Wall clock time and date at job start Tue Mar 31 2020 14:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38265 * 119.99570 * 2 1 4 4 C 1.38212 * 119.99606 * 180.02562 * 3 2 1 5 5 C 1.38257 * 120.00477 * 359.76760 * 4 3 2 6 6 C 1.38222 * 119.99410 * 0.46325 * 5 4 3 7 7 C 1.50695 * 119.99510 * 179.78924 * 6 5 4 8 8 H 1.09005 * 109.87318 * 160.74461 * 7 6 5 9 9 C 1.54325 * 109.88529 * 281.91463 * 7 6 5 10 10 C 1.55151 * 102.94207 * 141.61212 * 9 7 6 11 11 C 1.55133 * 101.49054 * 324.33589 * 10 9 7 12 12 N 1.47018 * 109.88650 * 39.72625 * 7 6 5 13 13 S 1.65606 * 125.64672 * 61.60302 * 12 7 6 14 14 O 1.42094 * 104.27817 * 333.93010 * 13 12 7 15 15 O 1.42106 * 104.27580 * 206.07242 * 13 12 7 16 16 C 1.81396 * 104.45103 * 90.00226 * 13 12 7 17 17 C 1.52997 * 109.47360 * 179.97438 * 16 13 12 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47094 * 90.00289 * 22 20 18 24 24 H 1.48505 * 109.47195 * 210.00171 * 22 20 18 25 25 H 1.48493 * 109.47449 * 330.00136 * 22 20 18 26 26 C 1.38209 * 120.00685 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46860 * 270.02094 * 1 2 3 28 28 H 1.08994 * 109.47223 * 30.02044 * 1 2 3 29 29 H 1.09002 * 109.46857 * 150.02589 * 1 2 3 30 30 H 1.07993 * 120.00195 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.99969 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.00416 * 180.25568 * 5 4 3 33 33 H 1.08998 * 110.72403 * 259.98087 * 9 7 6 34 34 H 1.09003 * 110.71528 * 23.24888 * 9 7 6 35 35 H 1.09003 * 111.00496 * 82.57693 * 10 9 7 36 36 H 1.09000 * 111.00576 * 206.38702 * 10 9 7 37 37 H 1.09005 * 110.49404 * 278.45907 * 11 10 9 38 38 H 1.08994 * 110.34456 * 156.06021 * 11 10 9 39 39 H 1.09002 * 109.47134 * 59.99751 * 16 13 12 40 40 H 1.08998 * 109.46953 * 300.00489 * 16 13 12 41 41 H 1.09002 * 109.47153 * 59.99820 * 17 16 13 42 42 H 1.09001 * 109.46832 * 300.00011 * 17 16 13 43 43 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 44 44 H 1.08006 * 119.99489 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2718 0.0002 0.0038 6 6 3.5807 -1.1968 -0.0010 7 6 4.3343 -2.5018 -0.0011 8 1 3.6803 -3.3074 0.3330 9 6 4.8611 -2.8037 -1.4199 10 6 6.2586 -3.4202 -1.1478 11 6 6.7234 -2.6003 0.0844 12 7 5.5021 -2.4050 0.8867 13 16 5.4540 -2.1170 2.5168 14 8 4.2388 -1.4067 2.7115 15 8 6.7087 -1.5146 2.8034 16 6 5.3541 -3.7664 3.2651 17 6 5.3038 -3.6332 4.7884 18 6 5.2202 -5.0034 5.4101 19 1 5.2049 -5.8815 4.7815 20 6 5.1643 -5.1361 6.7813 21 7 5.1834 -4.0668 7.5467 22 14 5.0613 -6.8346 7.5519 23 1 6.4318 -7.3463 7.8071 24 1 4.3169 -6.7522 8.8342 25 1 4.3534 -7.7557 6.6270 26 6 2.1982 -1.1968 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6582 2.1327 -0.0004 31 1 4.1204 2.1328 -0.0010 32 1 5.3517 0.0002 0.0075 33 1 4.2153 -3.5207 -1.9267 34 1 4.9509 -1.8859 -2.0012 35 1 6.1779 -4.4804 -0.9080 36 1 6.9266 -3.2631 -1.9947 37 1 7.1297 -1.6384 -0.2284 38 1 7.4658 -3.1597 0.6536 39 1 6.2307 -4.3483 2.9804 40 1 4.4537 -4.2706 2.9142 41 1 4.4274 -3.0511 5.0736 42 1 6.2045 -3.1291 5.1389 43 1 5.1437 -4.1602 8.5114 44 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111331727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:20 Heat of formation + Delta-G solvation = -56.937169 kcal Electronic energy + Delta-G solvation = -25838.087508 eV Core-core repulsion = 22267.851054 eV Total energy + Delta-G solvation = -3570.236455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.88702 -37.93986 -36.52894 -35.35529 -33.88263 -32.78833 -31.62393 -31.14674 -30.92764 -28.01633 -26.79226 -25.58683 -23.17211 -22.01703 -21.75083 -21.38079 -20.39372 -18.32183 -17.47781 -16.84631 -16.45891 -16.04903 -15.42341 -15.17488 -14.93324 -14.63372 -14.55107 -13.88832 -13.70791 -13.59195 -13.34366 -13.22663 -12.98457 -12.67775 -12.50231 -12.29136 -12.14041 -11.74182 -11.68623 -11.51876 -11.47599 -11.31943 -11.22266 -11.08544 -11.06971 -10.94856 -10.84057 -10.74877 -10.39855 -10.37355 -9.76127 -9.34240 -8.86033 -8.61854 -8.50226 -8.38110 -6.12105 -4.17804 0.76306 1.47773 1.54612 3.08686 3.25950 3.32041 3.34895 3.85071 4.28902 4.32252 4.39590 4.52492 4.63523 4.85373 4.92190 4.92958 4.98225 5.18223 5.22828 5.23459 5.37260 5.39831 5.48642 5.58574 5.60224 5.62941 5.67549 5.68994 5.75101 5.75853 5.78211 5.84095 6.05720 6.10136 6.16201 6.27126 6.49035 6.49897 6.59409 6.68078 6.78491 7.15276 7.30278 7.36508 7.80714 8.17938 8.85497 9.46860 10.98988 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014382 B = 0.003822 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.404668 B = 7323.401339 C = 8121.841701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.122 4.122 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.080 4.080 7 C 0.192 3.808 8 H 0.083 0.917 9 C -0.118 4.118 10 C -0.131 4.131 11 C 0.121 3.879 12 N -1.012 6.012 13 S 2.599 3.401 14 O -0.947 6.947 15 O -0.963 6.963 16 C -0.591 4.591 17 C 0.029 3.971 18 C -0.520 4.520 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.103 4.103 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.265 0.735 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 4.880 -21.496 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.140 4.140 4 C -0.134 4.134 5 C -0.124 4.124 6 C -0.081 4.081 7 C 0.085 3.915 8 H 0.101 0.899 9 C -0.156 4.156 10 C -0.170 4.170 11 C -0.005 4.005 12 N -0.848 5.848 13 S 2.699 3.301 14 O -0.937 6.937 15 O -0.954 6.954 16 C -0.724 4.724 17 C -0.010 4.010 18 C -0.560 4.560 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.122 4.122 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.472 5.841 -20.835 21.915 hybrid contribution -0.001 -1.521 0.632 1.647 sum -3.474 4.321 -20.202 20.949 Atomic orbital electron populations 1.20771 0.91413 1.02289 1.02429 1.19812 0.95826 0.93173 0.99903 1.20943 0.94213 0.97287 1.01604 1.21045 0.94349 0.97766 1.00228 1.20855 0.99628 0.92046 0.99855 1.20018 0.93741 0.94876 0.99463 1.20151 0.86553 0.94022 0.90762 0.89949 1.22678 0.96679 1.01538 0.94754 1.22854 0.96410 1.00040 0.97704 1.21988 0.86705 0.99652 0.92119 1.59080 1.11951 1.89199 1.24534 1.05539 0.74336 0.78627 0.71641 1.93584 1.46528 1.70048 1.83546 1.93536 1.44216 1.74942 1.82713 1.30506 1.09877 1.20182 1.11827 1.18953 0.98775 0.99912 0.83385 1.21001 1.51954 0.91489 0.91512 0.92067 1.25069 0.94909 0.97199 0.97285 1.69958 1.49517 1.28488 1.04878 0.86469 0.78238 0.83824 0.78762 1.20442 1.20969 1.19749 1.20753 0.93178 0.97579 1.00645 0.91094 0.91869 0.91718 0.86510 0.86390 0.86635 0.90050 0.90375 0.90348 0.90086 0.91515 0.90508 0.86461 0.86384 0.94862 0.94980 0.92521 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.09 -1.10 5.88 -104.62 -0.62 -1.72 16 3 C -0.12 -1.54 9.70 -39.58 -0.38 -1.93 16 4 C -0.12 -1.55 10.05 -39.58 -0.40 -1.94 16 5 C -0.11 -1.51 8.77 -39.58 -0.35 -1.86 16 6 C -0.08 -1.10 3.30 -104.63 -0.34 -1.45 16 7 C 0.19 2.34 3.25 -68.11 -0.22 2.12 16 8 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 9 C -0.12 -1.03 6.45 -24.90 -0.16 -1.19 16 10 C -0.13 -1.07 7.10 -24.46 -0.17 -1.24 16 11 C 0.12 1.35 6.90 -2.41 -0.02 1.34 16 12 N -1.01 -14.31 2.59 -105.51 -0.27 -14.58 16 13 S 2.60 49.37 5.61 -107.50 -0.60 48.76 16 14 O -0.95 -20.31 15.81 -57.54 -0.91 -21.22 16 15 O -0.96 -20.87 17.60 -57.54 -1.01 -21.88 16 16 C -0.59 -11.80 6.12 37.16 0.23 -11.57 16 17 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 18 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 22 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 26 C -0.10 -1.37 9.33 -39.59 -0.37 -1.74 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.12 1.60 7.72 -52.49 -0.41 1.20 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.67 7.77 -51.93 -0.40 0.27 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 40 H 0.12 2.13 8.14 -51.93 -0.42 1.71 16 41 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.12 1.34 8.04 -52.48 -0.42 0.92 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -35.48 373.46 -11.55 -47.03 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.10 Total: 0.64 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: -2.99 Total: -34.65 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.46 Total: -40.64 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.92 Total: -43.10 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 49.37 SS G_CDS: -0.60 Total: 48.76 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.48 -11.55 -47.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111331727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.909 kcal (2) G-P(sol) polarization free energy of solvation -35.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds