Wall clock time and date at job start Tue Mar 31 2020 14:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 119.99693 * 2 1 4 4 C 1.38220 * 119.99823 * 180.21013 * 3 2 1 5 5 C 1.38256 * 119.99726 * 359.86510 * 4 3 2 6 6 C 1.38210 * 120.00265 * 359.94937 * 5 4 3 7 7 C 1.38218 * 120.00415 * 179.82091 * 2 1 3 8 8 C 1.50700 * 119.99596 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.87311 * 327.68037 * 8 7 2 10 10 C 1.54369 * 109.89914 * 88.82261 * 8 7 2 11 11 C 1.55158 * 102.91724 * 141.57626 * 10 8 7 12 12 C 1.54909 * 101.61875 * 324.54460 * 11 10 8 13 13 N 1.47025 * 109.88210 * 206.66288 * 8 7 2 14 14 S 1.65600 * 125.64853 * 61.60323 * 13 8 7 15 15 O 1.42099 * 104.27866 * 212.08207 * 14 13 8 16 16 O 1.42101 * 104.27781 * 339.94526 * 14 13 8 17 17 C 1.81400 * 104.44639 * 96.00929 * 14 13 8 18 18 C 1.53002 * 109.47286 * 180.41054 * 17 14 13 19 19 C 1.50699 * 109.47075 * 180.02562 * 18 17 14 20 20 H 1.07991 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99552 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00223 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99704 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47350 * 60.00331 * 23 21 19 25 25 H 1.48507 * 109.46949 * 180.02562 * 23 21 19 26 26 H 1.48510 * 109.47158 * 299.99891 * 23 21 19 27 27 H 1.08998 * 109.46319 * 270.18134 * 1 2 3 28 28 H 1.08992 * 109.47267 * 30.17844 * 1 2 3 29 29 H 1.09000 * 109.46921 * 150.18921 * 1 2 3 30 30 H 1.07997 * 120.00140 * 0.04809 * 3 2 1 31 31 H 1.07994 * 119.99684 * 179.83681 * 4 3 2 32 32 H 1.08001 * 119.99358 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99880 * 180.02562 * 6 5 4 34 34 H 1.08994 * 110.70664 * 23.23215 * 10 8 7 35 35 H 1.09001 * 110.75466 * 259.94289 * 10 8 7 36 36 H 1.09000 * 111.00167 * 206.45289 * 11 10 8 37 37 H 1.09001 * 111.00678 * 82.64475 * 11 10 8 38 38 H 1.08998 * 110.36706 * 155.83136 * 12 11 10 39 39 H 1.08998 * 110.36672 * 278.15342 * 12 11 10 40 40 H 1.08995 * 109.47746 * 300.41492 * 17 14 13 41 41 H 1.09009 * 109.46738 * 60.41622 * 17 14 13 42 42 H 1.08995 * 109.47085 * 300.00842 * 18 17 14 43 43 H 1.09003 * 109.46431 * 60.00300 * 18 17 14 44 44 H 0.96999 * 119.99829 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0044 5 6 4.2717 0.0001 -0.0060 6 6 3.5807 -1.1969 -0.0021 7 6 2.1982 -1.1969 0.0037 8 6 1.4447 -2.5020 0.0084 9 1 0.5094 -2.3880 0.5564 10 6 1.1556 -2.9470 -1.4412 11 6 1.3547 -4.4845 -1.3783 12 6 2.5194 -4.6070 -0.3644 13 7 2.2650 -3.5508 0.6320 14 16 2.8132 -3.5458 2.1946 15 8 4.0603 -4.2240 2.1307 16 8 2.7401 -2.1821 2.5874 17 6 1.5959 -4.5362 3.1045 18 6 1.9906 -4.5988 4.5814 19 6 0.9796 -5.4220 5.3371 20 1 0.1399 -5.8575 4.8161 21 6 1.1269 -5.6193 6.6937 22 7 2.1493 -5.0887 7.3283 23 14 -0.1259 -6.6405 7.6304 24 1 -0.1627 -8.0151 7.0699 25 1 0.2565 -6.7000 9.0641 26 1 -1.4679 -6.0174 7.5020 27 1 -0.3632 0.0033 1.0277 28 1 -0.3633 0.8883 -0.5166 29 1 -0.3633 -0.8917 -0.5109 30 1 1.6582 2.1327 0.0008 31 1 4.1203 2.1327 -0.0071 32 1 5.3517 0.0002 -0.0098 33 1 4.1207 -2.1321 -0.0029 34 1 1.8663 -2.4941 -2.1324 35 1 0.1317 -2.7020 -1.7236 36 1 1.6411 -4.8814 -2.3522 37 1 0.4582 -4.9797 -1.0053 38 1 2.5070 -5.5878 0.1109 39 1 3.4745 -4.4375 -0.8615 40 1 0.6114 -4.0780 3.0107 41 1 1.5678 -5.5452 2.6929 42 1 2.9751 -5.0570 4.6752 43 1 2.0187 -3.5898 4.9929 44 1 2.2530 -5.2278 8.2826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111331149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:13 Heat of formation + Delta-G solvation = -75.849386 kcal Electronic energy + Delta-G solvation = -26130.538662 eV Core-core repulsion = 22559.482112 eV Total energy + Delta-G solvation = -3571.056550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.99782 -38.75315 -38.17030 -37.01870 -35.94009 -33.91814 -33.18643 -32.47303 -31.79946 -29.03317 -27.66181 -27.53624 -24.31819 -23.64543 -22.56709 -22.28088 -21.62477 -19.80167 -19.10518 -18.35557 -17.86897 -17.18596 -16.87483 -16.58783 -16.48329 -15.78899 -15.75276 -15.25850 -14.92077 -14.69133 -14.50100 -14.36037 -14.12921 -13.95461 -13.77622 -13.47572 -13.28865 -13.15548 -13.07294 -12.93329 -12.92295 -12.81770 -12.59976 -12.49825 -12.29152 -12.17537 -12.02989 -11.91247 -11.78755 -11.76470 -11.48199 -11.19922 -10.66890 -10.06784 -9.61729 -9.37042 -8.28418 -6.43731 -0.78166 0.47948 0.51938 1.39370 1.43457 1.51749 1.73071 2.36512 2.81121 2.86785 3.04397 3.06504 3.63361 3.67400 3.85056 3.97121 3.98687 4.08802 4.09515 4.16952 4.21092 4.34606 4.48817 4.61718 4.62720 4.67675 4.77832 4.84788 4.89336 4.95091 4.98979 5.03016 5.07022 5.14698 5.19481 5.20205 5.23196 5.33490 5.41124 5.50472 5.62693 5.64379 5.65056 5.79408 6.01873 6.18310 6.69398 7.26855 8.83896 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.003798 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.550511 B = 7369.813443 C = 7743.368785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.088 4.088 3 C -0.128 4.128 4 C -0.127 4.127 5 C -0.144 4.144 6 C -0.126 4.126 7 C -0.098 4.098 8 C 0.181 3.819 9 H 0.093 0.907 10 C -0.108 4.108 11 C -0.118 4.118 12 C 0.103 3.897 13 N -1.007 6.007 14 S 2.619 3.381 15 O -0.997 6.997 16 O -0.977 6.977 17 C -0.589 4.589 18 C 0.023 3.977 19 C -0.542 4.542 20 H 0.077 0.923 21 C -0.004 4.004 22 N -0.935 5.935 23 Si 0.976 3.024 24 H -0.261 1.261 25 H -0.283 1.283 26 H -0.261 1.261 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.002 0.998 43 H 0.004 0.996 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 7.103 -22.875 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.145 4.145 5 C -0.162 4.162 6 C -0.144 4.144 7 C -0.099 4.099 8 C 0.076 3.924 9 H 0.111 0.889 10 C -0.147 4.147 11 C -0.157 4.157 12 C -0.021 4.021 13 N -0.845 5.845 14 S 2.719 3.281 15 O -0.987 6.987 16 O -0.967 6.967 17 C -0.721 4.721 18 C -0.016 4.016 19 C -0.580 4.580 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.799 3.201 24 H -0.186 1.186 25 H -0.209 1.209 26 H -0.186 1.186 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.144 0.856 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.020 0.980 43 H 0.022 0.978 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.566 7.552 -22.338 24.018 hybrid contribution -0.094 -0.728 1.309 1.501 sum -4.660 6.824 -21.029 22.594 Atomic orbital electron populations 1.20943 0.89217 1.04532 1.02849 1.20034 0.97578 0.92142 0.99092 1.21348 0.94376 0.98247 1.00579 1.21394 0.94955 0.98188 0.99998 1.21322 1.00471 0.93000 1.01363 1.20973 0.94710 0.97947 1.00809 1.20166 0.93751 0.95535 1.00453 1.20545 0.92053 0.82975 0.96840 0.88915 1.22700 1.04116 0.96061 0.91851 1.22827 0.97758 0.95532 0.99544 1.22330 1.00114 0.89733 0.89912 1.58602 1.68796 1.30932 1.26169 1.04548 0.75739 0.74638 0.73209 1.93487 1.41560 1.77552 1.86130 1.93538 1.87460 1.33356 1.82389 1.30405 1.17258 1.15582 1.08829 1.18793 0.97111 0.97100 0.88585 1.21469 1.10161 1.32645 0.93760 0.90486 1.26162 0.97969 0.97098 0.98973 1.70106 1.31389 1.45757 1.10207 0.85332 0.78689 0.79099 0.76950 1.18595 1.20864 1.18590 0.91454 0.89426 0.89731 0.83665 0.84017 0.85585 0.88206 0.90398 0.87117 0.87434 0.89058 0.90142 0.91474 0.84153 0.84266 0.97951 0.97758 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.03 9.21 71.24 0.66 -1.37 16 2 C -0.09 -2.14 5.88 -19.86 -0.12 -2.25 16 3 C -0.13 -2.95 9.70 22.27 0.22 -2.74 16 4 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 5 C -0.14 -4.08 10.05 22.27 0.22 -3.86 16 6 C -0.13 -3.92 8.03 22.27 0.18 -3.74 16 7 C -0.10 -2.70 3.70 -19.87 -0.07 -2.77 16 8 C 0.18 4.21 2.46 44.61 0.11 4.32 16 9 H 0.09 1.98 6.86 -2.39 -0.02 1.97 16 10 C -0.11 -1.55 6.18 31.80 0.20 -1.36 16 11 C -0.12 -1.50 7.08 31.99 0.23 -1.28 16 12 C 0.10 2.17 6.96 86.86 0.60 2.78 16 13 N -1.01 -28.05 2.29 -488.05 -1.12 -29.16 16 14 S 2.62 102.54 5.12 -56.49 -0.29 102.25 16 15 O -1.00 -45.02 17.70 -127.65 -2.26 -47.28 16 16 O -0.98 -43.68 15.46 -127.65 -1.97 -45.66 16 17 C -0.59 -23.64 6.12 71.98 0.44 -23.20 16 18 C 0.02 1.25 4.98 29.85 0.15 1.40 16 19 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 20 H 0.08 3.98 7.74 -2.92 -0.02 3.96 16 21 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 22 N -0.94 -57.89 13.29 21.45 0.28 -57.61 16 23 Si 0.98 43.48 29.54 68.60 2.03 45.50 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.10 8.09 -2.39 -0.02 1.08 16 29 H 0.08 1.11 6.03 -2.39 -0.01 1.10 16 30 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 31 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.10 3.27 7.18 -2.91 -0.02 3.25 16 34 H 0.08 1.16 7.84 -2.39 -0.02 1.14 16 35 H 0.11 0.99 7.68 -2.39 -0.02 0.98 16 36 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.14 4.95 8.14 -2.39 -0.02 4.93 16 41 H 0.14 4.89 8.14 -2.39 -0.02 4.87 16 42 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -80.15 366.87 1.37 -78.77 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.97 Total: 20.26 kcal Atomic # 6 Polarization: -70.82 SS G_CDS: 3.73 Total: -67.09 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -0.83 Total: -86.77 kcal Atomic # 8 Polarization: -88.70 SS G_CDS: -4.23 Total: -92.93 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 102.54 SS G_CDS: -0.29 Total: 102.25 kcal Total: -80.15 1.37 -78.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111331149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.923 kcal (2) G-P(sol) polarization free energy of solvation -80.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds