Wall clock time and date at job start Tue Mar 31 2020 14:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38263 * 120.00008 * 2 1 4 4 C 1.38213 * 120.00008 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99735 * 359.73631 * 4 3 2 6 6 C 1.38214 * 119.99799 * 0.51529 * 5 4 3 7 7 C 1.50706 * 119.99612 * 179.76423 * 6 5 4 8 8 H 1.09004 * 109.87104 * 198.70448 * 7 6 5 9 9 C 1.54327 * 109.88258 * 77.53399 * 7 6 5 10 10 C 1.55155 * 102.93990 * 218.38654 * 9 7 6 11 11 C 1.54910 * 101.58186 * 35.50139 * 10 9 7 12 12 N 1.47015 * 109.88389 * 319.72118 * 7 6 5 13 13 S 1.65601 * 125.64981 * 298.38108 * 12 7 6 14 14 O 1.42095 * 104.27619 * 26.07223 * 13 12 7 15 15 O 1.42106 * 104.27572 * 153.92638 * 13 12 7 16 16 C 1.81395 * 104.44992 * 269.99690 * 13 12 7 17 17 C 1.52997 * 109.47346 * 179.97438 * 16 13 12 18 18 C 1.50696 * 109.47372 * 180.02562 * 17 16 13 19 19 H 1.07990 * 120.00123 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99854 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00408 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99915 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46970 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47127 * 120.00313 * 22 20 18 25 25 H 1.48504 * 109.47078 * 240.00302 * 22 20 18 26 26 C 1.38210 * 120.00154 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47175 * 270.03148 * 1 2 3 28 28 H 1.09006 * 109.46883 * 30.02797 * 1 2 3 29 29 H 1.08995 * 109.47159 * 150.02974 * 1 2 3 30 30 H 1.07999 * 119.99872 * 359.97438 * 3 2 1 31 31 H 1.07990 * 120.00461 * 180.02562 * 4 3 2 32 32 H 1.07998 * 119.99869 * 180.27383 * 5 4 3 33 33 H 1.08996 * 110.71695 * 336.74818 * 9 7 6 34 34 H 1.08996 * 110.72053 * 99.84540 * 9 7 6 35 35 H 1.08999 * 111.00406 * 277.42751 * 10 9 7 36 36 H 1.09005 * 111.00498 * 153.57267 * 10 9 7 37 37 H 1.08998 * 110.36709 * 204.15043 * 11 10 9 38 38 H 1.09005 * 110.36466 * 81.82577 * 11 10 9 39 39 H 1.09000 * 109.47319 * 300.00241 * 16 13 12 40 40 H 1.09002 * 109.46726 * 60.00315 * 16 13 12 41 41 H 1.09000 * 109.47224 * 300.00441 * 17 16 13 42 42 H 1.08998 * 109.46999 * 59.99778 * 17 16 13 43 43 H 0.96997 * 120.00180 * 179.97438 * 21 20 18 44 44 H 1.08007 * 119.99736 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0066 6 6 3.5806 -1.1969 0.0013 7 6 4.3341 -2.5021 0.0025 8 1 3.6800 -3.3079 -0.3306 9 6 4.8613 -2.8024 1.4215 10 6 6.2587 -3.4194 1.1496 11 6 6.7229 -2.6063 -0.0845 12 7 5.5016 -2.4062 -0.8857 13 16 5.4531 -2.1203 -2.5161 14 8 4.2378 -1.4103 -2.7113 15 8 6.7077 -1.5180 -2.8038 16 6 5.3532 -3.7706 -3.2623 17 6 5.3012 -3.6392 -4.7858 18 6 5.2176 -5.0102 -5.4057 19 1 5.2026 -5.8875 -4.7761 20 6 5.1593 -5.1445 -6.7766 21 7 5.1771 -4.0761 -7.5434 22 14 5.0563 -6.8440 -7.5451 23 1 5.0523 -7.8723 -6.4737 24 1 3.8066 -6.9530 -8.3399 25 1 6.2277 -7.0577 -8.4326 26 6 2.1981 -1.1969 0.0005 27 1 -0.3633 0.0006 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5133 30 1 1.6583 2.1327 -0.0004 31 1 4.1205 2.1326 0.0010 32 1 5.3517 0.0000 0.0115 33 1 4.9514 -1.8842 2.0018 34 1 4.2138 -3.5165 1.9304 35 1 6.1779 -4.4798 0.9109 36 1 6.9272 -3.2608 1.9959 37 1 7.4621 -3.1697 -0.6539 38 1 7.1340 -1.6459 0.2268 39 1 6.2299 -4.3520 -2.9771 40 1 4.4529 -4.2744 -2.9106 41 1 4.4243 -3.0579 -5.0707 42 1 6.2012 -3.1351 -5.1379 43 1 5.1364 -4.1706 -8.5079 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111331725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:17 Heat of formation + Delta-G solvation = -57.096674 kcal Electronic energy + Delta-G solvation = -25836.702725 eV Core-core repulsion = 22266.459353 eV Total energy + Delta-G solvation = -3570.243371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.88896 -37.94541 -36.52779 -35.35409 -33.88340 -32.79195 -31.62723 -31.14647 -30.92972 -28.02404 -26.79282 -25.58852 -23.17235 -22.01695 -21.75295 -21.38117 -20.39528 -18.32183 -17.47747 -16.84747 -16.46133 -16.04971 -15.42385 -15.17446 -14.93331 -14.63592 -14.54919 -13.88471 -13.71572 -13.58996 -13.35155 -13.22604 -12.98180 -12.67520 -12.50618 -12.31304 -12.13311 -11.73984 -11.66708 -11.51915 -11.47652 -11.32134 -11.23173 -11.09522 -11.07049 -10.94398 -10.84732 -10.74517 -10.38530 -10.37679 -9.76410 -9.33128 -8.85662 -8.61942 -8.50615 -8.38505 -6.12260 -4.17897 0.76380 1.47704 1.54439 3.08677 3.25103 3.32207 3.35745 3.84771 4.28856 4.32227 4.39596 4.52870 4.63458 4.85387 4.92091 4.92791 4.98407 5.18427 5.22798 5.23794 5.38714 5.40001 5.48320 5.54987 5.60306 5.63253 5.67538 5.68997 5.75140 5.75901 5.78302 5.84437 6.05664 6.10120 6.16269 6.26956 6.49061 6.49916 6.59349 6.68183 6.78401 7.15200 7.30417 7.36478 7.80837 8.17898 8.85719 9.46862 10.98860 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.003822 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.537343 B = 7324.190350 C = 8123.320744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.122 4.122 4 C -0.116 4.116 5 C -0.106 4.106 6 C -0.079 4.079 7 C 0.191 3.809 8 H 0.083 0.917 9 C -0.118 4.118 10 C -0.131 4.131 11 C 0.121 3.879 12 N -1.012 6.012 13 S 2.599 3.401 14 O -0.946 6.946 15 O -0.963 6.963 16 C -0.591 4.591 17 C 0.028 3.972 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.103 4.103 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.264 0.736 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 4.893 21.554 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.124 4.124 6 C -0.081 4.081 7 C 0.085 3.915 8 H 0.100 0.900 9 C -0.156 4.156 10 C -0.170 4.170 11 C -0.005 4.005 12 N -0.847 5.847 13 S 2.699 3.301 14 O -0.937 6.937 15 O -0.954 6.954 16 C -0.724 4.724 17 C -0.011 4.011 18 C -0.559 4.559 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.122 4.122 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.450 5.854 20.894 21.971 hybrid contribution -0.013 -1.514 -0.630 1.640 sum -3.463 4.340 20.264 21.011 Atomic orbital electron populations 1.20766 0.91412 1.02866 1.01844 1.19812 0.95829 0.93165 0.99906 1.20947 0.94215 0.97293 1.01596 1.21046 0.94347 0.97768 1.00199 1.20857 0.99629 0.92047 0.99902 1.20016 0.93733 0.94874 0.99433 1.20154 0.86565 0.94027 0.90753 0.89953 1.22677 0.96662 1.01563 0.94743 1.22816 0.96418 1.00083 0.97688 1.21944 0.86713 0.99680 0.92130 1.59081 1.11957 1.89163 1.24542 1.05538 0.74338 0.78631 0.71630 1.93585 1.46515 1.70063 1.83531 1.93536 1.44229 1.74947 1.82688 1.30508 1.09875 1.20204 1.11822 1.18957 0.98783 0.99935 0.83389 1.21037 1.51805 0.91507 0.91525 0.92011 1.25073 0.94920 0.97204 0.97290 1.69967 1.49611 1.28476 1.04790 0.86419 0.77812 0.83805 0.79289 1.19633 1.20769 1.20758 1.20759 0.93181 0.97584 1.00636 0.91524 0.91700 0.91488 0.86511 0.86388 0.86626 0.90392 0.90044 0.90369 0.90057 0.90510 0.91535 0.86460 0.86388 0.94859 0.94972 0.92576 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.09 -1.10 5.88 -104.62 -0.62 -1.72 16 3 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 4 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 5 C -0.11 -1.52 8.82 -39.58 -0.35 -1.87 16 6 C -0.08 -1.10 3.29 -104.62 -0.34 -1.44 16 7 C 0.19 2.34 3.25 -68.10 -0.22 2.12 16 8 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 9 C -0.12 -1.02 6.45 -24.90 -0.16 -1.19 16 10 C -0.13 -1.07 7.08 -24.58 -0.17 -1.24 16 11 C 0.12 1.35 6.89 -2.53 -0.02 1.34 16 12 N -1.01 -14.31 2.61 -105.63 -0.28 -14.58 16 13 S 2.60 49.38 5.64 -107.50 -0.61 48.78 16 14 O -0.95 -20.32 15.84 -57.54 -0.91 -21.23 16 15 O -0.96 -20.88 17.60 -57.54 -1.01 -21.89 16 16 C -0.59 -11.80 6.12 37.16 0.23 -11.57 16 17 C 0.03 0.75 4.98 -27.89 -0.14 0.61 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 22 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.10 -1.37 9.33 -39.59 -0.37 -1.74 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.12 1.60 7.74 -52.49 -0.41 1.19 16 33 H 0.08 0.67 7.76 -51.93 -0.40 0.26 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 40 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 41 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.12 1.34 8.04 -52.48 -0.42 0.92 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -35.53 373.56 -11.56 -47.08 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.10 Total: 0.58 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: -2.99 Total: -34.64 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.46 Total: -40.64 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -1.92 Total: -43.12 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 49.38 SS G_CDS: -0.61 Total: 48.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.53 -11.56 -47.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111331725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.013 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds