 8.03 -39.59 -0.32 -1.78 16 7 C -0.08 -1.16 3.70 -104.62 -0.39 -1.55 16 8 C 0.19 2.38 2.46 -68.08 -0.17 2.22 16 9 H 0.09 1.00 6.86 -51.93 -0.36 0.64 16 10 C -0.12 -1.03 6.18 -24.87 -0.15 -1.19 16 11 C -0.13 -1.07 7.08 -24.58 -0.17 -1.24 16 12 C 0.12 1.34 6.96 -2.53 -0.02 1.32 16 13 N -1.01 -14.42 2.29 -105.61 -0.24 -14.66 16 14 S 2.60 49.42 5.12 -107.50 -0.55 48.87 16 15 O -0.96 -20.79 17.70 -57.54 -1.02 -21.81 16 16 O -0.95 -20.34 15.46 -57.54 -0.89 -21.23 16 17 C -0.59 -11.81 6.12 37.16 0.23 -11.58 16 18 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 19 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 23 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 29 H 0.07 0.56 6.03 -51.93 -0.31 0.25 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.12 1.76 7.18 -52.49 -0.38 1.39 16 34 H 0.08 0.68 7.84 -51.93 -0.41 0.28 16 35 H 0.08 0.56 7.68 -51.93 -0.40 0.16 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.12 2.14 8.14 -51.93 -0.42 1.72 16 41 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 366.87 15.07 5.53 5.53 Total: -1.00 -35.37 366.87 -11.35 -46.71 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.89 Total: 1.13 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: -3.00 Total: -34.81 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.49 Total: -40.69 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -1.91 Total: -43.04 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 49.42 SS G_CDS: -0.55 Total: 48.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.37 -11.35 -46.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111331149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.834 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds