Wall clock time and date at job start Tue Mar 31 2020 14:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38263 * 120.00008 * 2 1 4 4 C 1.38213 * 120.00008 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99735 * 359.73631 * 4 3 2 6 6 C 1.38214 * 119.99799 * 0.51529 * 5 4 3 7 7 C 1.50706 * 119.99612 * 179.76423 * 6 5 4 8 8 H 1.09004 * 109.87104 * 198.70448 * 7 6 5 9 9 C 1.54327 * 109.88258 * 77.53399 * 7 6 5 10 10 C 1.55155 * 102.93990 * 218.38654 * 9 7 6 11 11 C 1.54910 * 101.58186 * 35.50139 * 10 9 7 12 12 N 1.47015 * 109.88389 * 319.72118 * 7 6 5 13 13 S 1.65601 * 125.64981 * 298.38108 * 12 7 6 14 14 O 1.42095 * 104.27619 * 26.07223 * 13 12 7 15 15 O 1.42106 * 104.27572 * 153.92638 * 13 12 7 16 16 C 1.81395 * 104.44992 * 269.99690 * 13 12 7 17 17 C 1.52997 * 109.47346 * 179.97438 * 16 13 12 18 18 C 1.50696 * 109.47372 * 180.02562 * 17 16 13 19 19 H 1.07990 * 120.00123 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99854 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00408 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99915 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46970 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47127 * 120.00313 * 22 20 18 25 25 H 1.48504 * 109.47078 * 240.00302 * 22 20 18 26 26 C 1.38210 * 120.00154 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47175 * 270.03148 * 1 2 3 28 28 H 1.09006 * 109.46883 * 30.02797 * 1 2 3 29 29 H 1.08995 * 109.47159 * 150.02974 * 1 2 3 30 30 H 1.07999 * 119.99872 * 359.97438 * 3 2 1 31 31 H 1.07990 * 120.00461 * 180.02562 * 4 3 2 32 32 H 1.07998 * 119.99869 * 180.27383 * 5 4 3 33 33 H 1.08996 * 110.71695 * 336.74818 * 9 7 6 34 34 H 1.08996 * 110.72053 * 99.84540 * 9 7 6 35 35 H 1.08999 * 111.00406 * 277.42751 * 10 9 7 36 36 H 1.09005 * 111.00498 * 153.57267 * 10 9 7 37 37 H 1.08998 * 110.36709 * 204.15043 * 11 10 9 38 38 H 1.09005 * 110.36466 * 81.82577 * 11 10 9 39 39 H 1.09000 * 109.47319 * 300.00241 * 16 13 12 40 40 H 1.09002 * 109.46726 * 60.00315 * 16 13 12 41 41 H 1.09000 * 109.47224 * 300.00441 * 17 16 13 42 42 H 1.08998 * 109.46999 * 59.99778 * 17 16 13 43 43 H 0.96997 * 120.00180 * 179.97438 * 21 20 18 44 44 H 1.08007 * 119.99736 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0066 6 6 3.5806 -1.1969 0.0013 7 6 4.3341 -2.5021 0.0025 8 1 3.6800 -3.3079 -0.3306 9 6 4.8613 -2.8024 1.4215 10 6 6.2587 -3.4194 1.1496 11 6 6.7229 -2.6063 -0.0845 12 7 5.5016 -2.4062 -0.8857 13 16 5.4531 -2.1203 -2.5161 14 8 4.2378 -1.4103 -2.7113 15 8 6.7077 -1.5180 -2.8038 16 6 5.3532 -3.7706 -3.2623 17 6 5.3012 -3.6392 -4.7858 18 6 5.2176 -5.0102 -5.4057 19 1 5.2026 -5.8875 -4.7761 20 6 5.1593 -5.1445 -6.7766 21 7 5.1771 -4.0761 -7.5434 22 14 5.0563 -6.8440 -7.5451 23 1 5.0523 -7.8723 -6.4737 24 1 3.8066 -6.9530 -8.3399 25 1 6.2277 -7.0577 -8.4326 26 6 2.1981 -1.1969 0.0005 27 1 -0.3633 0.0006 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5133 30 1 1.6583 2.1327 -0.0004 31 1 4.1205 2.1326 0.0010 32 1 5.3517 0.0000 0.0115 33 1 4.9514 -1.8842 2.0018 34 1 4.2138 -3.5165 1.9304 35 1 6.1779 -4.4798 0.9109 36 1 6.9272 -3.2608 1.9959 37 1 7.4621 -3.1697 -0.6539 38 1 7.1340 -1.6459 0.2268 39 1 6.2299 -4.3520 -2.9771 40 1 4.4529 -4.2744 -2.9106 41 1 4.4243 -3.0579 -5.0707 42 1 6.2012 -3.1351 -5.1379 43 1 5.1364 -4.1706 -8.5079 44 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111331725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:16 Heat of formation + Delta-G solvation = -79.286451 kcal Electronic energy + Delta-G solvation = -25837.664946 eV Core-core repulsion = 22266.459353 eV Total energy + Delta-G solvation = -3571.205592 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83369 -38.86656 -38.15874 -36.99385 -35.93436 -33.69584 -33.15892 -32.57700 -31.86042 -28.90028 -27.72554 -27.56621 -24.26020 -23.45083 -22.96820 -22.32107 -21.45772 -19.69796 -19.02263 -18.29802 -17.81187 -17.20005 -16.93566 -16.60577 -16.50549 -15.86508 -15.66853 -15.22234 -14.85353 -14.62646 -14.50196 -14.36932 -14.14166 -13.89340 -13.76408 -13.54825 -13.28706 -13.15184 -13.01508 -12.97446 -12.94680 -12.80663 -12.60851 -12.44669 -12.31004 -12.12148 -12.04712 -11.91212 -11.77634 -11.73606 -11.49311 -11.17913 -10.68598 -10.05116 -9.61443 -9.37393 -8.28682 -6.43641 -0.76205 0.48735 0.54380 1.39344 1.40422 1.53879 1.75624 2.36237 2.83800 2.87258 3.04452 3.08467 3.67241 3.67950 3.82726 3.98776 4.00973 4.06949 4.11987 4.19244 4.26263 4.38178 4.55129 4.59307 4.64217 4.69002 4.69574 4.86864 4.88286 4.96052 5.01310 5.03895 5.06859 5.18279 5.20321 5.21888 5.23879 5.34633 5.39635 5.51353 5.60055 5.64977 5.72811 5.78143 6.02346 6.19770 6.70012 7.26984 8.84028 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.003822 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.537343 B = 7324.190350 C = 8123.320744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.135 4.135 4 C -0.131 4.131 5 C -0.131 4.131 6 C -0.091 4.091 7 C 0.181 3.819 8 H 0.092 0.908 9 C -0.108 4.108 10 C -0.118 4.118 11 C 0.105 3.895 12 N -1.005 6.005 13 S 2.622 3.378 14 O -0.976 6.976 15 O -0.997 6.997 16 C -0.589 4.589 17 C 0.022 3.978 18 C -0.539 4.539 19 H 0.076 0.924 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.976 3.024 23 H -0.254 1.254 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.122 4.122 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.004 0.996 42 H 0.003 0.997 43 H 0.268 0.732 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 2.879 23.739 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.153 4.153 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.092 4.092 7 C 0.075 3.925 8 H 0.110 0.890 9 C -0.147 4.147 10 C -0.157 4.157 11 C -0.019 4.019 12 N -0.843 5.843 13 S 2.721 3.279 14 O -0.967 6.967 15 O -0.987 6.987 16 C -0.721 4.721 17 C -0.016 4.016 18 C -0.578 4.578 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.799 3.201 23 H -0.178 1.178 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.140 4.140 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.023 0.977 42 H 0.021 0.979 43 H 0.077 0.923 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.052 3.831 23.083 23.747 hybrid contribution 0.167 -0.802 -1.236 1.483 sum -3.884 3.029 21.847 22.395 Atomic orbital electron populations 1.20812 0.89340 1.03276 1.03239 1.20257 0.97550 0.93030 0.98865 1.21274 0.94145 0.98434 1.01413 1.21356 0.95130 0.98233 1.00162 1.21000 0.99652 0.92910 1.01382 1.20274 0.94307 0.95389 0.99229 1.20536 0.85951 0.93622 0.92402 0.88999 1.22685 0.97259 1.02379 0.92343 1.22823 0.96222 0.99929 0.96705 1.22315 0.85691 1.00714 0.93200 1.58615 1.14175 1.88748 1.22785 1.04483 0.72956 0.77781 0.72717 1.93538 1.47593 1.70704 1.84837 1.93484 1.45550 1.75570 1.84122 1.30407 1.11976 1.22165 1.07539 1.18799 0.96068 0.98896 0.87886 1.21528 1.51446 0.92545 0.92298 0.90555 1.26156 0.94253 1.01811 0.98023 1.70116 1.50764 1.31324 1.05267 0.85232 0.77899 0.78408 0.78520 1.17774 1.20244 1.20228 1.21093 0.93293 0.98684 1.00954 0.89538 0.91049 0.91312 0.84426 0.85048 0.87096 0.90272 0.87501 0.89267 0.87458 0.90308 0.91326 0.84333 0.84267 0.97736 0.97901 0.92326 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 10.01 71.24 0.71 -1.22 16 2 C -0.10 -2.37 5.88 -19.87 -0.12 -2.48 16 3 C -0.13 -3.33 9.70 22.27 0.22 -3.11 16 4 C -0.13 -3.52 10.05 22.27 0.22 -3.29 16 5 C -0.13 -3.78 8.82 22.27 0.20 -3.59 16 6 C -0.09 -2.46 3.29 -19.87 -0.07 -2.52 16 7 C 0.18 4.12 3.25 44.60 0.15 4.26 16 8 H 0.09 1.90 8.01 -2.38 -0.02 1.88 16 9 C -0.11 -1.55 6.45 31.78 0.21 -1.35 16 10 C -0.12 -1.51 7.08 31.99 0.23 -1.29 16 11 C 0.11 2.19 6.89 86.86 0.60 2.78 16 12 N -1.01 -27.55 2.61 -488.11 -1.27 -28.82 16 13 S 2.62 101.53 5.64 -56.49 -0.32 101.21 16 14 O -0.98 -43.23 15.84 -127.65 -2.02 -45.25 16 15 O -1.00 -44.64 17.60 -127.65 -2.25 -46.89 16 16 C -0.59 -23.56 6.12 71.98 0.44 -23.12 16 17 C 0.02 1.22 4.98 29.85 0.15 1.37 16 18 C -0.54 -30.51 9.11 25.60 0.23 -30.27 16 19 H 0.08 3.98 7.74 -2.92 -0.02 3.96 16 20 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 21 N -0.94 -57.83 13.29 21.45 0.28 -57.54 16 22 Si 0.98 43.59 29.54 68.60 2.03 45.62 16 23 H -0.25 -10.53 7.11 99.48 0.71 -9.83 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 26 C -0.12 -3.13 9.33 22.27 0.21 -2.92 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.15 8.09 -2.38 -0.02 1.13 16 29 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 30 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.13 2.96 8.06 -2.92 -0.02 2.94 16 32 H 0.11 3.15 7.74 -2.91 -0.02 3.13 16 33 H 0.08 1.15 7.76 -2.39 -0.02 1.13 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.14 4.87 8.14 -2.39 -0.02 4.85 16 40 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 41 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.14 2.87 8.04 -2.91 -0.02 2.84 16 Total: -1.00 -79.44 373.56 1.25 -78.19 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.96 Total: 20.01 kcal Atomic # 6 Polarization: -70.36 SS G_CDS: 3.83 Total: -66.52 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -0.99 Total: -86.36 kcal Atomic # 8 Polarization: -87.87 SS G_CDS: -4.27 Total: -92.14 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 101.53 SS G_CDS: -0.32 Total: 101.21 kcal Total: -79.44 1.25 -78.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111331725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.097 kcal (2) G-P(sol) polarization free energy of solvation -79.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds